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Heatmap: Cluster_88 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000579 (RSM1)
 -0.36 -0.34 - -0.33 0.86 - 0.24 - - - -1.75 - 2.24 -1.15 1.14 - -1.42 3.39 - - - -1.4 2.66 - - - - - - - -1.42
-2.15 -2.14 -1.03 -0.57 -0.17 -2.26 -0.44 -0.37 -0.19 -0.67 -0.51 -1.55 1.54 -0.03 0.07 0.1 -0.4 2.35 -0.68 -0.03 -1.36 -1.59 1.81 -0.18 -0.88 0.15 -0.35 -1.48 -0.72 -0.02 0.31
Bra002339 (DTX50)
 - - - - - - - - - - - - 3.77 - - - - 4.12 - - - - - - - - - - - - -
Bra002360 (AGO9)
 - - - - - - - 3.1 - - - - 3.36 - - - - 3.15 - - - - - - - - - - - 1.74 -
Bra002648 (CHX25)
 - - - - 0.96 - - - - - - - 3.69 - 0.39 - - 3.89 - - - - - - - - - - - - -
Bra003528 (DTA4)
 0.17 -0.79 -0.09 -1.74 0.87 -0.28 -0.39 -0.34 -0.15 -0.12 0.17 -1.04 1.13 0.53 0.71 0.62 -0.08 0.45 -0.04 0.23 -0.64 0.04 0.25 -0.47 -0.54 -0.25 -0.44 -1.19 -0.15 -0.09 0.04
- - - - - 2.13 2.05 - - - - - 3.26 - - - - - - - - - - 2.98 - - - - 2.33 - -
Bra004255 (TEL2)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 4.58 - - - - - - - - - 2.84 - - - - - - - -
Bra007734 (ENODL5)
 - - - - - - -0.62 0.11 - -1.03 -2.24 - 2.32 -0.68 - - 0.07 2.61 0.86 - - - 1.83 1.63 -1.97 1.19 -0.43 -1.79 -1.89 0.24 1.21
0.73 -0.6 -1.11 -1.27 2.13 0.09 -2.45 -3.71 -0.33 -2.09 -1.76 -2.68 2.49 -2.27 -1.05 -1.17 -0.33 2.54 -2.54 - -1.48 -1.63 2.41 -2.69 -4.39 - -2.53 -2.15 -3.54 -2.03 -2.94
- - - - - 2.67 - - - - - - 3.28 - 0.53 0.59 - 2.58 - - - - - - 0.64 - - 0.56 - - 1.56
- - - - - - - - - - - 2.84 4.58 - - - - - - - - - - - - - - - - - -
-0.26 - -1.21 -0.99 1.08 -2.27 -1.74 2.45 -0.37 -0.62 -0.07 -1.53 -1.03 1.25 2.89 -0.69 -1.33 0.58 0.0 -1.03 -0.16 -0.67 -1.17 -0.48 -4.26 -3.29 -3.64 -0.46 -2.52 -2.26 -3.52
-4.57 -3.78 -3.43 -4.93 -3.48 -3.53 -3.04 2.38 -1.96 -2.12 -2.62 -2.03 2.45 -1.28 3.43 -2.28 -2.19 -1.35 -0.91 -2.02 -1.81 1.79 -2.02 -0.88 -1.76 -1.65 -2.06 -3.42 -3.05 -2.43 -1.87
Bra011612 (AGF1)
 - -0.52 -2.67 -0.18 -0.85 -1.54 -1.11 -0.93 -0.61 -0.18 -0.87 -0.82 2.42 0.74 0.45 -1.27 0.14 1.7 0.65 -0.44 -0.47 -1.51 2.42 -0.99 -2.54 - -1.44 -1.28 -2.27 -0.78 -0.74
- - - - - - - -0.22 - - 2.08 - 3.94 - -0.72 0.69 - 2.9 -0.15 - - - - - - - - - - - -
Bra011742 (CP31)
 - - - - - - 3.12 - - - - - 3.62 - - - - 3.32 - - - - - - - - - - - - -
- - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra012776 (PEP7)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra012843 (PATL6)
 0.71 -1.41 0.24 0.12 0.8 -1.81 -0.88 1.27 -0.71 -0.79 -1.2 -1.12 2.66 -2.95 0.02 -1.74 -0.57 2.3 -0.64 -1.26 -1.09 -1.87 1.12 -3.79 -1.42 - -2.01 -2.57 -2.57 -0.36 -1.01
Bra013064 (PPRD1)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra014630 (BRP4)
 - - - - 1.43 - - - - - - - 1.71 - 2.68 - - 4.1 - - - - 0.51 - - - - - - - -
- - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra016852 (DEG23)
 -1.38 - -2.41 - 1.83 -2.67 - -2.69 -1.07 -2.66 -1.28 0.57 2.75 -2.33 -1.37 0.76 0.93 2.68 -0.74 -1.0 - 0.7 0.69 - -0.49 - - 0.59 - - -2.43
- - - - - - - - - - - 2.17 3.81 - - - - - - - - - - 3.07 - - - - - 2.01 -
Bra018246 (GUN1)
 0.19 -4.69 -1.66 -1.11 0.4 1.96 -0.62 0.24 -2.24 -3.1 - 1.88 1.83 2.41 1.56 0.81 - -2.02 - 0.2 - - -3.53 -1.02 -1.38 -1.76 -1.49 -4.87 -1.63 -1.5 -0.65
Bra018247 (GUN1)
 -1.54 - -1.08 - 0.69 1.25 -2.38 0.0 -3.67 - -2.73 1.35 1.8 2.31 1.74 1.21 - -0.91 - 0.28 -0.8 - -0.51 0.24 -2.09 - -1.43 -0.06 -0.56 -0.53 -0.01
Bra018656 (NRT2)
 - - - - -0.67 1.69 0.11 - - - - -0.63 2.83 - 1.4 1.2 -0.44 - 0.85 - - - - - -0.34 1.33 - 1.69 2.11 - -
- - - - 2.97 - - - - - - - 3.03 - - - - 3.56 - - - - - - - 1.68 - - - - -
Bra020245 (AGL62)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra020555 (AGL35)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra020694 (CIB2)
 - - - - - - 1.53 - - - - - 3.53 - - - - 1.64 - - 2.65 - - - - - - - - - 2.85
- -3.98 -1.58 -2.56 -0.85 -0.97 -0.86 -1.57 -1.74 -0.84 -0.7 -1.5 1.35 0.19 0.03 0.19 -0.06 2.7 0.3 -0.27 -0.95 -1.68 0.77 0.53 0.4 -0.47 -0.74 -0.13 0.95 -0.5 0.14
- -3.37 -1.21 - -0.45 1.12 -3.02 -2.73 -0.85 -0.59 -0.63 -0.56 2.07 2.14 1.05 0.7 0.35 2.04 -0.67 1.2 -1.92 0.04 -0.03 -0.68 -2.82 - -3.69 -1.57 -2.65 -2.77 -1.39
Bra021283 (SURF1)
 0.18 -1.71 -0.03 -0.35 0.21 -0.43 -0.69 -0.09 -0.89 -0.28 -0.69 0.14 -0.05 0.98 1.75 0.51 0.3 -0.44 -0.33 -0.38 -0.35 0.23 0.31 -0.26 -0.3 -0.46 -0.55 -0.4 -0.1 0.19 -0.1
Bra021481 (ENODL16)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 4.06 - - - - 3.85 - - - - - - - - - - - - -
Bra022890 (NOT9c)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
-1.23 -0.55 -0.35 -1.0 -1.09 -1.22 -0.19 -1.77 -1.33 -1.68 -0.88 -0.43 1.64 0.0 -0.68 0.18 -0.37 2.44 -0.17 0.39 -1.07 -0.11 -0.67 0.13 -0.28 0.71 -0.09 -0.53 -0.34 -0.09 0.39
- - - - - - - - - - - - 3.93 - - - - 3.07 - - - - 0.05 - - - - - - - 2.67
Bra024767 (UMAMIT24)
 - - - - - - - - - - 0.95 - 2.87 - - - 1.34 4.06 - - - - - - - - - - - 1.32 -
Bra025362 (MIF2)
 - - - - - - - - - - - - 4.24 - - - - 2.6 - - - - 2.59 - - - - - - - -
Bra026763 (PCP1)
 - - - - - 2.45 - - 1.04 - - 1.43 2.72 1.65 2.32 0.4 - 0.23 0.09 - 0.32 - - - - - - - - - 0.31
Bra026870 (DIC3)
 - - - - - 0.42 - 0.39 - 1.38 - - 2.33 - 3.0 - - - - - - - 3.09 - - - - - 1.44 - 0.55
- - - - - - - - - - - - 4.12 - - - - 3.76 - - - - - - - - - - - - -
Bra027894 (CSLA14)
 -0.85 -1.51 -0.57 -1.47 1.11 0.64 -1.27 -1.0 -0.7 -0.66 -0.08 0.78 -1.19 1.48 0.73 0.75 -0.16 -1.08 -0.53 0.04 -0.23 -2.63 0.94 0.42 0.87 -0.42 -0.23 -0.42 0.21 -1.57 -0.11
Bra028063 (MYB93)
 - - - - - - - - - - - - 4.23 - 0.27 - - 3.16 - - - - 1.05 - - - - - - - -
- - - - - - - - - - - - 3.74 - - - - - - - 3.48 - - - - - - - - 2.69 -
-0.63 -0.53 0.91 -0.57 -0.21 0.66 -0.25 -0.78 -0.45 -0.94 -0.99 -0.17 1.19 0.81 1.4 0.86 -0.22 0.1 -0.25 -0.45 0.23 -0.13 0.43 -0.09 -1.31 -1.28 -0.67 -0.38 -0.44 -0.82 -0.49
- - - -1.56 0.56 - 0.26 -0.07 - -0.87 0.48 -0.5 2.16 1.31 2.77 0.69 0.6 0.88 -0.51 0.22 -0.93 0.33 0.77 - - - - - - -1.76 -
Bra028792 (SRK2D)
 0.9 1.18 -0.21 0.12 0.48 1.34 -0.34 1.6 - -2.63 - 0.09 1.73 -0.66 2.13 -1.37 0.24 0.75 0.54 -0.28 0.2 -0.72 -1.6 - - - - - - - -
Bra030010 (OBP1)
 - - - - - - - - - - - - 3.04 - - - - 4.11 - - - - 2.47 - - - - - - - -
Bra031824 (CEP5)
 - - - - - - - - - - - - 3.97 - - - - 3.93 - - - - - - - - - - - - -
Bra032178 (GALT6)
 - - - - - - - 2.59 - - - - 2.22 - - 3.35 - 2.93 - - - - - 1.34 - - - - - - -
Bra032846 (RSL4)
 - - - - - - - - - - - - 3.53 - - - - 4.28 - - - - - - - - - - - - -
- - -0.01 - 2.28 0.38 -0.37 - -1.72 -1.07 -2.77 -2.57 2.97 -0.75 0.71 -1.34 - 2.31 - -0.55 -2.54 -2.66 1.74 0.98 -2.29 - - - - - -
Bra036662 (SLAH1)
 - - - - - - - 1.31 - - - - 3.24 - - - 2.18 3.86 - - - - - - - - - - - - -
- - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra037959 (HSP17.4B)
 - - - - 0.01 0.85 - - -2.08 -2.92 - - 2.61 -0.06 1.96 -2.65 - 3.6 - - -0.6 - 1.91 - - - - - - - -2.48
- - - - - - - - - - - - 4.06 - - - - 3.84 - - - - - - - - - - - - -
-4.77 -4.29 -2.8 -3.51 -1.43 0.61 -0.79 -1.2 0.83 -1.0 -4.77 1.56 0.68 2.02 2.63 1.37 0.14 -0.56 0.87 -0.52 0.68 0.98 -7.37 -4.36 -5.15 -5.91 - -6.25 -4.72 - -3.82
Bra039023 (VPS32)
 - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
Bra040638 (ACP)
 - - - - - - -0.58 - - - - - 4.24 1.64 - - - 1.71 - - - - 2.35 - - - - - - - -
Bra040906 (RidA)
 - - - 2.09 3.21 - - - - - - - - - - - 2.33 3.64 - - - - - - - - - - - - -
Bra041072 (scpl31)
 - - - - - - - - - - - - 3.23 - - - - 3.71 - - - - 3.09 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.