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Heatmap: Cluster_44 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.17 - - - 3.71 - - - - - - - - - - - - - - - - - - - - - - - -
Bra001480 (NAC1L)
 3.36 2.59 1.93 0.6 -2.82 -1.81 -5.07 - -1.45 -3.78 -2.34 -2.51 -1.28 -3.7 -1.01 -2.98 -4.69 0.47 -2.66 -3.74 - -2.8 1.66 -2.35 -2.17 -0.47 -3.12 -2.19 -2.04 -3.11 -2.24
-0.34 - 3.05 1.46 1.92 2.31 -3.29 - -1.01 -0.27 - -1.22 - 0.76 - -0.32 -2.09 -0.23 -3.01 -0.3 - 1.98 - - - - - - - - -3.05
-0.91 1.34 1.63 1.57 0.04 1.71 -0.5 0.03 -1.03 -1.3 -0.08 -0.23 -1.0 -2.0 0.52 -0.7 -0.46 - -3.3 -0.16 -1.59 -0.0 -0.22 -0.66 -0.2 -1.39 -0.56 1.13 0.27 -2.06 -2.04
Bra002689 (APD7)
 - - 2.96 3.0 - 0.35 - 1.51 - - - - - 2.33 0.88 - - - - - 0.45 - 0.38 - - - - - - - 0.62
1.18 0.69 2.07 1.43 1.31 1.83 -1.43 0.48 -2.63 -0.08 -0.81 0.77 -1.27 0.49 -0.4 -1.04 -2.35 -0.45 -0.75 -0.15 -0.37 0.73 - -2.32 -2.18 -1.14 - - -1.95 - -
Bra003396 (ASHH4)
 3.32 0.85 1.75 1.0 -2.36 -1.53 -1.38 -3.33 -0.26 -0.01 -1.27 -1.62 -10.04 -5.42 -4.85 -1.75 -2.79 - -2.3 -3.16 -3.6 0.64 -8.61 0.28 0.48 -0.28 -0.23 -0.04 0.6 -0.11 -3.94
Bra003592 (J8)
 1.92 1.58 1.8 0.61 -0.21 0.65 -1.44 -3.2 0.23 -1.02 0.38 -0.36 -0.35 1.06 1.23 -1.08 -1.76 -2.58 -1.2 -0.45 -1.11 0.4 -0.38 -1.76 -1.76 -1.81 -2.12 -2.02 -1.3 -0.64 -1.69
-0.19 - 1.79 0.89 1.0 0.45 - - - - - - 0.64 2.46 1.32 -0.29 - -0.31 1.18 1.52 -0.51 - 0.52 - - - - - 1.6 - -
2.59 2.88 1.78 -0.74 -3.02 -0.02 -3.02 -1.76 -2.07 -0.75 -1.92 -2.68 -2.11 -1.59 -2.2 -1.08 0.03 -1.52 -2.92 -2.1 -0.79 -3.1 -0.08 -0.46 -0.04 0.69 -0.46 -0.23 -0.53 -1.97 -1.52
Bra005428 (NLM4)
 1.17 1.76 3.33 2.18 3.06 -2.07 -3.4 -4.21 -4.52 - - 0.74 - - -6.61 - - -2.2 -9.85 - - - - -5.8 -8.03 -6.33 -5.02 -6.49 -6.1 -6.73 -9.35
Bra005621 (EIF3C)
 3.56 - 2.19 2.23 - - 0.39 0.54 0.74 - - - - - - - - 0.95 - - - 1.84 - - - - - - - - -
Bra005927 (YAP169)
 1.72 2.73 1.12 2.04 -2.74 -6.94 -3.75 0.19 -2.15 -3.2 0.22 -2.74 -0.73 - - -3.55 -6.26 -7.71 -2.43 -4.4 -1.66 -1.4 -2.34 -0.34 0.12 -0.89 0.55 0.72 -0.53 1.76 -1.74
Bra006592 (HYC1)
 0.33 1.41 1.46 1.57 0.85 0.67 0.03 -1.37 -1.86 0.31 -1.05 0.03 -0.05 -0.58 -0.7 -0.65 -1.85 -1.43 -0.61 -1.06 0.17 -0.02 1.19 -0.51 -0.42 -1.82 -3.24 -1.5 0.22 -0.05 -2.51
0.65 0.31 1.64 0.87 1.11 1.03 -1.04 -1.45 -0.17 -0.99 -0.98 -0.59 -0.05 -0.68 0.01 -1.14 -0.61 0.25 -0.63 -1.07 0.11 -2.39 0.5 -0.15 -0.62 0.1 -0.08 -0.66 -0.17 -0.44 0.15
Bra007288 (PIP5K4)
 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra007496 (ASHH4)
 3.07 0.03 1.75 1.07 -2.41 -2.0 -0.84 -1.02 -0.53 -0.55 -1.27 -2.62 - - - - - - -2.22 -1.48 - 0.54 -0.33 0.4 1.14 -1.02 1.11 -0.28 1.06 -0.64 -3.38
3.64 - 3.61 - - - - 1.58 - - 1.77 - - - - - - - - - - - - - - - - - - - -
Bra007947 (MLP28)
 1.81 1.72 1.48 2.19 0.74 -0.18 -0.24 -0.35 -0.58 -0.1 -0.68 -0.85 -1.94 -0.79 -0.6 -0.47 -1.01 -1.78 -0.74 -0.43 -1.31 -1.12 -1.93 -0.71 -0.73 -2.17 -0.78 -0.88 -0.72 -0.57 -0.83
Bra008102 (LTPG8)
 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra009285 (YAP169)
 3.14 2.37 2.32 1.17 -3.1 -4.4 -4.87 -1.63 -1.99 -2.13 -1.05 -0.48 -3.21 -6.65 -3.02 -5.15 -4.2 0.94 -3.77 -0.79 -4.15 -2.59 -1.62 -2.23 -3.0 -0.48 -1.35 -1.97 -0.24 0.51 -2.7
Bra010354 (YUC8)
 3.8 1.24 2.1 1.21 - - - - 0.17 - 1.24 - - - - - - - - 0.8 - - - - - - -1.27 - -0.99 0.53 -0.96
Bra010403 (RMA3)
 2.21 1.07 1.88 1.15 0.77 0.15 -0.51 -1.41 -0.44 -0.4 0.99 -0.22 -2.02 -2.9 -5.35 -1.34 -2.28 -5.65 -2.93 -0.1 -1.04 0.98 0.22 -1.32 -0.2 -0.43 -0.36 -2.37 -1.35 -0.73 -1.21
Bra010404 (HUP54)
 2.74 2.04 2.23 2.32 -1.33 -0.94 -2.24 -0.77 -0.9 -1.2 0.08 -1.07 -2.5 -2.89 -2.79 -2.59 -2.56 -4.9 -2.24 -0.16 -1.63 -0.19 0.86 -4.03 -3.43 -1.59 -3.3 -5.49 -1.83 -1.54 -3.37
Bra010839 (WRKY65)
 2.08 1.98 1.64 1.64 -0.2 0.43 -1.63 -1.49 -2.22 0.06 -1.44 -1.29 -1.11 -4.17 -0.37 -1.7 -1.77 0.63 -1.53 -0.71 -0.56 0.23 1.27 -1.77 -0.92 0.3 -3.52 -1.87 -1.98 -2.09 -3.32
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.93 2.24 2.25 -0.51 1.18 -0.29 -0.5 0.0 - -1.24 -0.25 -1.39 - - 1.89 - -1.07 -1.34 - -2.23 - 0.32 - - - - - - - - -0.5
Bra011775 (HLS1)
 2.01 2.17 2.14 2.2 0.13 -2.54 -2.35 -1.0 -1.72 -1.22 -1.41 -0.66 -2.34 -3.41 -1.93 -1.54 -2.33 -1.66 -1.64 -1.97 -1.9 -1.38 -1.92 -2.74 -2.3 -2.71 -1.04 -0.64 -1.17 2.01 -0.37
Bra012007 (LCB1)
 -0.88 0.45 3.22 2.17 1.79 2.04 0.89 0.9 - -1.47 - - -1.16 - - - - - -1.06 - -2.25 - 0.21 - - - - -1.47 -0.1 - -
0.4 0.49 3.14 -0.29 2.75 2.37 -1.68 -4.2 -2.63 -0.44 -0.02 -1.15 - - - - - -1.22 -0.07 - 0.92 -1.32 - -7.13 -1.4 - - - - - -
Bra012431 (NPF4.5)
 2.82 2.18 3.07 1.34 -0.6 - - -2.46 -1.22 - - - - - - -2.07 - - -2.54 -1.27 - - 0.03 - - -0.35 -0.33 -0.99 0.21 0.74 -1.13
Bra012828 (HSFA7A)
 2.97 3.89 1.58 -0.07 - -1.88 - - - -1.03 0.3 -2.16 -2.81 - - - - - -2.13 - - - -0.99 -3.13 -2.04 -2.68 -2.88 - -0.93 -2.99 -
Bra012856 (PP2C.D6)
 2.2 1.78 2.86 2.14 0.88 1.58 -0.75 -0.23 -3.42 -1.04 - - -2.34 -1.24 0.12 - -2.78 -0.06 -2.03 -1.16 -1.52 - -3.6 -3.15 - -2.79 - -4.85 -4.75 - -2.44
3.06 - - - - 1.4 - - - - - 0.41 2.17 - - - - 0.32 - - - - 3.0 2.3 - - - - - - -
Bra013986 (NTRC)
 3.22 - 2.92 -1.2 2.0 1.38 - - -1.29 1.26 - - - -0.02 - - -0.29 - - - -0.34 -0.28 - - - - - -0.23 - - -
2.1 -1.54 3.02 2.78 2.24 1.15 - - -0.29 -0.63 -1.26 -4.26 - - -4.27 - - -5.56 -1.62 -4.4 -0.52 0.15 - -2.89 - - - - - -5.45 -3.78
Bra014612 (NTT)
 1.21 -0.18 0.31 -0.6 -0.35 -0.2 -0.79 - -0.35 -1.94 -0.63 -0.39 0.04 0.43 0.62 0.28 0.29 2.1 0.68 -1.31 -1.9 -1.02 1.07 -0.47 -0.06 -1.95 -0.32 -1.13 0.04 -1.24 0.08
Bra015712 (PTAC13)
 1.05 0.36 1.8 -0.34 1.09 -0.08 -0.42 -2.13 -0.4 0.04 -0.21 -0.43 -0.7 0.42 0.91 -0.23 -0.0 -2.12 0.03 0.17 0.55 0.27 -1.15 -0.67 -0.56 -0.93 -1.27 -1.26 -0.0 -1.14 -0.65
0.18 1.16 1.59 1.63 0.58 1.4 -0.38 0.07 - -2.98 -0.86 -0.51 -0.49 0.18 -0.37 -0.36 -0.9 -0.4 -0.15 -1.13 -1.36 -0.24 -1.85 0.66 -3.05 -0.75 0.51 -0.44 -0.57 -0.53 -0.31
Bra015808 (LCR77)
 2.42 2.74 2.92 1.03 -1.87 - - -0.62 -3.0 -1.88 -2.78 - - - - - - - - -2.67 - - - - -1.69 -0.33 -2.45 0.95 -0.43 1.83 -2.45
- - 3.98 3.2 0.27 - 2.11 - - - - -1.02 - - - - - - - - - - - - - - - - - - -
Bra015872 (PR5)
 - - 4.08 3.32 0.88 - 1.17 - - - - - - - - - - - - - - - - - - - - - - - -
3.68 2.0 1.52 - 1.63 - 2.29 - - - - - - - - - - - - - - - - - - - - - - - 1.73
4.08 - 2.49 - 1.94 - - - - - - - - - - - - - - - - - - - - - - - - - 2.22
Bra018185 (COPT2)
 -0.95 0.79 1.26 2.01 -0.67 -1.14 -1.8 -0.14 -0.99 1.0 -0.21 -0.27 -1.9 -2.5 -3.01 - -1.32 - -0.05 0.12 -0.39 1.31 -0.4 -0.85 -0.59 -0.64 0.6 1.31 0.14 -0.1 -0.11
Bra019291 (JR2)
 4.77 - - - - - - - - - - - - - - - - - - - 1.88 - - - - - - - - - -
Bra020390 (RR18)
 1.28 -0.77 2.15 1.55 2.36 1.18 -1.58 0.49 -1.98 0.27 -1.28 -0.17 -3.13 0.14 -0.7 -0.03 -0.26 -4.66 -1.84 0.32 -1.13 -0.01 -2.71 -2.51 -1.9 -1.22 -1.98 -1.34 -2.84 -2.66 -3.76
Bra021260 (SON1)
 3.35 - 2.3 - - 2.16 - - - - - - - - - - - - - - - - 2.8 - - - 2.16 - - - -
2.89 1.82 3.32 1.85 - - - - -0.75 - - - - - - 0.68 -1.37 - - - - - 1.43 - -1.27 -0.55 - - - - -3.26
1.91 - 2.88 - 2.14 1.54 - - 2.69 - - - - - - - - - 0.52 - 0.64 - 1.63 - - - - - - - -
3.26 2.79 2.44 2.87 0.85 - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra023144 (PUP4)
 -0.65 1.09 2.28 0.72 0.73 0.48 0.06 -0.73 -1.22 0.22 0.21 -0.37 -1.5 -0.45 0.49 -0.03 0.73 -2.37 -0.9 -1.41 -0.62 -0.41 -1.42 -1.03 -0.5 -1.21 -0.91 -0.57 0.45 -0.01 -1.81
Bra023275 (VIM2)
 2.89 1.68 3.48 3.21 - - - - - - - - - - - - - - - - - - - - - - - - - - -
4.57 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.84
Bra023768 (MOS11)
 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.8 - 3.38 0.21 -0.25 0.79 2.01 - - 1.37 - - - - - - - 1.27 - - - - -0.17 - - - - - - - -
1.69 2.18 1.18 2.23 0.81 -0.25 -0.41 -1.46 -0.36 0.0 -0.5 -0.29 -0.26 -0.44 -0.39 -1.08 0.09 -1.49 -0.3 -1.1 -1.59 -0.34 -0.53 -4.62 -1.18 -3.61 -1.73 -2.08 -2.41 -1.35 -1.87
-0.14 - 3.09 -0.07 2.53 1.76 -0.57 - - - - -0.63 - - 1.53 - - 2.01 0.85 -0.47 - - -0.48 - - - - - - - -
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
1.13 - 2.4 -0.58 -0.52 0.41 1.93 1.5 0.68 -0.07 0.14 -0.0 -0.41 - - 0.41 - - - -2.1 1.18 -1.18 - - 0.8 -0.62 0.12 - -0.97 -1.98 -1.97
Bra027246 (ATA20)
 2.36 2.88 2.64 2.13 2.38 - -1.77 - -3.46 -2.26 - - - -1.59 - - - -1.19 - - - - -2.21 - -1.4 - - -2.94 - - -0.82
1.27 1.51 1.55 1.02 0.89 1.51 -0.68 -0.53 -0.07 -1.54 -0.26 -2.92 -3.1 -0.91 -0.16 -0.5 -0.24 -1.49 -0.21 0.33 -0.66 -1.55 -1.03 -0.47 -0.55 -0.69 -0.4 -1.03 -0.31 -0.74 -0.34
1.84 -0.16 1.97 -1.18 -0.74 -2.21 -1.27 -3.33 -2.31 -2.22 -3.13 -1.34 -0.41 1.76 1.36 -0.91 -2.99 2.13 -0.27 -3.11 - -0.52 1.3 -2.28 -0.89 - - 0.5 -0.02 -0.3 -3.01
Bra028706 (YAP169)
 4.51 1.73 0.78 -1.66 -2.81 - - -1.9 - - - -2.0 - - - - - - - -1.84 - - - - - -0.92 - -2.54 -1.75 -0.72 -1.69
Bra028950 (DDR1)
 2.45 1.47 2.1 0.69 -0.18 0.24 -1.92 -2.01 -0.83 -0.42 -1.11 -0.83 -1.89 -0.98 0.71 -1.63 -1.56 0.38 -0.71 -1.22 -1.18 -1.03 0.92 -2.76 -1.88 -1.11 -1.03 -1.88 -0.67 -0.19 -0.77
2.36 - - - - 1.26 - 0.95 - - - - 2.45 0.8 0.99 0.97 -0.18 -0.06 1.28 - - - 2.04 - - - - - - - 0.98
Bra030084 (HISN5B)
 1.47 - 2.99 1.47 0.91 0.96 - -0.07 - - - - - - - - 1.04 1.12 2.03 - - 1.12 - 0.15 - - 0.19 - - - -
Bra030217 (CYP71B2)
 3.73 - 1.13 1.96 0.75 -2.58 -3.62 0.81 -0.46 1.75 -1.57 -0.79 -3.35 - - - -2.51 -0.55 -0.06 -1.51 - -0.56 - - - - - - - - -
Bra030703 (NOT2a)
 2.01 -0.09 3.11 0.14 2.07 -4.97 1.64 - - - 1.3 - 0.59 - - 2.2 - - - - - - -3.33 - - - -4.01 - -3.13 -3.79 -
Bra030996 (NF-YA8)
 0.55 0.27 1.97 - 2.17 1.9 -3.3 -0.98 -1.32 0.47 -0.93 -0.66 -0.64 0.19 - -1.87 - -3.23 - -2.09 -1.6 -1.68 -1.08 0.38 -0.18 0.09 -0.12 -0.06 1.11 -0.23 -0.01
3.2 3.37 2.75 0.6 -0.74 -2.56 -2.1 -2.33 - -2.51 - -2.06 -1.36 - - -2.32 - - -3.62 - -3.63 - -3.57 -2.63 - -3.59 -3.39 -3.41 - -1.48 -
Bra032230 (GIL1)
 - - 2.61 - 3.06 -0.23 - - - - - - 2.05 - - 1.06 - 2.32 2.17 - - - - - - - - - - - -
Bra032461 (SOK1)
 4.27 - - - 2.56 - - - - - - - - - - - - 2.52 - - - - - - - - - - - - -
2.81 1.21 - 2.31 2.1 1.47 -1.35 - - - 1.37 -0.4 - - - - - 1.49 - - - - 0.8 - - - -1.19 - -1.07 - -1.08
Bra033675 (APT1)
 3.07 1.62 3.53 2.56 - 0.08 - - - - - - - - - - - 0.06 - - - - - - - - - - - - -
Bra035039 (HBP1)
 -1.31 1.49 2.88 -1.31 3.2 2.18 -0.31 -1.71 - - - - 1.36 - - - -0.63 - -1.76 -1.61 - - -1.7 - - - -0.53 -1.47 - - -
Bra035315 (MIRO1)
 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra036002 (YUC5)
 2.51 2.94 1.84 -0.5 -1.35 -2.02 -1.63 -0.72 - -0.73 0.59 -1.38 0.5 - -0.74 -2.85 0.1 - - -0.39 -1.13 -0.48 -2.02 -0.55 - -0.2 -0.44 -1.14 -1.78 -0.85 -1.82
Bra036360 (CRF11)
 1.61 1.11 2.67 1.8 0.06 -0.17 -2.55 -1.71 -1.13 -0.87 -1.38 -1.15 -1.01 -0.39 -0.75 -1.1 -1.79 0.15 -2.09 -0.58 -1.27 -0.56 1.37 -1.99 -3.41 -2.16 -1.88 -1.98 -2.19 0.35 -0.28
Bra036535 (ZFP3)
 - - 1.19 1.23 1.78 0.03 - -2.7 -1.14 0.38 -0.66 -0.99 0.99 1.41 -0.13 -0.72 0.63 -0.93 1.48 0.67 0.08 -0.56 -0.19 -1.07 - - -0.57 0.66 -2.38 -2.5 -0.85
- - 3.9 4.0 - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra038185 (CAS1)
 2.78 2.06 3.29 2.23 -2.0 -1.14 - 0.11 - - -2.31 - - - - -1.82 -1.93 - - -2.91 - 0.06 - - -0.1 - -2.85 -1.09 -3.03 -3.07 -
Bra038350 (BRC2)
 2.98 - 1.14 - 2.66 - - - - - - - 0.02 - - - - 1.07 - - -0.27 - 1.48 - 1.46 - - - - 0.01 2.04
Bra038648 (FLS3)
 1.95 1.69 0.85 1.07 -0.91 0.24 -0.99 -0.45 -0.96 0.39 0.11 -0.72 -0.72 -1.18 -0.36 -2.79 -0.73 -0.81 -0.75 0.26 -0.72 -1.88 0.18 -3.11 0.18 0.47 0.01 0.23 -0.25 -0.52 -1.87
Bra040487 (SGT1A)
 3.12 2.24 2.46 2.17 0.02 -2.32 -2.57 -2.36 -1.26 -2.38 -2.24 -0.72 -2.27 -1.86 - -0.46 - - -0.86 -2.04 0.23 -0.65 - - - -1.12 -1.89 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.