1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_109 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000363 (MCR)
 - - -0.51 - 2.73 -0.47 - 3.09 - - - - - - - - - - -0.31 2.8 - 0.39 1.53 - - - - -0.14 - - 0.65
- - -0.96 - - -0.84 - 3.27 - - 1.12 - 2.52 -0.73 - -0.66 0.21 1.94 -1.07 - - 0.16 -0.77 - - 1.99 - - - - -
- - - - - - - 3.56 - - - - 2.78 - - - 2.62 - - - - - 2.64 - - - - - - - -
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra001831 (ROXY3)
 1.06 0.42 -0.31 1.08 -2.06 -0.16 0.66 1.81 -0.83 0.09 0.24 0.48 1.57 -5.66 -4.69 -0.21 -0.46 - -3.06 -0.87 0.41 -0.5 -0.8 -0.43 0.13 -0.23 -0.09 0.09 -0.86 -1.05 -0.66
Bra002534 (PUM18)
 - - - - 1.53 - - 3.55 - - - - - - - 3.33 - - - - - - - - - - - - - 2.66 -
Bra003756 (BBD1)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra003777 (FAB1)
 0.23 -0.19 -0.35 0.16 0.15 -0.14 0.38 0.75 0.26 -0.3 -0.22 -0.36 0.58 -0.29 -0.32 0.2 0.02 -0.85 -0.33 0.11 -0.0 -0.21 -0.68 0.04 0.09 0.04 -0.21 0.13 0.09 -0.38 0.36
Bra003941 (CAR9)
 - - -0.97 1.72 - -0.39 1.18 2.67 0.95 -0.12 -2.33 -0.17 -0.63 - -2.08 - 0.37 -2.46 - -1.33 - 0.38 -1.3 - 0.18 -0.04 -2.4 -1.12 1.68 0.04 1.27
-1.45 -1.47 0.15 0.8 -0.8 0.05 0.31 1.64 -0.83 -0.09 -0.6 0.07 0.6 -0.26 0.17 -0.86 -0.45 0.84 -1.01 -1.1 -0.77 -1.25 1.41 -0.57 -0.58 0.49 -0.63 -0.19 0.02 -0.02 -0.33
Bra004093 (AGM2)
 - - - - - - - 4.29 - - - - 2.47 - - - - - - - - - - - - - - 2.54 - - -
- - - - - - - 4.36 - - - - 3.39 - - - - - - - - - - - - - - - - - -
Bra005789 (SDP1)
 -0.68 0.09 0.59 -0.11 -2.0 -3.71 -0.28 1.65 -0.89 -0.74 -0.78 0.42 1.54 0.01 -1.76 -2.28 -0.31 0.38 -1.51 -1.86 -0.61 -0.86 0.8 0.33 0.09 0.53 0.33 0.15 -0.09 -0.08 0.51
Bra006177 (ISTL10)
 1.81 - 2.57 0.84 - - - 2.38 - - - - 1.62 - - 0.58 - - 0.55 - - - 2.79 - - - - - - - 0.67
Bra007296 (CBL)
 0.03 -1.92 -0.63 -1.0 -0.45 -0.06 0.79 1.37 0.22 0.02 0.36 -0.26 0.39 0.53 0.33 0.22 0.44 -0.62 0.27 -0.2 0.29 -0.2 -0.1 0.11 -0.12 -0.23 -0.29 0.16 -0.6 -1.25 -3.14
-2.48 -0.4 -1.72 - -0.34 -0.46 0.97 1.19 - 0.81 0.84 -0.74 1.12 2.03 0.12 1.15 1.58 0.47 -0.51 0.31 0.79 -0.16 0.42 - - - - - - - -
Bra007714 (GRXS6)
 0.4 2.08 1.49 0.98 -4.29 -3.12 0.0 1.64 -3.81 -0.33 -1.32 -0.12 0.92 -5.61 -2.1 -0.56 -0.13 -3.33 -2.69 -0.8 0.06 0.01 -1.9 -0.78 0.26 0.4 0.59 -1.4 -2.5 0.06 0.14
Bra009192 (HscB)
 -0.24 -0.01 -0.48 -0.31 0.14 0.27 0.23 0.69 -0.28 -0.41 -0.1 -0.09 0.66 0.47 0.18 0.45 0.25 0.36 0.18 -0.23 -0.08 0.23 -0.15 -0.43 -0.32 -0.52 -0.32 -0.54 -0.41 -0.64 0.05
Bra009243 (NEN1)
 0.35 -0.28 0.02 0.77 -0.0 -0.01 0.26 0.74 -0.14 -0.12 -0.2 -0.31 0.28 -0.33 0.17 0.25 0.54 -0.67 -0.36 -0.01 0.15 -0.47 -0.03 -0.37 -0.05 0.43 -0.63 -0.03 -0.62 -0.15 -0.86
Bra010336 (ADP1)
 0.21 1.72 -1.67 -0.15 -2.34 -3.03 0.79 2.05 -4.13 -0.23 -1.53 -1.54 1.13 -1.57 -2.16 -0.22 -1.06 2.18 0.65 -0.23 -2.11 -1.49 1.48 -1.41 -2.85 - -3.84 -3.64 -2.25 -0.84 0.75
Bra011285 (REM1)
 -0.51 - -0.6 - -0.57 -1.74 0.82 2.06 -1.57 -0.29 -3.85 -0.24 2.26 1.34 0.55 0.32 1.01 2.12 1.17 -2.09 -1.38 -1.26 -0.92 - - - - -2.48 -3.47 - -2.44
- 1.44 - - -0.43 - 2.45 2.8 - -0.48 -0.49 0.37 0.67 -0.19 - - - 2.05 - 0.59 1.53 -0.59 -0.48 - - - - - - - -
Bra011859 (CYP96A12)
 -2.62 -1.63 -0.13 -1.89 -0.52 2.88 -1.17 0.35 -0.47 -4.11 -0.1 -0.64 0.53 -0.05 -0.95 -0.98 -0.86 2.83 -0.52 -1.15 -1.28 -2.12 0.98 -0.95 -2.07 - -1.02 -1.15 -2.9 -2.33 -1.51
- 1.47 - 1.54 - 0.56 -0.5 2.17 - - - - 0.9 2.1 2.55 - - -0.47 -0.62 -0.31 - 1.48 - - -0.34 - - - -0.21 - -
- - - - - - 1.47 2.3 - 0.76 1.79 - 1.89 1.06 1.19 0.98 1.79 - - - 2.22 - - - - - - - - - -
Bra013729 (PERK6)
 - - - 1.09 - - 1.58 3.13 - - - - 3.45 - - - 2.05 0.11 - - - - -0.02 - - - - - - - -
0.24 2.34 - - 0.9 1.04 - 0.71 - - - - 1.16 1.62 2.11 - - - - - - 0.93 1.51 -0.17 - - - 0.96 0.01 -0.01 -
- - - -0.5 0.21 -0.74 - 1.54 0.13 0.14 - 1.35 2.19 - -0.42 -0.53 0.36 1.8 -0.96 - - 0.93 0.36 1.52 - - 0.27 - -0.68 0.77 -
0.03 -0.82 -0.74 1.1 -0.12 0.1 0.13 0.85 0.1 -0.27 -0.08 0.27 0.89 -1.15 -1.66 0.2 0.13 -1.4 -1.7 -0.11 0.22 -0.42 -1.93 0.09 0.48 0.52 0.37 0.28 0.45 -0.72 -0.54
- 3.03 1.41 2.74 -0.44 - - 2.93 - - -0.69 - - - - -0.26 - - - - - - -0.53 0.39 - -0.15 - - -0.38 - -
Bra015652 (TTM3)
 -5.75 -6.71 0.12 - -1.17 -1.46 -0.41 1.44 -1.03 -0.93 0.09 -5.89 1.99 0.3 -4.77 -0.07 -6.9 1.05 0.19 -0.13 -0.55 -0.88 0.86 0.19 0.47 0.43 0.82 0.33 -0.82 0.03 0.75
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.32 - - - - - - - - - 2.42 - - 2.53 - - - - - - - - - -
Bra018240 (DOR)
 - 0.99 2.03 - - 2.39 - 3.08 - - - - - - - - 0.94 3.22 - - - - - - - - - - - - -
- - - - - - 2.57 2.7 - - 2.69 - - - - 2.33 - - - 2.82 - - - - - - - - - - -
-0.05 1.28 -1.55 -0.86 -4.77 -0.32 -0.08 2.67 -1.97 - -1.01 - -0.67 -3.18 -6.18 -0.36 -0.69 1.59 -1.05 -0.82 -0.32 -0.94 -0.05 -1.48 -1.07 0.93 -12.14 1.11 0.17 0.58 0.86
Bra021304 (mTERF13)
 - - - - - - - 3.82 - - 2.75 - - 2.79 - - - - - - - - - - - - 1.71 - - - -
Bra021740 (UGT74D1)
 -0.25 -0.73 -0.82 0.01 -0.07 0.33 0.92 1.49 -0.51 0.09 -0.25 0.33 1.25 0.03 -0.1 0.65 0.75 0.92 -0.45 -0.04 0.39 0.03 -1.42 -1.42 -1.36 -1.69 -1.47 -1.18 -1.39 -1.86 -0.35
Bra022013 (PTR3)
 - - 2.83 - - - - 2.39 - - - - 3.02 - - - - 1.74 - - - - 2.85 - - - - - - - -
- - - - - - - 4.37 - - - - - - - - - - - - - - 3.37 - - - - - - - -
Bra023100 (CVY1)
 1.18 -0.67 -2.83 -2.26 1.12 1.06 -1.13 2.3 -2.65 -0.89 -0.92 0.11 0.06 -2.38 2.7 -1.3 -0.06 0.43 0.16 -0.84 -0.16 - -2.41 - 0.28 - - -0.3 -2.48 -2.52 -2.5
Bra023486 (WER)
 0.07 - - -0.75 - -2.34 -0.56 2.83 -0.13 - -0.46 -0.92 2.15 0.05 1.09 -2.0 -1.18 -0.46 -1.13 1.5 -2.24 1.88 1.58 - - - - - - - -
Bra023688 (ROXY10)
 0.59 1.98 1.18 1.16 -3.06 -2.23 0.41 1.74 -0.76 0.18 0.26 0.73 -0.13 -3.79 -2.0 -0.18 0.6 -4.84 -1.43 -0.19 0.93 0.53 -3.24 -1.23 -0.88 -0.48 -0.65 -3.31 -4.63 -1.44 -1.81
Bra023883 (ROXY3)
 0.61 1.37 0.14 1.12 -2.79 -1.88 -0.54 2.0 -0.37 -0.59 0.0 -0.35 1.72 - - -0.23 -1.02 - - -1.5 0.57 -0.37 -2.07 -0.67 -0.27 -0.01 1.14 -0.52 -0.97 -0.68 0.38
Bra024824 (AFA1)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
-0.31 -0.14 -0.57 2.1 0.16 0.08 -0.2 0.45 -0.85 -0.27 -0.92 -0.78 2.27 -0.95 -1.38 0.01 -0.57 -1.03 -2.27 0.06 -2.1 -1.01 0.23 -0.01 0.09 -0.72 -0.35 0.08 -0.34 -1.3 -0.64
Bra025551 (AGP24)
 - - - - 0.78 - 2.45 0.17 0.69 2.05 -0.41 -1.34 -1.03 0.1 -0.94 -1.23 - - 1.64 - 0.9 1.06 -1.12 -1.21 - - -1.15 - -0.02 0.46 1.33
-0.93 1.45 1.33 1.55 -3.73 -5.4 0.23 1.66 -1.02 -0.22 -0.33 0.15 1.46 -2.74 - -0.78 -0.12 -1.56 -1.16 -0.27 -0.21 0.15 -0.74 -1.51 -0.83 0.63 -0.84 -2.0 -1.51 0.16 0.34
Bra025851 (IDM3)
 -1.96 -0.32 0.8 -1.65 -0.57 -2.2 0.39 2.1 -0.21 0.8 1.09 0.29 0.48 -0.73 -2.52 -0.47 0.64 0.41 0.09 -0.18 0.23 0.18 -0.42 -0.54 -0.19 -0.28 -0.94 -1.27 -1.03 -1.73 -0.85
- - - - - - - 3.04 - - - - - 2.97 - - - - - - - - 3.42 0.96 - - - - - - 1.2
- - -1.63 - 0.47 -0.28 -1.1 0.46 - 0.47 0.02 0.03 2.26 - 0.01 -0.61 1.72 0.93 1.7 - -0.3 - 1.43 0.36 - 0.53 -0.25 -1.72 -1.73 - -0.64
Bra027343 (CASPL2A2)
 0.9 -0.98 0.31 1.07 -2.56 -0.67 0.71 1.25 -0.68 -0.71 -0.1 0.71 1.02 - -0.89 -0.16 -0.47 -2.18 -2.06 -1.84 0.02 -2.34 -0.16 0.04 0.24 1.14 -0.99 0.27 -0.84 0.71 0.41
Bra028779 (KIPK)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra029353 (bZIP70)
 1.56 1.51 - 2.16 - - - 2.92 - - - - 3.72 - - - - - - - - - - - - - - - - - -
- 2.85 0.7 - 1.82 0.86 0.6 3.17 - - - - - - 1.16 - - - - - - - - - - - - - 2.04 - -
0.82 -1.23 1.03 - - 0.03 0.5 3.28 - - - - 2.24 - -0.25 - 0.89 1.95 - -1.5 - 0.9 -1.57 - - - - - - -1.41 -1.45
Bra031204 (PE11)
 - - - - - - 2.81 2.95 - - - - - 2.07 2.16 - 2.02 - - - - 1.82 - - - - - - - - -
-4.17 -3.4 -4.01 -3.06 -1.78 -0.33 -1.09 0.9 0.22 0.3 -0.77 0.08 0.83 0.48 0.78 -0.62 1.1 -0.72 -0.93 0.94 -0.76 0.08 1.67 0.56 0.48 -2.4 -0.14 -0.46 0.07 -0.3 0.11
Bra032367 (EF1Bb)
 - - - - - 2.34 - 3.32 - - - - - - - 2.52 - - - - 2.25 - - - - - - - - - 2.44
-0.2 -0.01 0.16 -0.21 -0.48 -0.51 -0.16 0.58 -0.75 -0.43 0.34 -0.26 0.27 0.38 0.33 0.01 -0.23 0.04 -0.32 -0.36 -0.37 -0.23 0.33 -0.15 -0.05 -0.15 0.04 0.16 0.14 0.2 0.71
Bra032815 (ALDH2)
 -4.6 -4.04 0.11 -3.08 -1.3 -1.1 -0.23 1.56 -0.54 -0.87 0.19 -1.7 1.65 0.52 -0.7 -0.13 -3.15 0.87 0.39 -0.31 -0.34 -0.88 0.5 0.23 0.64 0.31 0.64 0.21 -0.79 -0.39 0.47
1.05 - -1.83 -1.76 0.9 2.0 0.32 - 0.14 -0.03 0.41 -0.98 -0.17 0.7 0.46 -0.74 0.59 2.51 0.49 -0.72 0.54 -0.88 -1.84 - - - - - 0.1 - -1.86
-0.43 1.47 1.24 2.47 - -5.36 -0.28 1.27 -1.28 0.12 -1.53 0.4 2.78 -4.25 - -1.15 -1.8 -3.55 -3.01 -3.69 -0.96 -2.92 1.81 -3.78 -4.06 -2.59 -3.06 - -3.23 -2.32 -1.54
Bra033552 (LAZ1)
 -0.06 -0.07 0.01 -1.0 0.5 0.58 -0.12 -0.49 -0.09 0.12 -0.1 0.22 -0.55 0.93 0.97 -0.3 -0.11 0.79 0.82 -0.57 -0.38 0.19 -0.15 -0.72 -0.54 -0.8 -0.6 -0.58 -0.31 -0.49 -0.09
Bra033624 (CYP96A8)
 - - - - - - - 3.55 - - - - 3.77 - - - - 2.49 - - - - - - - - - - - - -
Bra034587 (RSL2)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra036383 (XS2)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
- - 1.1 2.22 - - 0.63 3.46 - - - - 1.14 - - - - - - - - - 0.98 - - 2.5 - - - 0.88 -
Bra036579 (RR24)
 - - - - - 1.87 - - - - - - - - 3.15 - - 3.11 2.65 - - - - - - - - - - 1.85 -
- -0.79 - - 1.7 -0.15 -1.31 1.14 -0.06 - - - - 1.76 1.31 0.1 -1.09 0.78 - 1.93 - -1.29 2.22 - - - -1.0 0.69 - - 1.36
- - - - - - - 4.5 - - - - - - 3.08 - - - - - - - - - - - - - - - -
Bra038857 (PIRL6)
 -0.05 0.01 1.53 - - 2.55 - - -0.64 - - -0.58 - - - - -0.35 2.26 0.31 -0.37 - 1.39 - 1.03 -0.16 1.09 1.52 -0.25 - - -
Bra038907 (LTP12)
 - - - - 2.06 - 2.39 0.9 - 2.54 2.93 - - - - 1.18 - 0.94 - 1.07 - - - - - - - - - - -
-1.85 -1.3 -1.25 -0.96 -1.35 -1.43 -0.1 2.08 -0.66 0.13 -0.06 0.15 1.84 0.84 0.41 1.89 1.2 0.62 -0.52 -0.35 0.54 0.75 -1.7 -6.1 -4.65 -3.03 -5.56 -3.01 -4.06 -4.46 -3.92
Bra040229 (ARA3)
 0.63 2.25 -0.23 1.69 0.54 -1.04 0.45 0.94 - -0.71 - -3.52 -3.79 -2.38 -0.17 -0.36 - -3.62 - - - 0.44 0.65 0.5 0.28 0.73 0.3 -0.05 -0.48 0.16 0.5
- - - - - 3.06 - 2.76 - - - - - - - - - 3.48 2.24 - - - - - - - - - - - -
Bra041071 (CLS)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.