Heatmap: Cluster_342 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra014833 (LTPG4)
- - - - - - - - -0.32 -0.19 -0.39 -0.29 2.6 - 1.6 - - 3.37 -0.04 2.69 - - -0.21 - - - - - - - -
Bra018491 (LTPG4)
- - - - - - - - - - - - - - 2.81 - - 4.14 - 2.67 - - - - - - - - - - -
- - - - - -0.89 - - - - - -0.79 - 2.48 0.36 -0.67 0.23 4.06 1.13 - 0.18 - 0.22 - - - - - - - -
Bra038788 (MRP4)
- - - - - - - - - - - - - 2.26 2.39 - - 3.97 0.69 - - - 1.9 - - - - - - - -
- - -1.74 - -2.5 0.38 -0.79 -1.16 0.5 0.39 -3.79 0.19 -1.13 2.43 1.17 -1.44 -2.57 3.57 -1.38 -1.22 -0.92 0.4 -2.63 - -3.32 - -3.45 - - -0.93 -2.33

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.