Heatmap: Cluster_592 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
0.55 -0.25 -0.37 -0.69 0.17 0.44 -0.32 0.61 -1.2 -0.59 -1.02 -0.92 -1.13 0.86 1.58 0.54 -1.25 0.1 -0.73 -4.85 -1.32 -0.25 1.19 0.46 -0.02 -0.16 0.1 -0.49 0.03 -0.35 0.18
Bra015215 (STY46)
1.69 0.26 0.72 0.01 0.17 -0.32 -0.46 -0.02 -0.88 -0.79 -0.41 -0.83 -1.92 0.54 0.47 0.36 -1.24 0.33 -0.48 - -1.97 -0.06 0.5 -0.08 -0.38 -0.54 0.11 0.33 -0.2 0.19 0.76
-0.01 -0.52 - - -1.78 -0.95 -1.1 2.25 -0.49 0.07 -0.41 -0.22 -1.74 1.09 2.35 0.9 -0.25 0.14 - - -1.91 0.92 1.08 -0.36 - - 1.21 -0.73 - -0.8 -
-0.53 -0.86 -1.57 -1.19 0.39 0.37 0.54 0.1 0.03 0.34 -0.18 -0.09 -1.56 0.33 0.69 0.03 -0.9 -0.61 0.04 - -0.6 0.65 0.39 0.21 0.56 -0.4 0.57 0.39 0.47 0.1 0.15
-0.22 -0.61 -1.83 -1.64 0.56 0.37 0.33 -1.22 -0.39 -1.06 -1.84 0.21 -1.06 2.0 0.97 0.45 -1.73 -0.42 -0.88 - -0.12 0.97 -0.16 1.48 -3.11 -3.48 0.9 -1.01 -0.03 -0.46 0.62
Bra039903 (AtcathB2)
-0.26 -2.16 -1.62 -2.39 1.29 0.72 -0.72 -1.88 -0.11 -0.29 -0.99 -0.57 -2.21 1.52 1.71 0.2 -2.19 -0.22 -0.17 -5.57 -1.22 0.43 1.01 0.05 -0.03 -0.7 -0.11 0.29 0.65 -0.15 -0.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.