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Heatmap: Cluster_77 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - - - - - - - - - - - - - - - - - - - - - - 3.27 3.24 1.31 1.21 - 1.19 2.27
Bra000979 (IND)
 - - - - - - - - - - - - - - - - - - - - - - - 2.89 - 4.56 - - - - -
-0.84 -2.68 -1.58 -1.21 1.35 -0.31 -1.81 -3.44 -0.27 -3.82 -1.58 -1.46 -0.32 0.82 -0.95 -5.25 -1.94 -0.6 -1.04 -3.39 -2.44 -2.53 - -0.87 -0.13 0.67 -2.33 2.1 3.01 1.45 -0.16
- - - - - - - - - - - - 4.02 - - - - - - - - - - - - 3.89 - - - - -
Bra002108 (WOX12)
 - - - - - - - - - - - - - - - - - 1.94 - - - - 2.74 - - 4.04 - 2.03 - - -
Bra002191 (NSH3)
 -1.06 -1.25 -1.84 -0.96 -0.21 -0.6 -0.24 -1.37 -0.9 -0.48 -0.63 -0.78 0.42 -0.2 -0.16 0.79 0.25 0.96 -0.68 -0.54 -0.47 -0.87 -0.4 0.77 0.72 1.14 0.46 1.52 0.67 -0.22 -0.95
Bra002265 (RbcX2)
 1.74 -1.88 -1.48 - 1.55 -1.87 -1.68 0.17 -0.78 -3.84 -0.09 -1.03 - - -1.62 -2.69 -2.68 - -4.1 -3.78 - - - -1.31 -0.32 0.52 -1.53 2.42 2.77 1.66 0.32
- - - - 0.61 0.6 - 0.9 - - - - - - - - - - - - - - - 1.56 - - - 1.89 4.13 - 0.92
- - - - - - - - - - - - - - - - - - - - - - - - - 4.32 - - 3.47 - -
Bra003707 (IGMT5)
 - -6.08 -2.93 - - -1.06 -0.17 0.84 0.28 0.5 -0.36 -0.29 -0.12 -0.71 0.29 0.27 -1.3 1.83 0.27 -0.29 -0.63 0.15 0.73 0.52 0.04 -1.39 0.32 1.08 0.89 0.36 -0.39
Bra005096 (GFS1)
 -0.96 -0.81 -1.51 -1.89 0.04 0.52 -0.89 -1.44 -0.55 -0.08 -0.0 -1.55 0.27 -0.56 -1.23 0.33 -1.14 0.17 0.61 -0.37 -0.02 -0.46 1.1 -0.01 0.35 0.4 0.81 1.29 0.97 -0.16 0.02
Bra005311 (GTE2)
 -0.04 - 2.94 0.77 -0.47 -0.44 -0.7 - - 0.58 1.2 -0.06 -0.24 - - -0.19 - - - -0.35 - - 0.55 - -0.46 -0.47 -0.27 1.34 -0.33 - 2.08
Bra005394 (FAH1)
 -1.83 0.23 -0.85 -1.15 -1.48 -0.14 -1.68 - -2.3 - -1.14 - - -0.08 -1.34 -0.32 -1.43 -2.04 - - - -0.53 -0.81 1.46 1.11 2.1 1.51 1.79 1.43 1.4 0.54
Bra005703 (PNY)
 -0.51 -0.59 -1.07 -0.99 -0.09 -0.08 -0.33 -0.64 -0.4 0.07 0.18 -0.36 -0.51 0.1 0.1 -0.31 -0.26 0.61 0.07 -0.03 0.06 -0.56 -0.32 0.43 0.71 0.63 0.52 0.79 0.92 -0.48 -0.41
0.82 -1.18 -0.62 -0.44 -0.02 -0.51 0.09 -0.39 -0.47 -0.19 -0.81 -1.0 -1.45 -1.2 -1.94 0.08 -1.09 -0.88 -1.41 -0.36 -0.56 -1.24 -3.82 0.27 0.38 2.0 0.58 2.11 0.74 0.47 -1.45
Bra005907 (HAT14)
 -4.76 -3.31 -2.22 -3.73 -2.37 -0.91 -2.81 -0.98 0.07 -1.15 -2.13 -1.59 -1.47 -1.9 0.0 -0.14 -1.79 0.05 -1.66 -1.25 -0.08 -2.19 -0.39 1.8 1.89 0.86 1.53 0.69 1.32 0.95 1.42
Bra006576 (SAUR70)
 -3.93 -1.81 -2.99 -3.28 -3.21 -0.54 -1.05 -0.81 -1.96 -5.21 -2.19 -1.62 -1.57 - -3.31 -1.65 -1.91 -2.49 -1.18 -0.25 -0.45 -2.94 -1.35 2.24 2.25 0.74 1.41 1.99 2.14 0.39 -0.96
- - - - - 0.1 - - - - - - 1.28 - 0.4 0.38 - 2.98 - - - - 1.15 - 2.4 2.44 0.73 - 0.33 0.19 -
- - - - - - - - - 1.87 - - - - - - - - - - - - - - - 4.77 - - - - -
Bra007886 (NRT1.7)
 -1.82 -3.11 -4.17 -3.38 -1.15 -1.12 -1.14 -1.8 -0.93 -0.85 -0.99 -0.91 -1.72 -1.47 -1.32 -0.74 -1.45 0.2 -0.87 -1.16 -0.61 -1.27 0.61 1.81 1.65 1.33 1.31 2.21 1.0 -0.14 -0.47
Bra008271 (OPR2)
 0.44 0.1 -0.74 -0.05 0.34 -0.2 -0.66 -0.12 -0.88 -0.97 -1.15 -1.18 -1.0 -0.23 -0.4 -0.68 -1.3 0.52 -0.42 -0.91 -0.75 -0.88 1.05 0.09 -0.0 1.14 -0.19 1.24 1.32 0.58 -0.35
-4.11 -2.71 -1.97 -3.15 -1.51 -0.8 0.06 0.02 -0.68 -1.35 -0.42 -1.12 1.09 0.17 -0.71 -0.8 -0.95 1.24 -0.38 -0.32 -1.02 -0.27 0.95 0.98 0.7 0.45 0.31 1.83 1.31 -1.09 -1.43
Bra008782 (ROXY2)
 - - 2.07 1.67 - - - 1.06 - - - - 1.26 0.77 0.64 - - - - - 0.37 - 1.01 - - 3.4 0.99 - - - -
Bra009171 (DPA4)
 -3.26 -5.6 -5.66 -2.73 0.62 1.24 -0.77 0.31 0.1 0.33 -1.68 -0.15 -0.34 0.37 0.45 -1.28 -0.01 2.08 0.89 -1.94 -0.45 -0.43 1.27 -0.33 -0.93 -2.49 -1.05 1.5 0.44 -3.01 -4.22
Bra009855 (PP2-B7)
 - - - - -2.1 -0.19 - - - - - - - - - -1.98 - -2.27 - - - - 1.85 1.09 0.39 2.72 1.43 2.86 0.9 0.77 1.19
-1.83 -1.68 -0.93 -1.71 -1.57 -1.73 -1.26 -1.2 -3.02 -2.52 -2.48 -4.06 -0.89 -2.2 -0.53 -0.98 -1.74 -0.1 -1.43 -4.44 -1.72 -1.4 0.74 1.63 1.66 1.21 1.35 1.46 1.58 1.35 1.13
Bra010334 (TZF3)
 -0.44 -1.38 0.6 -4.38 2.15 -1.61 -3.66 -4.54 -3.43 -1.79 -2.75 -1.73 -3.21 -0.23 0.07 -4.15 - -1.48 -0.55 -2.77 -3.5 - -1.05 1.09 0.48 1.32 0.84 1.86 1.69 1.38 0.6
Bra010560 (RL3)
 0.13 -1.94 -3.0 -0.46 0.53 -0.81 -1.12 -1.82 -0.68 -2.19 -2.34 -2.44 -0.27 -2.41 -3.63 -1.33 -2.06 1.88 -0.27 -2.04 -1.49 -2.26 -0.85 1.02 1.04 1.16 0.5 2.14 2.04 -0.64 -1.58
- - - - - - - - - - - 0.75 2.39 0.71 - 0.56 - 1.01 - - 1.01 - 0.97 - - 2.2 - 0.6 1.9 1.52 1.17
- - - - - - - - - - - - - - - - - - - - - - 2.21 2.0 3.17 3.53 -0.03 - - -0.16 -
-0.89 -1.95 -1.6 -1.39 -1.01 -0.7 -0.04 -1.49 -1.01 -0.91 -0.42 -0.25 -2.49 -0.97 -0.45 -0.56 -1.96 -0.5 -0.85 -0.63 -0.59 -0.66 0.42 1.5 1.72 1.45 1.45 1.54 1.15 -0.59 -2.6
- - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - -
Bra014181 (RGLG4)
 -1.29 -0.73 -0.23 0.48 -0.28 -0.72 -1.87 -17.5 -15.08 -19.94 -17.65 -12.65 -13.71 -1.65 0.16 -23.71 -21.46 -2.04 -16.17 -2.64 -0.54 -17.93 0.64 1.96 1.76 1.34 1.43 1.8 1.42 1.04 0.31
Bra015592 (APK1)
 -0.19 -0.34 0.24 0.44 -0.4 -0.18 -0.14 -0.15 -0.47 -0.58 -0.57 -1.09 -0.81 -0.36 -1.19 -0.02 -0.34 -0.28 -0.26 -0.1 0.0 -0.38 -0.18 0.33 0.4 0.97 0.51 1.04 0.67 0.28 0.24
-1.52 -1.17 0.15 -1.57 -2.31 -3.44 0.54 0.04 -1.22 -0.68 0.25 -1.06 0.13 -1.38 -0.92 0.12 -0.44 0.9 0.23 -0.18 -0.93 -0.9 0.9 0.87 1.24 0.64 1.15 0.88 0.21 -0.38 -0.29
Bra017572 (SUT1)
 -2.65 -3.57 - - -0.99 -2.04 - -2.51 -1.85 -3.03 -1.39 -2.63 -2.81 -0.74 -3.56 -2.83 - - - -1.63 -2.97 -4.16 1.13 1.42 1.4 2.89 0.81 2.99 1.16 -0.91 -
- - - - - - - -3.56 -5.91 - - - - - - - - - - - - - -1.3 2.53 2.23 3.03 1.88 2.36 0.51 -1.66 0.34
Bra019969 (AAP8)
 - - - - 2.78 - - - 1.81 - 1.77 - - - - - - - - - - - - - - 3.73 - - 1.97 - -
- - -0.26 -0.16 0.47 0.07 -0.79 -1.54 -0.1 - - - 0.24 - - -1.24 - 0.93 1.91 0.14 - - 0.83 - - 3.61 - -0.35 -1.42 0.53 -
Bra020550 (PHE1)
 - - - -0.93 - - -1.42 -1.09 - - -1.45 -0.97 -1.19 0.88 - -0.09 -1.29 0.91 1.45 0.7 1.14 2.27 - 0.54 1.5 2.85 -1.37 - - - -
Bra021299 (TED4)
 -4.54 - - - - - -4.02 -3.19 - - - - -3.39 - -1.03 - - -2.86 - -4.48 -4.56 - -4.47 2.56 2.13 2.12 1.8 1.7 1.86 0.62 1.78
Bra021779 (HDG3)
 - - - - - - - - - 0.23 - - - - - 0.38 - - - - - - 1.8 - - 3.63 1.76 0.44 1.41 0.31 1.99
Bra022306 (GPAT9)
 - - - - - - - - - - - - - - - - - - - - - - - - - 4.04 - - - 3.86 -
- - - - -4.09 - -5.42 - -4.34 -2.17 -2.82 - -3.97 -5.06 -4.87 -3.34 -3.48 - - - -4.11 - -2.58 2.58 2.34 1.76 2.27 2.57 1.59 0.32 -0.86
-0.2 -0.14 -0.17 0.66 0.72 -0.25 -0.87 -0.08 -0.12 -0.15 -0.55 -0.02 -0.58 0.03 0.14 -0.29 -0.33 -1.22 -0.55 -0.64 -0.96 -0.63 -0.68 0.3 0.4 0.48 0.38 0.72 0.57 0.82 0.25
-0.17 -0.02 0.1 0.58 0.69 -0.26 -1.09 -0.21 0.27 -0.2 -0.18 0.01 -0.79 -0.2 0.08 -0.34 -0.51 -0.86 -0.69 -0.53 -1.14 -0.37 -0.68 0.21 0.39 0.31 0.55 0.6 0.62 0.79 0.18
Bra024125 (SCS2B)
 -0.34 -0.05 0.02 -0.18 0.79 0.12 -0.6 -0.02 -0.09 0.03 -0.52 -0.32 -0.4 0.35 0.37 -0.44 -0.47 -0.36 -0.28 -0.0 -0.66 -0.54 -0.08 -0.12 0.22 -0.0 0.18 0.62 0.5 0.36 0.39
- -1.43 - -0.29 -1.71 - - - - - -0.18 - - - - - - - - - - - 2.7 0.68 1.33 2.72 0.2 1.76 2.04 -1.68 1.3
-1.08 0.55 0.08 1.53 -0.47 - 0.02 - -1.56 -0.39 -1.39 - -0.23 - - - - - - -0.33 - -0.56 -0.38 -1.51 - 1.96 -1.44 1.45 -1.33 2.96 1.72
Bra024472 (SBA3)
 -1.53 -1.95 -2.07 -1.99 0.89 -0.02 -0.98 -3.15 -1.53 -2.63 -2.55 -2.17 -0.96 0.08 -1.67 -0.41 -1.94 -0.08 -0.83 -1.15 -1.76 -2.25 0.01 1.44 1.35 1.33 1.0 1.91 1.87 -0.08 0.02
Bra024509 (PLL3)
 -0.88 -0.27 -0.74 0.34 -1.53 -3.1 -2.21 -2.27 -2.71 -0.83 -3.06 -7.15 - -5.85 -5.71 -5.32 -4.21 -4.85 -1.01 -3.77 0.26 -4.08 -3.93 1.32 1.59 1.45 1.36 2.08 2.38 0.99 0.83
Bra024921 (PRD3)
 0.01 -0.43 -0.15 -0.75 0.48 0.14 -0.14 -0.37 -0.1 -0.38 -0.38 -0.14 -0.37 -0.06 0.04 -0.16 -0.3 0.03 -0.03 -0.56 -0.42 -0.47 -0.12 0.47 0.3 0.1 0.14 0.99 0.82 0.22 -0.05
Bra026494 (CXE18)
 -0.42 -0.81 -0.74 0.49 0.38 -1.54 -0.26 0.36 -1.74 -0.73 -1.48 -1.14 0.22 -1.68 -1.56 -0.28 -0.48 -0.97 -1.78 -0.45 -0.71 -0.32 0.22 0.46 0.35 1.81 0.78 1.02 0.56 0.87 0.61
Bra026599 (SAUR21)
 - -1.31 1.01 0.22 -4.35 -3.02 -1.13 -0.6 -0.98 -1.05 -0.13 0.66 -1.09 -1.69 -1.25 -0.64 -1.24 -2.32 -0.97 0.3 -0.71 0.38 -2.09 0.29 0.38 1.3 0.4 0.54 1.0 1.97 1.39
Bra026812 (HB32)
 -1.06 -1.28 -0.68 -0.37 0.01 -0.42 0.22 -0.42 -0.58 -0.22 -0.52 -0.88 0.61 -0.19 0.35 0.35 0.45 0.84 -0.07 0.02 0.04 -0.49 -0.02 0.3 0.19 0.55 0.29 0.55 0.38 -0.2 -0.39
Bra027993 (RLK)
 - - - - - - - - - - - - - - - - 1.63 1.9 - - - - 2.36 - 0.72 3.34 - 2.12 1.56 - -
-0.62 0.03 -0.81 -0.66 0.68 0.78 -1.25 -2.12 -0.15 -0.41 -1.12 -1.89 -0.97 -0.76 0.48 -1.35 -1.05 0.54 -0.85 -0.14 -1.52 -1.27 0.57 0.5 0.16 1.15 0.32 0.96 1.19 0.55 0.63
Bra028841 (SAUR44)
 1.63 - 3.4 - 1.6 - - - - - - - - - - - - - - - - - - - - 3.84 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - -
Bra029155 (AGL72)
 -3.54 -1.9 - -3.55 -0.25 -0.93 -2.13 - -0.14 -0.1 -0.61 -4.0 -2.08 -0.11 -1.28 0.16 -1.83 -2.98 0.16 -0.26 -1.38 -0.88 1.55 0.6 0.73 2.45 1.15 1.68 0.98 -0.32 -0.59
- - - - -3.68 0.9 -2.97 -3.84 - -1.91 - -1.58 -3.61 -1.47 -0.84 -3.52 -0.72 -1.0 -1.96 -3.75 -3.77 -2.94 0.72 0.75 1.65 2.78 0.98 2.19 1.61 0.75 -0.08
Bra029766 (PLL3)
 0.5 -0.01 1.17 0.56 -1.52 - -3.06 -4.0 -1.31 -2.39 -4.1 - -2.22 - - -0.96 - -1.42 -2.22 -2.92 -0.2 - -4.0 0.83 0.93 1.55 1.08 2.22 2.05 0.66 1.13
Bra029916 (PORA)
 - - - - - - - - -1.44 -1.62 0.1 - -1.38 - - - 0.52 1.02 -1.39 - - - 2.11 1.87 2.0 1.05 1.63 2.01 1.19 0.63 -
- -3.57 - - - - -4.1 - - - - - -2.26 - - -2.2 - -1.77 -3.86 - -2.03 -4.09 -1.0 2.32 2.19 1.62 1.48 2.29 2.18 1.04 1.23
- - - - - -2.69 - - - - -1.23 - - - - - - -2.39 - - - - 0.86 2.79 1.45 1.89 1.39 2.93 1.29 0.49 -0.08
Bra032159 (MES6)
 1.83 - - - - - - - - - - - - - - - 2.7 - - - - - - - 1.58 3.91 - - - 1.52 -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - -
Bra033297 (NAC049)
 - - - - -4.54 - - - - - - - - - - - - -5.26 - - - - 1.29 2.24 1.9 1.85 1.8 2.7 2.04 0.45 0.0
Bra033674 (KLK)
 -2.09 - - -4.73 -4.79 -3.78 -4.83 - -4.65 -3.24 -2.35 -1.41 -3.6 -1.26 0.29 -2.9 -0.06 - -1.35 -2.11 -0.01 -0.73 -1.27 2.28 1.97 0.59 1.48 0.82 1.9 0.83 2.03
Bra034609 (UGT73B3)
 -0.03 -0.05 -0.85 -0.73 0.28 0.48 -0.42 -0.1 -0.2 -0.77 -0.4 -0.28 -0.56 0.12 0.1 -0.22 -0.36 0.09 0.1 -0.02 0.14 -0.32 0.83 -0.01 0.1 0.4 -0.3 0.54 0.8 0.13 -0.28
- - - - 2.11 - - - - - - - - - - - - - - - - - - 1.01 - 4.62 - - - - -
Bra034956 (TT3)
 - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - -
- - - - - - 0.03 0.65 -0.41 - 0.12 - -0.49 -0.25 0.14 - 0.87 0.88 0.33 0.52 -1.75 -3.38 0.1 -2.22 -0.18 0.9 1.01 2.35 2.03 -0.26 0.14
Bra035444 (AGP6)
 - - - - - - - - - 2.59 - - - - - - - 1.62 - - - - 1.66 1.66 - 3.64 - - - 1.63 -
Bra035506 (IDL6)
 - - - - - - - - - - - - - - - - - - - - - - 2.6 - - 4.64 - - - - -
Bra036131 (GIF)
 -0.38 -2.08 -3.98 -1.36 -0.07 0.42 -0.69 -0.43 -1.26 -1.36 -0.54 -1.63 0.87 -1.32 -2.6 -1.39 -0.7 1.23 -0.42 0.06 0.44 -0.29 -0.14 0.26 0.79 0.59 0.78 1.86 1.13 -0.32 -0.55
-3.63 - - - -3.78 -1.27 - -2.67 -2.3 - - -2.08 -3.46 - -0.88 -3.49 -3.07 -2.21 - -2.31 -4.11 -4.82 1.42 1.85 1.86 0.26 1.41 2.62 2.57 0.51 0.3
- - - - - - - - - - - - - - - - - - - - - - - - - 4.13 - 3.75 - - -
Bra037064 (PDS5C)
 -1.44 -2.74 -1.29 -3.7 -1.64 -0.81 -0.98 0.05 -1.51 -0.19 -0.14 -1.97 0.44 -0.44 -0.68 -0.38 -1.02 1.03 -0.9 -0.23 -1.46 -1.28 1.13 0.87 1.15 0.94 0.84 1.59 0.6 -0.13 0.67
Bra037537 (IPT8)
 - - - - 1.74 - - 1.64 - - - - - - - - - - 0.69 - - 0.7 - 1.63 - 3.79 - 2.12 - - -
-2.31 - - - -2.58 - -2.89 - - -1.14 - - -2.55 - - - -2.7 - -1.98 -1.66 -0.86 - - 1.63 1.16 1.14 -0.73 3.55 3.01 - -0.57
Bra038428 (VHA-A2)
 - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.34 - - - - 3.43
Bra039203 (SDT)
 - - 3.24 -0.8 - - -0.35 -0.88 - - 0.94 - - - 1.26 0.15 - - - 1.35 - - -0.96 - 0.51 2.11 - 0.08 -1.01 0.9 1.03
Bra039395 (MYB5)
 - - - - 3.61 - - - 1.76 - - - - - - - - - - - - - - - - 3.95 - - - - -
Bra039823 (TGG1)
 -4.85 -4.93 -4.52 -5.76 -4.05 -5.3 -2.06 -4.75 -0.88 -0.87 0.4 -1.77 -1.51 -3.11 -2.89 0.55 -1.26 1.39 -0.13 -4.07 -3.45 -1.97 1.7 1.66 1.53 1.37 0.88 2.22 0.91 -0.0 -2.7
Bra039824 (TGG1)
 -4.85 -4.93 -4.52 -5.76 -4.05 -5.3 -2.06 -4.75 -0.88 -0.87 0.4 -1.77 -1.51 -3.11 -2.89 0.55 -1.26 1.39 -0.13 -4.07 -3.45 -1.97 1.7 1.66 1.53 1.37 0.88 2.22 0.91 -0.0 -2.7

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.