Heatmap: Cluster_152 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001976 (BLH7)
0.96 0.89 0.8 0.83 1.95 2.13 0.92 0.75 1.1 1.05 1.21 1.01 0.97 1.28 1.93 0.9 0.68 1.14 1.2 0.76 0.86 0.87 0.32 0.46 0.54 0.37 0.46 0.57 0.77 0.46 0.8
Bra002130 (SAUR21)
37.74 30.27 50.28 33.2 35.07 35.25 26.58 24.39 25.91 25.81 42.76 50.67 29.73 45.85 34.63 34.93 35.22 29.29 43.89 44.96 38.87 47.79 1.69 7.59 7.59 15.35 5.53 10.76 9.95 13.64 5.39
Bra002590 (PPO)
8.45 9.03 7.29 8.41 10.02 10.98 6.73 5.82 8.56 7.13 7.45 7.55 6.96 11.11 12.08 7.85 7.6 6.19 6.84 7.83 7.25 7.55 4.25 3.62 3.56 4.63 3.56 5.09 4.27 3.64 3.27
Bra002717 (GEM1)
19.89 17.49 38.13 18.62 30.12 31.21 32.46 33.18 36.82 31.4 53.86 56.61 42.32 39.63 18.46 30.85 34.77 38.06 51.04 55.29 40.14 50.18 0.1 0.0 0.02 0.0 0.02 0.03 0.0 0.07 0.03
6.47 7.52 7.29 7.39 9.62 9.51 7.99 8.21 5.73 10.68 7.61 6.7 9.74 8.64 6.37 7.78 8.44 7.62 7.73 6.23 8.65 9.76 1.74 2.65 2.16 1.75 2.07 3.46 2.74 2.44 2.52
Bra005276 (AGC1-9)
10.25 5.92 10.43 5.34 9.6 7.98 7.64 10.01 8.88 13.25 9.03 10.33 8.87 7.85 11.03 14.49 10.98 8.06 8.4 9.72 12.33 13.54 0.9 1.02 1.03 0.27 1.55 0.05 0.29 1.22 0.82
Bra005998 (CI51)
31.25 36.01 30.65 27.92 42.25 35.74 42.9 33.96 35.85 36.42 37.11 37.53 44.11 47.45 52.29 44.02 42.67 44.94 43.05 42.97 29.31 46.94 18.27 11.82 11.48 12.42 12.4 11.98 13.43 14.48 18.13
Bra006230 (KNU)
1.14 0.79 0.03 0.09 0.12 0.54 0.19 0.31 0.41 0.29 0.26 0.45 0.09 1.18 1.08 0.51 0.28 0.28 0.65 0.54 0.15 0.17 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra007133 (ARF17)
2.34 2.61 1.77 0.95 4.8 3.39 1.33 0.78 2.13 1.78 2.18 2.28 2.82 2.82 4.36 2.06 2.7 3.01 1.35 1.65 1.91 1.83 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
6.48 6.25 5.67 5.99 8.57 7.58 5.1 3.64 6.34 3.44 6.6 5.43 5.13 7.99 9.3 5.53 5.53 5.71 4.89 4.71 4.78 5.5 1.02 1.57 1.93 1.28 1.79 2.35 2.37 1.93 1.88
Bra007964 (DTX14)
3.8 4.56 3.93 3.98 7.2 8.55 4.16 3.71 3.87 3.56 3.47 3.53 4.0 5.73 6.79 5.72 3.05 3.35 3.29 3.66 3.5 3.79 1.62 0.46 0.45 0.45 0.65 0.64 0.47 0.87 0.96
0.38 0.19 0.22 0.26 0.75 0.79 0.25 0.15 0.09 0.34 0.25 0.15 0.35 0.56 0.64 0.19 0.04 0.16 0.1 0.23 0.23 0.33 0.1 0.07 0.04 0.1 0.07 0.07 0.06 0.03 0.08
61.83 44.12 49.1 37.57 77.35 71.91 34.56 23.26 21.18 35.67 28.38 23.41 42.52 50.78 63.33 31.01 18.16 55.0 29.42 32.54 42.44 40.85 38.02 22.37 22.4 21.54 16.54 22.58 25.19 15.25 20.51
20.85 18.88 14.29 11.03 22.37 20.4 24.96 25.19 18.4 21.35 17.85 21.86 30.87 38.09 47.4 27.02 28.36 31.86 29.69 22.91 21.55 22.12 9.66 3.87 4.78 2.68 3.79 2.94 4.37 2.12 3.47
Bra011478 (SSN2)
11.54 10.8 12.6 10.8 18.26 18.86 11.64 13.33 14.77 15.09 14.64 9.4 16.55 18.86 15.55 15.87 12.33 12.19 14.24 13.64 12.92 13.78 9.22 8.36 5.55 6.3 7.49 6.72 8.2 8.45 8.16
0.61 0.49 0.64 0.89 0.44 0.53 0.38 0.43 0.33 0.41 0.45 0.32 0.42 0.31 0.49 0.49 0.46 0.57 0.24 0.24 0.24 0.33 0.38 0.16 0.09 0.08 0.17 0.1 0.1 0.2 0.27
Bra012389 (SPDS1)
2.86 1.77 2.49 2.57 2.4 1.89 2.07 0.89 0.44 0.3 1.09 0.85 0.67 0.77 1.05 1.67 1.31 0.09 0.27 0.65 0.5 0.33 0.35 0.16 0.11 0.09 0.12 0.21 0.14 0.1 0.4
31.75 22.95 31.19 27.08 42.17 31.07 17.76 13.45 16.77 13.38 14.57 22.27 15.79 31.62 24.46 11.13 13.4 18.36 12.66 16.0 17.24 11.22 0.09 0.37 0.04 0.05 0.0 0.0 0.0 0.04 0.0
Bra013255 (UBC37)
1.87 2.26 1.91 2.48 3.02 1.99 2.37 2.37 2.06 2.12 2.4 1.7 2.57 1.92 1.78 1.81 1.61 1.43 1.73 1.89 2.21 2.0 1.31 1.15 0.78 0.59 0.9 1.23 0.8 0.59 0.63
Bra013370 (CMT2)
7.3 5.15 6.84 5.63 6.82 6.3 8.88 7.02 5.26 6.11 8.35 5.55 9.55 10.12 11.35 9.02 8.07 7.9 5.06 5.89 6.57 5.55 2.65 2.09 2.38 2.69 2.4 2.55 2.09 2.94 4.43
Bra014057 (RD21)
125.36 43.69 42.77 54.26 53.57 58.71 50.67 29.2 93.72 55.59 66.21 88.83 25.66 78.75 93.2 44.65 27.43 39.02 86.38 68.82 38.53 79.89 10.9 7.96 8.75 7.51 8.98 11.57 12.55 9.63 8.11
Bra014359 (FLL3)
8.66 7.37 9.38 7.03 11.08 10.26 7.65 5.9 8.41 8.37 7.84 8.63 7.19 8.55 9.94 7.78 7.73 6.88 6.36 8.16 7.23 6.91 4.62 4.06 3.74 3.48 4.27 4.72 5.76 4.49 3.96
Bra014415 (NGA2)
2.56 0.9 1.01 1.28 2.87 4.07 2.52 2.05 2.67 2.24 3.02 1.73 2.8 4.01 2.64 2.68 2.92 2.17 2.31 1.64 2.17 1.82 0.84 0.46 0.35 0.46 0.23 0.67 0.37 0.28 0.2
Bra014428 (PML4)
8.73 5.39 7.03 4.76 14.86 14.84 4.89 5.02 6.65 7.66 5.22 8.35 11.14 22.21 17.03 11.68 8.58 13.25 7.78 8.72 8.03 4.97 0.21 0.0 0.07 0.0 0.14 0.0 0.07 0.0 0.07
Bra014520 (MAP2B)
8.23 7.65 6.28 7.05 10.15 8.87 9.32 10.46 7.17 8.15 6.32 6.99 6.35 8.84 8.82 8.26 7.77 6.12 6.92 8.32 8.17 8.05 0.05 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra015554 (SIRANBP)
16.6 18.63 17.13 20.56 22.11 25.78 26.72 31.26 19.33 20.23 17.77 23.06 41.6 34.88 23.27 25.27 28.09 22.01 16.38 17.35 24.02 16.98 9.67 5.73 6.07 6.25 5.46 6.48 7.39 7.26 8.68
1.18 0.75 0.88 0.61 2.1 1.68 1.81 1.71 1.62 1.61 1.44 1.28 2.6 1.34 2.04 1.75 1.87 1.56 1.43 1.5 1.36 1.54 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0
3.89 3.71 5.2 6.53 7.41 11.39 4.76 4.32 6.46 3.22 3.7 5.6 3.75 7.63 8.55 2.25 3.95 2.44 3.58 4.79 5.21 5.82 0.01 0.04 0.02 0.01 0.02 0.07 0.09 0.01 0.01
90.33 93.38 82.55 94.08 118.89 99.15 89.81 83.67 56.82 79.91 96.28 84.51 142.36 125.86 75.77 98.58 110.68 120.56 77.02 79.41 97.57 117.02 41.47 23.34 28.48 25.69 34.52 24.74 17.54 22.52 26.99
Bra016276 (BGLU40)
13.61 9.72 9.58 8.48 15.75 16.97 11.95 7.89 8.16 11.21 11.16 14.15 9.78 14.4 16.48 19.67 13.69 9.72 9.4 13.95 13.2 8.96 2.0 0.68 0.82 0.86 1.19 1.09 1.37 1.2 2.81
Bra016768 (CCS)
83.07 90.36 111.44 82.98 108.53 70.71 81.2 64.21 75.33 52.6 98.54 75.64 104.9 98.45 93.26 102.75 57.13 79.98 75.58 96.57 84.64 86.45 73.31 25.39 29.57 17.89 24.88 7.64 24.28 16.21 50.94
Bra017968 (LACS8)
96.68 70.7 97.07 53.53 76.01 64.02 75.25 99.34 93.18 84.1 120.07 83.47 79.06 94.18 138.48 100.61 86.4 110.54 101.05 98.61 129.07 147.78 8.27 1.9 12.25 4.55 19.24 0.36 3.57 11.87 6.84
Bra019088 (VHA-e2)
1041.59 1208.79 1338.86 1296.46 978.38 879.09 887.64 878.05 1047.09 1225.57 1177.32 1044.07 971.33 1361.03 1256.25 1103.79 1258.83 1530.73 1309.39 1409.64 1159.17 1195.77 397.81 572.53 554.06 653.06 668.74 589.12 609.92 743.98 717.5
Bra019384 (MPC3)
185.23 174.89 179.09 168.83 226.6 208.75 166.74 167.02 174.14 197.39 161.75 195.78 219.07 204.58 212.23 234.76 205.22 244.08 189.75 202.7 190.6 192.59 143.64 107.82 125.54 97.85 111.94 110.61 76.19 74.92 92.26
3.42 3.11 2.42 4.45 11.05 9.41 6.74 4.88 3.54 6.76 5.06 3.94 4.43 5.88 12.47 4.61 5.33 6.71 7.08 7.31 5.74 9.36 1.63 0.9 0.8 0.53 0.26 0.42 0.4 0.44 0.65
1.76 1.82 1.65 1.45 1.57 1.79 1.62 2.02 0.83 1.24 1.03 1.12 1.67 1.82 1.89 1.79 1.79 1.41 1.32 1.39 0.96 1.16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
13.66 11.73 21.15 13.87 16.76 17.9 21.72 24.14 16.4 18.08 20.86 20.38 21.8 17.51 18.31 25.07 19.15 14.68 16.47 21.18 20.06 19.89 7.83 10.22 11.78 12.95 12.06 14.22 12.48 8.36 10.19
57.11 54.48 63.03 72.54 80.38 77.19 76.89 50.53 54.93 61.17 55.91 54.45 45.8 82.27 62.77 68.47 61.15 40.79 39.03 62.97 55.21 58.28 36.97 21.24 13.69 19.44 14.22 24.92 18.3 14.76 11.83
Bra021993 (MDIS1)
0.65 1.07 0.85 0.68 2.91 2.24 1.67 2.1 1.48 0.96 1.28 1.05 3.12 1.51 1.68 1.78 1.95 1.55 1.81 1.6 1.58 0.9 0.25 0.19 0.17 0.21 0.14 0.15 0.24 0.07 0.18
3.11 5.46 4.85 3.06 9.98 6.94 4.83 4.59 4.87 3.81 5.03 3.97 5.16 6.69 7.82 6.0 5.73 7.17 5.62 5.32 5.91 5.51 1.13 1.11 0.94 1.0 1.1 0.69 2.13 1.77 1.47
Bra022949 (REN1)
57.69 64.52 57.58 49.66 79.48 70.47 74.01 74.48 53.47 53.12 55.85 54.63 81.8 59.21 72.96 76.46 74.27 59.54 55.97 63.48 59.11 59.3 44.36 38.07 33.09 32.69 36.76 33.55 35.31 37.59 42.82
Bra023413 (ATP5)
25.2 23.34 18.53 17.42 39.87 29.47 23.15 24.2 26.38 26.72 16.98 22.49 28.95 35.97 44.41 34.74 26.93 35.03 30.05 22.64 28.89 30.1 23.87 11.2 13.05 8.75 12.19 10.79 8.42 8.57 8.63
Bra024904 (ORC4)
1.73 2.77 3.24 2.48 3.12 4.08 2.1 2.35 2.15 1.99 2.43 2.01 2.49 2.79 3.23 2.61 2.25 1.83 2.82 1.96 2.44 2.72 0.87 0.2 0.25 0.23 0.14 0.2 0.14 0.19 0.34
Bra027507 (ARD4)
98.26 99.09 60.02 60.6 75.7 115.18 53.45 70.64 93.46 64.62 101.49 100.18 62.13 145.75 112.05 72.28 71.35 43.73 90.19 92.64 89.87 98.31 27.46 56.21 50.52 45.75 46.64 49.39 61.31 49.08 58.22
19.08 16.58 23.06 19.41 28.52 32.52 20.14 15.08 18.02 22.49 25.18 23.73 24.44 28.97 28.11 22.61 24.66 18.19 24.46 24.9 18.77 22.31 7.69 13.88 8.59 10.22 10.99 11.39 12.55 8.41 11.04
5.81 6.21 4.36 3.79 5.94 5.2 4.43 4.84 4.75 5.13 4.78 5.58 5.16 5.88 5.99 5.64 5.34 5.86 5.22 4.96 5.56 5.36 3.55 3.13 3.55 2.79 3.95 3.29 3.78 3.92 3.59
12.42 14.93 15.23 14.28 17.77 15.59 8.15 5.48 8.27 10.06 6.48 9.23 6.28 13.85 10.48 8.32 7.12 10.61 8.09 9.55 6.67 10.84 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra030948 (ABCG10)
3.39 3.49 1.72 1.88 2.8 2.6 1.99 1.78 3.68 2.23 2.68 4.26 2.52 5.37 3.7 2.7 3.05 2.21 3.9 3.76 2.99 2.83 0.65 1.71 1.8 1.95 1.93 2.47 2.08 1.46 1.22
Bra033026 (HUP53)
25.69 31.03 27.05 18.74 31.5 30.11 23.86 21.45 23.33 19.46 20.59 21.89 17.66 27.03 27.89 19.85 19.12 18.49 19.24 19.24 19.44 19.65 12.05 6.02 8.47 7.53 9.05 11.52 10.79 11.46 10.74
Bra033052 (RASD1)
1.99 2.86 1.78 1.79 2.29 2.33 2.71 3.19 1.09 2.68 1.38 2.65 4.09 3.15 2.58 3.79 3.26 2.32 1.96 2.64 2.35 2.39 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0 0.0
Bra034440 (CCT1)
74.24 72.94 83.42 56.11 133.3 125.78 85.59 63.39 75.4 47.57 57.47 82.56 44.46 89.52 115.49 47.5 100.31 67.38 38.83 72.8 78.14 71.94 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
5.98 5.65 6.59 6.98 9.58 7.73 6.14 7.93 6.06 5.25 5.66 6.34 10.83 9.92 10.08 8.07 7.35 8.18 8.33 6.95 7.3 7.77 3.61 3.02 2.34 1.79 2.59 2.21 2.5 2.46 3.72
12.93 13.62 11.48 10.51 15.26 14.89 14.31 12.74 8.96 9.35 9.96 8.63 9.3 15.83 15.56 16.96 13.81 5.75 13.52 12.47 10.54 10.59 0.88 5.0 5.36 4.1 5.14 4.8 4.56 3.69 6.12
Bra035186 (CYCA2;4)
0.9 0.61 1.44 1.14 1.46 0.98 0.86 0.67 0.75 0.78 0.62 0.44 0.5 0.85 0.74 0.72 0.98 0.99 0.3 0.5 0.41 0.88 0.15 0.18 0.07 0.12 0.03 0.04 0.06 0.04 0.11
Bra036903 (SUV3)
4.27 3.9 3.8 3.49 4.86 4.73 4.5 5.47 3.64 3.57 3.5 3.92 5.09 5.37 5.78 4.82 5.12 4.05 3.21 4.81 4.34 3.89 2.96 1.28 1.04 1.27 1.09 1.44 1.34 1.03 0.97
Bra037089 (MMZ3)
18.1 11.88 16.71 10.52 9.85 10.11 9.97 7.94 17.67 12.58 13.8 11.9 13.46 18.77 20.29 11.38 9.27 12.76 12.69 13.06 13.14 14.5 3.67 3.85 3.22 2.69 3.55 4.33 4.87 4.54 3.82
Bra038294 (APAP1)
14.92 15.59 14.41 15.2 14.75 12.63 12.32 15.46 13.02 15.18 13.05 17.13 14.6 15.45 21.71 12.53 13.66 14.56 12.36 14.86 15.6 12.35 2.91 4.67 5.04 4.74 3.45 4.68 4.57 5.15 4.47
Bra039767 (ORP1C)
1.5 1.49 1.85 1.19 2.6 2.63 1.2 1.02 1.39 1.36 1.55 0.98 1.25 3.09 1.61 1.68 1.61 0.99 1.36 1.56 1.46 1.74 0.15 0.04 0.14 0.09 0.19 0.15 0.11 0.13 0.2
Bra039877 (VSR6)
0.76 0.18 0.42 0.25 1.35 1.08 0.81 0.64 0.94 1.15 1.1 0.88 1.01 1.09 1.53 0.79 1.15 0.84 0.73 1.09 0.59 1.26 0.25 0.4 0.19 0.37 0.2 0.24 0.43 0.37 0.59
2.49 7.0 6.64 5.22 4.39 1.52 1.76 2.23 4.2 4.87 4.7 3.35 7.19 4.69 3.12 5.02 5.51 9.76 3.22 3.39 2.24 5.76 0.0 0.5 0.0 0.0 0.33 0.23 0.1 0.0 0.0

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)