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Heatmap: Cluster_512 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra002866 (emb2731)
 0.19 0.81 0.78 0.19 0.36 -0.13 -0.4 -0.36 -0.35 -0.43 -0.07 -0.17 -0.21 0.39 0.27 -0.06 -0.23 0.4 0.06 -0.14 -0.3 0.13 0.27 -0.46 -0.2 -0.12 -0.36 -0.38 -0.26 -0.28 -0.24
0.5 0.67 0.83 0.47 0.28 0.02 -0.23 -0.24 -0.43 0.1 -0.06 -0.14 -0.28 0.28 0.18 -0.22 -0.38 0.51 0.11 0.02 -0.26 0.1 0.73 -0.76 -0.76 -0.76 -0.8 -0.53 -0.53 -0.23 -0.4
Bra035597 (emb2731)
 0.56 0.66 0.79 0.65 0.81 0.11 -0.56 -1.6 -0.43 -0.16 -0.13 -0.62 -0.38 0.66 0.2 -0.16 -0.45 0.56 0.09 0.03 -0.83 0.09 0.18 -0.45 -0.49 -0.39 -0.33 -0.3 -0.25 -0.25 -0.56

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.