1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_735 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
0.23 0.54 0.67 0.38 0.52 -0.24 0.09 0.08 -0.15 0.05 -0.2 -0.09 -0.63 -0.12 -0.34 -0.08 -0.25 -0.18 -0.23 -0.36 -0.6 -0.24 0.36 -0.11 -0.31 0.25 -0.34 0.05 -0.0 0.66 -0.87
Bra016230 (MMP)
 -0.25 0.3 0.94 0.43 1.04 1.28 -2.22 -1.69 0.38 -0.07 -0.3 -0.11 -1.52 -0.3 0.07 -0.69 -0.46 -1.28 -0.33 -0.9 -0.16 0.23 1.39 -2.61 -0.64 1.11 -1.52 0.28 -0.37 0.34 -3.21
Bra028165 (LRK10L3)
 -0.02 0.44 0.62 -0.16 0.56 0.55 -0.49 -0.81 -0.08 -0.11 -0.39 -0.07 -1.7 -0.24 0.03 0.05 -0.3 -1.15 -0.28 -0.31 -0.34 -0.17 0.5 -0.25 -0.28 0.96 -0.16 0.23 0.42 0.68 -0.74
0.3 0.6 0.78 0.16 1.08 -0.04 -0.65 -0.88 0.32 -0.11 0.04 0.31 -1.43 -0.32 -0.62 0.46 0.22 -0.58 -0.11 -0.7 -0.76 -0.47 0.79 -0.56 -0.59 -1.55 -0.84 -0.07 0.34 0.92 -0.44

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.