Heatmap: Cluster_145 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_5760.1 (SUN5)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_117260.1 (iPGAM2)	-	3.1	-	-	-	-	-	-	-	-	-	-	-	1.44	-	-	1.13	-	-	-	-	-	-	-	2.2	2.95	1.48	-	-	-	1.22
Lsat_1_v5_gn_1_119121.1 (PDR1)	0.03	1.71	0.21	1.57	0.24	-1.11	0.11	0.59	-0.13	-0.03	0.95	0.6	0.02	-	-	-0.41	-0.86	-4.05	-1.24	-0.31	-0.06	-1.38	-	-1.23	0.19	0.65	0.04	-0.7	0.49	0.79	-2.72
Lsat_1_v5_gn_1_1580.1 (TTM1)	-	4.5	-	-	-	-	-	1.51	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.45	-	-	-
Lsat_1_v5_gn_1_46240.1 (ASG7)	0.08	-	-	1.1	1.6	2.52	-	-	1.16	-	-	-0.31	0.94	-	-0.14	-0.17	0.6	-	-	0.59	-	1.55	2.04	-	-	-	-	-	-	-	1.17
Lsat_1_v5_gn_1_64861.1 (PAO)	0.89	3.14	-	-	-	-	-	-	0.6	-	-	-	0.68	-	-	1.13	-	-	-	-	-	2.85	0.67	-	-	2.23	-	-	-	-	0.59
Lsat_1_v5_gn_1_69821.1	-	-	-	-	-	3.05	-	-	3.04	-	-	-	-	-	-	-	-	2.05	-	-	-	-	2.61	-	-	-	-	-	-	-	2.09
Lsat_1_v5_gn_1_7061.1 (FH13)	-	-	-	2.53	-	-	-	-	3.77	-	-	-	-	3.53	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_80580.1	-	-	-	-	-	-	-	-	4.48	-	-	-	-	-	-	-	-	3.12	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_96960.1 (B ALPHA)	0.9	0.66	-1.07	1.34	0.25	0.75	-0.2	-0.82	0.63	0.6	0.14	0.53	-1.04	0.76	0.24	-0.52	-0.46	-2.6	-1.08	0.53	-1.83	-1.87	-1.27	-0.36	-3.08	-0.35	0.24	-0.17	-0.65	-0.86	0.88
Lsat_1_v5_gn_2_120741.1 (EFR)	-	2.75	-1.19	0.85	0.25	0.11	1.6	-0.27	0.95	0.05	-0.43	-	-	-	0.3	-1.3	-0.26	-	0.13	-0.62	-1.63	-	-0.45	1.29	-	0.87	-0.31	-	-0.45	-	0.09
Lsat_1_v5_gn_2_4420.1	0.42	-1.82	-1.82	-0.23	-0.51	0.76	-1.32	-0.29	1.29	0.49	-0.14	0.42	-1.42	0.54	-1.23	-0.63	0.71	-0.61	0.88	0.5	-1.6	-0.82	-2.91	0.18	-0.06	-0.26	-3.23	0.4	-0.4	-0.16	1.61
Lsat_1_v5_gn_2_61580.1	-	-	-	-	-	-	-	4.09	3.8	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_62841.1 (SOK4)	-	4.05	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.85	-	-
Lsat_1_v5_gn_2_74380.1 (FANCM)	1.15	2.78	-	-	-	-	-	-	-	3.2	-	-	-	-	-	-	1.35	-	-	-	-	-	-	-	1.87	-	-	0.58	-	-	2.34
Lsat_1_v5_gn_3_109140.1 (RBCL)	-	-	-	-	-	-	-	-	4.09	-	-	-	-	-	-	-	-	-	-	-	-	-	3.81	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_113220.1 (PETA)	-23.79	3.26	3.35	-	-	-	-	-18.33	-	-	-	-	-	-	-	-	-18.78	-	-	-26.18	-	-0.15	2.72	-24.13	-5.56	-6.15	-	-2.7	-	0.98	0.72
Lsat_1_v5_gn_3_126060.1 (XRN2)	-	4.65	-	-	-	-	-	-	-	-	-	2.55	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_39001.1 (MSD1)	-	4.11	-	-	-	-	-	-	3.77	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_46641.1	-	2.82	-	1.82	-	1.5	-	-	1.44	1.54	-	-	-	-	-	-	-	-	-	-	-	2.57	-	-	1.6	-	-	1.58	-	-	-
Lsat_1_v5_gn_3_88780.1 (IWS1)	-	-	-	-	-	-	3.97	-	3.94	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_108580.1 (NADP-ME1)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_121901.1 (CYP82C4)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_124781.1 (scpl26)	-	-	-	2.9	-	-	-	-	3.0	-	-	-	1.54	1.89	-	-	-	-	-	-	-	-	3.15	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_155080.1 (GH3.15)	0.64	3.19	-	-	-	-	-0.82	-	-	-0.34	-	-	-0.34	-	-	-	0.7	1.95	-	-	-0.54	-	3.14	-	-	0.31	-	-	-	-	0.98
Lsat_1_v5_gn_4_162440.1 (DHAD)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_177540.1 (MORC5)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_179960.1 (KPI-2)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_28460.1	-	-	-	-	-	-	-	-	4.38	-	-	-	3.35	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_31700.1	-	4.19	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.67	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_38640.1 (IDH-V)	-	4.3	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.26	-	-	-	-	-	2.7	-	-	-	-
Lsat_1_v5_gn_4_53181.1 (HEMN1)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_54481.1 (NAR1)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_83740.1 (ATPH)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_93300.1 (UBP4)	-	-	-	0.8	2.08	1.49	-	-	2.77	-	-	0.48	-	-	0.67	-	-	-	-	-	-	-	2.37	-	-	-	1.71	-	-0.59	-	1.72
Lsat_1_v5_gn_5_122840.1 (PPK1)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_135180.1	-	-	-0.85	-	-0.62	1.06	-0.82	-1.01	0.66	0.66	0.17	0.08	0.98	-0.35	0.33	-0.9	-0.61	-0.69	1.81	0.45	0.22	-0.63	-	-1.27	-1.24	0.14	-2.38	0.36	-2.18	1.23	1.5
Lsat_1_v5_gn_5_136980.1 (SRS2)	-	-	-	-	-7.61	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_145980.1 (ACS7)	0.44	2.44	-	-	-0.91	-	-	-	-	-0.72	-	-	2.72	0.24	0.83	-	-0.76	2.85	0.59	-	-	-	-	0.99	-	-	-	-1.17	-	-0.99	0.31
Lsat_1_v5_gn_5_164901.1 (IYO)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_20201.1 (RAF1)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_27700.1 (YCF2.2)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_34661.1 (BS14B)	-	-	-	2.37	-	-	-	-	3.28	-	-	2.33	-	1.69	1.45	-	-	-	-	-	-	-	-	-	-	-	1.51	-	-	1.2	-
Lsat_1_v5_gn_5_60801.1	-	3.48	-	-	-	-	-	-	0.09	0.19	-0.03	1.92	-	-	-	-	-	-0.12	-	0.74	-	-	-0.02	-	-	-	-	1.71	-	-	2.58
Lsat_1_v5_gn_5_76180.1 (URT1)	-	4.16	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.71	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_1020.1 (OTP82)	0.33	3.25	-	2.22	-	-	-	-	-	-	-	2.73	-	-	-	-	-	-	2.58	-	1.14	-13.45	-0.46	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_22300.1 (TCX7)	-	-	-	-	0.41	0.36	0.79	-	2.27	0.29	-	-	0.4	-	-	-	1.56	-	-	1.18	-	0.65	-	1.87	1.4	0.08	-	1.73	-	-	0.85
Lsat_1_v5_gn_6_77181.1	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_79440.1 (PES1)	0.61	1.88	-	-	0.13	-	-	-	0.04	-	-	-0.77	-	-	-0.59	-0.34	1.53	1.37	-	-	-	1.18	2.07	-0.9	-0.86	0.66	-	0.01	1.48	-0.53	1.35
Lsat_1_v5_gn_7_17241.1	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_53801.1 (APX3)	-	-	-	-	-	-	-	-	4.27	-	3.55	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_77900.1 (GATA27)	-	-	-	-	-	-	-	3.61	3.34	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.11	-	-	-	-	-
Lsat_1_v5_gn_8_126340.1 (SAUR14)	1.16	3.12	1.62	-2.75	0.95	-3.14	-	-2.76	0.48	-	-	-	0.1	-	-2.49	-	-1.69	0.9	-1.91	-2.94	-1.95	-	2.58	-	-2.81	-0.26	0.03	-2.76	-	-0.65	-1.34
Lsat_1_v5_gn_8_126681.1 (MIEL1)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_143280.1 (MBD9)	-3.11	0.5	-2.19	-0.07	0.96	0.44	-0.67	-0.96	-1.71	-0.02	0.22	-1.65	0.29	0.49	0.4	-2.57	0.56	1.09	-1.31	-0.18	-1.28	0.85	-0.25	-0.99	-1.66	0.26	-0.02	0.98	1.11	-1.46	0.62
Lsat_1_v5_gn_9_3321.1 (BTI2)	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_39601.1	-	4.5	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.07
Lsat_1_v5_gn_9_54101.1 (CBF1)	0.98	2.76	-0.72	-	0.88	0.45	-1.36	-0.44	-	-3.08	-2.88	-1.98	-0.19	-0.09	0.92	-1.33	-1.95	1.06	-1.13	-0.65	-0.7	-	2.75	-	-1.55	-0.04	-	-2.03	-	-2.83	-2.11
Lsat_1_v5_gn_9_58440.1	1.82	3.52	-	-0.61	1.13	0.9	0.33	-0.71	-0.68	-	-	-	-1.0	-	0.47	-	-	-	-	-	-	-	-	-0.97	0.29	0.97	-	-	1.21	-	-0.2
Lsat_1_v5_gn_9_82821.1	-	0.42	-	0.34	-0.17	1.62	-	-	2.37	1.52	0.4	0.27	-	0.75	-	-	1.62	-	1.34	1.25	-	-	-	-	-	-	-	1.28	-	-	0.82
Lsat_1_v5_gn_9_8420.1 (CRB)	-	2.9	-	-	-	-	-	-	-	-	-	0.82	3.04	-	-	-	-	2.9	-	-	-	-	-	-	-	1.0	-	2.02	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.