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Heatmap: Cluster_404 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra008107 (alpha-DOX2)
 -0.14 -0.18 0.03 0.14 0.58 0.81 0.38 -0.22 -0.7 0.08 0.22 -0.69 -0.04 0.7 -0.19 0.51 -0.08 -0.65 0.26 -0.63 -0.29 0.06 -0.73 -0.24 0.05 -0.35 -0.09 -0.21 0.08 -0.46 0.24
-0.1 0.21 0.29 -1.24 0.77 0.85 0.71 0.31 -0.86 0.12 0.48 -0.85 0.69 0.76 0.77 1.19 -0.29 -0.57 0.25 -1.62 -0.1 0.16 0.77 -1.67 -1.66 -1.75 -1.5 -1.56 -1.4 -0.91 -0.49
Bra039301 (TMP-A)
 -0.21 -0.49 -0.36 0.34 0.52 0.41 0.39 -0.42 0.11 -0.15 0.29 -0.54 -0.81 0.32 0.36 -0.02 0.35 -0.84 -0.33 -0.32 0.17 -0.4 -1.34 0.26 0.3 0.2 0.07 -0.25 0.1 -0.16 0.53

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.