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Heatmap: Cluster_205 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.89 -0.4 -0.54 -0.62 0.27 0.31 -0.32 -0.41 -0.82 -0.62 -0.56 -0.45 -0.38 0.28 0.4 -0.08 -0.12 0.05 -0.27 -0.25 -0.39 -0.33 0.64 0.47 0.45 0.81 0.33 0.29 0.48 0.34 0.15
Bra004587 (AtTIM21L-1)
 -0.27 -0.31 -0.44 -0.78 0.04 -0.07 -0.11 -0.0 -0.21 -0.07 -0.29 -0.43 0.17 0.03 0.21 0.01 -0.06 0.23 -0.03 -0.32 -0.28 -0.0 0.89 0.33 0.14 0.07 0.23 0.42 0.04 -0.04 -0.08
Bra004602 (UBAC2B)
 -0.1 0.48 0.21 0.44 0.47 0.52 -0.39 -0.36 -0.25 -0.2 -0.51 -0.48 -0.31 -0.01 -0.1 -0.44 -0.26 1.38 0.6 -0.87 -0.29 -0.19 0.87 -0.3 -0.62 -0.42 -0.33 -0.53 -0.2 -0.39 -0.25
Bra004613 (SSL2)
 - - -1.47 - -3.07 -3.23 - -0.97 -0.41 - -1.82 - 0.1 0.8 -1.01 -0.97 -3.18 - -3.31 -2.16 - -0.21 0.49 1.67 2.36 0.01 1.83 0.76 1.87 1.53 0.28
-0.69 -0.64 -0.31 -0.04 -0.44 -1.57 -0.86 -0.56 -0.46 -0.5 -0.36 -0.37 1.71 -0.9 -1.34 -0.15 -0.34 1.3 -1.47 -0.82 -1.29 -1.37 1.46 -0.14 0.01 1.61 -0.2 -0.68 -0.64 0.3 0.6
Bra005713 (EXP9)
 -3.78 -3.13 -3.03 - -0.44 -0.37 -0.7 -1.4 -0.65 -0.89 0.03 -0.92 0.51 -0.18 -0.48 -0.33 -0.64 1.06 0.71 -0.76 -0.71 -2.09 0.49 1.58 1.09 0.61 1.1 0.93 0.85 -0.37 0.19
-2.61 -2.15 -1.81 -2.43 -1.02 -0.06 -2.93 -1.7 -1.21 -2.2 -2.5 -2.32 -1.31 -2.21 0.43 -0.98 -2.02 1.1 -1.76 -2.4 -0.49 -2.54 1.8 0.96 1.13 0.89 0.96 1.39 1.24 1.16 1.25
- - - - - - - - - - - - - - -2.42 - -3.55 -1.73 - - -0.5 -1.26 1.12 2.18 2.44 1.54 1.72 1.83 0.05 2.04 1.18
Bra006425 (PSRP6)
 -0.93 -0.57 -0.6 -0.23 -0.66 -0.59 -0.22 -0.19 -1.05 -0.3 -0.35 -0.31 0.07 -0.72 -1.14 -0.14 -0.15 -0.57 -0.53 -0.17 -0.09 -0.1 0.74 0.82 0.86 0.72 0.92 0.49 0.07 0.46 0.77
Bra007085 (TRP3)
 -0.51 -0.31 0.09 -0.36 -0.18 0.1 -0.02 -0.13 -0.86 -0.43 -0.77 -0.68 -0.27 -0.1 -0.18 -0.19 -0.32 -0.17 -0.38 -0.45 -0.47 -0.54 0.42 1.07 0.96 0.66 0.74 0.38 0.38 -0.06 -0.03
Bra008132 (SOT16)
 -2.19 -1.13 0.69 -1.73 -0.29 0.5 0.06 -0.28 -1.48 -0.53 -1.83 -1.23 -0.7 0.28 0.13 0.36 -0.23 1.5 0.14 -0.37 -0.54 -0.26 1.26 0.72 0.47 0.2 0.32 -0.24 0.13 -0.01 -0.98
Bra009026 (AIL6)
 -0.94 -3.27 -0.16 -1.02 -0.21 -1.67 -0.72 -0.77 -2.5 -0.98 -1.18 -1.82 1.36 -0.7 -0.54 -0.42 -1.93 1.04 - -4.63 -2.3 -3.82 2.02 1.04 1.21 0.58 0.22 0.24 0.58 0.93 1.19
Bra009051 (SAV4)
 -0.59 -0.34 -0.39 0.01 0.04 -0.75 -0.74 -0.57 -0.73 -0.67 -0.64 -0.7 1.05 0.28 0.04 -0.27 -0.48 0.89 -0.66 -0.61 -0.66 -1.0 1.06 0.15 0.41 0.93 0.06 0.02 0.12 0.5 0.33
Bra009606 (SMR4)
 -1.22 -0.17 -0.24 0.45 0.51 0.42 -0.21 -0.49 -0.89 0.3 -0.92 -0.78 1.01 1.0 -0.07 -0.27 0.0 0.38 -0.85 -1.06 -0.18 -0.27 0.65 -0.25 -0.51 1.18 -0.34 -0.33 0.15 -0.67 -0.51
Bra011119 (SES1)
 -1.94 -3.53 -6.44 -6.73 -2.14 -2.52 -2.52 -0.37 -2.72 -2.64 -1.72 -2.33 -0.43 -0.71 -1.04 -1.7 0.37 0.64 -0.09 -1.54 -0.51 -0.7 1.92 0.87 0.99 1.39 1.05 0.83 1.1 1.02 1.39
-2.73 -3.03 -2.19 -0.97 0.13 -0.46 -1.0 -0.57 -1.4 -1.97 -1.93 -2.37 2.82 0.71 -0.02 -0.1 -1.65 1.48 -2.39 -1.75 -1.51 -2.29 1.45 -1.31 -0.4 2.28 -0.82 -0.93 -1.07 -1.48 -1.09
Bra011228 (HHP2)
 -1.05 -0.84 1.1 -1.96 -0.67 -0.18 -0.71 -0.83 -0.04 -0.11 -0.28 -0.12 0.45 0.17 0.34 0.47 -0.21 1.29 0.44 -0.24 -0.03 -0.05 -0.27 0.87 0.49 -0.13 0.05 -1.01 -0.48 -0.36 -0.7
Bra011502 (ATM4)
 - - - - - - - - - - - - - - - - - - - -1.4 - - 1.34 2.44 2.58 0.83 2.39 0.64 2.37 1.36 -1.37
-2.9 -2.09 -1.92 -1.72 -0.06 0.15 -0.27 -0.73 -1.28 -0.12 -1.14 -1.29 -0.37 -0.2 0.39 -0.61 -0.29 -0.16 0.11 -0.56 -0.59 -1.19 1.4 0.7 1.05 0.59 1.12 0.7 0.81 0.23 0.71
Bra012646 (IRP3)
 -0.23 0.01 -0.02 -0.66 -0.03 0.06 -0.9 -0.61 -0.5 -0.44 -0.85 -0.19 -0.23 0.09 0.21 -0.45 -0.37 0.76 -0.25 -0.66 -0.51 -0.29 1.19 0.36 0.03 0.08 0.22 0.49 0.5 0.34 0.33
Bra013670 (TRM11)
 -3.65 -3.38 -7.09 -2.54 -1.08 -1.4 0.28 0.12 -0.57 -0.56 -1.18 -0.5 -0.33 -1.18 -1.24 0.01 -0.19 0.08 -0.8 -0.15 -0.53 -0.59 -1.15 1.76 1.42 0.23 1.27 0.96 1.05 0.78 0.8
- -0.08 -2.55 - -0.2 -0.29 - - -3.81 - -2.92 - - - -1.07 -1.08 - - - - 0.23 - -2.06 2.19 1.89 2.11 2.26 1.89 1.6 -1.49 0.19
Bra014129 (NRX1)
 - - - - - - -0.49 -1.14 -2.17 -0.21 - -1.18 0.39 0.03 1.13 0.0 -1.94 - -1.44 - -1.98 - 2.46 1.47 0.56 0.42 1.25 1.29 0.86 0.64 1.4
Bra014436 (CYSC1)
 -0.81 -1.03 -1.52 -1.75 0.21 0.06 -0.01 -0.29 -0.41 -0.25 -0.3 -0.54 -0.15 0.11 0.3 -0.47 -0.91 -0.11 -0.23 -0.32 -0.42 -0.24 1.04 0.66 0.57 0.43 0.63 0.32 0.33 0.43 0.76
-4.67 - -4.4 -4.39 -2.69 -1.76 -3.19 -2.33 -1.19 -3.06 -3.94 -2.98 0.92 -1.68 -1.42 -1.95 -1.87 1.95 -2.43 -4.02 -2.48 -3.37 2.17 1.49 1.42 -0.24 0.84 0.82 1.7 1.08 1.1
-2.97 -2.23 -1.67 -6.42 0.75 0.98 -1.62 -3.12 -2.83 -0.73 -2.75 -1.6 -1.25 0.61 -0.44 -1.03 -2.53 0.92 -1.53 -1.76 -1.79 -1.25 1.71 1.52 1.02 -0.39 0.45 0.89 1.24 0.69 1.21
Bra015911 (MYB95)
 -6.14 -6.18 - - -0.2 -0.28 -1.37 -2.72 -0.27 -1.28 -0.98 -0.37 0.33 0.58 0.75 -0.81 -0.51 0.27 -0.94 -0.89 -0.62 -0.77 1.97 1.21 1.49 0.36 1.04 0.33 0.55 -0.43 0.23
Bra016532 (DDR4)
 -0.07 -0.46 -0.28 -0.81 -0.34 0.05 -0.64 -0.54 -0.36 -0.59 -0.57 -0.05 -0.82 -0.17 0.4 -0.64 -0.53 0.18 -0.04 -0.51 -0.67 -0.71 0.79 0.64 0.48 -0.15 0.43 0.66 0.74 0.6 0.87
Bra019270 (CRF2)
 -0.98 -0.96 -0.5 -0.26 -0.63 -1.48 -0.63 0.38 -1.62 -2.2 -2.04 -0.65 1.9 -1.39 -0.89 -1.17 -0.55 0.76 -3.03 -2.76 -1.12 -1.79 1.67 0.57 0.56 1.02 0.25 0.5 0.58 0.21 1.1
- - - - - - - - - - - - - - - - - - - - - - 1.73 2.98 2.84 2.29 2.19 0.7 -0.09 - -0.77
Bra020014 (GLP5)
 0.16 0.03 0.44 -0.25 0.41 -0.34 -1.16 -0.73 -0.38 0.12 -0.08 -0.09 -0.76 -0.4 -0.41 -0.2 -0.32 0.75 -0.03 -0.41 -0.57 -0.22 1.29 0.14 -0.1 -0.12 0.07 0.26 0.16 0.55 -0.32
-1.01 -0.78 -0.68 -1.25 -0.12 -0.48 -0.25 -0.33 -0.51 -0.15 -0.41 -0.32 0.35 0.0 -0.28 -0.26 -0.34 0.59 -0.36 -0.48 -0.3 -0.33 1.09 0.67 0.62 0.52 0.66 0.35 0.3 0.18 0.25
-1.03 -0.8 -0.82 -1.05 0.11 -0.21 -0.3 -0.3 -0.54 -0.19 -0.57 -0.24 0.07 0.04 0.32 -0.01 -0.17 0.29 -0.42 -0.1 -0.37 -0.12 1.06 0.48 0.46 0.32 0.43 0.34 0.37 0.03 0.51
Bra023458 (PIP2B)
 -5.33 -4.32 -2.04 -4.26 -3.11 0.05 -0.72 0.06 -1.02 -1.36 -1.34 -0.75 -0.6 -1.28 1.24 -0.3 -0.89 -2.43 -0.71 -2.83 -0.38 -1.09 2.19 1.45 1.25 0.69 0.99 0.89 0.88 -0.13 0.16
Bra023838 (TGG1)
 -3.53 -3.04 -3.2 -4.23 -1.86 -3.47 -2.87 -3.77 -1.12 -0.51 -0.8 -2.8 0.01 -2.94 -3.63 -0.35 -0.93 1.65 -1.51 -1.83 -2.5 -1.91 1.75 1.42 1.26 0.99 0.66 1.3 1.12 1.24 1.27
Bra023933 (FIE)
 -0.83 -0.58 -0.76 -1.06 0.42 0.41 -0.21 0.13 -0.26 -0.25 -0.47 -0.54 0.43 0.3 0.27 -0.12 -0.52 0.36 -0.08 -0.64 -0.38 -0.55 1.21 0.25 -0.08 0.07 0.05 0.41 0.25 0.22 0.1
- - - - - 0.1 - -0.3 -0.75 0.53 0.19 - -0.29 - - -1.02 - - - -0.32 - - 0.54 1.8 1.89 1.29 2.23 0.71 0.81 1.45 0.94
Bra024865 (PDLP6)
 -0.77 -0.79 -0.85 -1.27 0.47 0.81 -1.12 -1.51 -0.25 -0.57 -0.27 -0.69 -0.17 0.5 0.18 0.13 -0.98 -0.05 0.08 -0.22 -0.28 -0.33 1.01 0.81 0.23 0.03 0.02 0.46 0.78 0.14 0.31
Bra025296 (P4H5)
 - - - - -2.47 -1.56 - - - - - - - - - - 0.14 0.24 - - - -0.76 1.71 2.03 1.99 1.39 1.43 1.56 1.02 1.59 1.57
Bra025351 (CYP81D11)
 -4.7 -6.89 -4.73 -5.37 -0.23 -0.82 -2.33 -4.52 -0.85 -1.58 -1.39 -2.33 -0.65 -0.03 -1.29 -0.81 -2.17 1.25 -1.09 -3.06 -2.68 -2.43 1.91 1.53 0.88 0.1 0.26 0.99 1.98 0.54 1.82
-0.43 -3.92 -1.33 -2.12 -1.14 -0.38 0.14 -0.07 -0.95 -0.93 -0.85 -1.47 -0.04 -1.19 -0.35 -0.83 -0.04 -0.86 -1.56 -0.89 -0.38 -0.94 0.55 1.44 1.09 1.03 1.37 0.81 0.81 0.54 0.99
-0.24 0.12 0.53 -1.11 0.49 0.33 -1.12 -2.14 -1.03 -0.32 -0.95 -0.76 -1.28 -0.46 -0.2 -0.15 -0.95 1.67 -0.86 -1.05 -1.2 -0.32 1.49 0.46 0.27 0.25 0.14 0.69 0.25 0.26 -0.26
Bra025983 (PDE1)
 -1.23 -0.73 -0.42 -0.91 0.28 0.74 -0.78 -1.03 -0.42 -0.82 -0.44 -0.81 -0.27 0.19 0.41 -0.05 -0.54 0.39 -0.19 -0.44 -0.3 -0.51 0.87 0.6 0.52 0.35 0.08 0.18 0.57 0.61 0.56
Bra026680 (GSTU25)
 -6.68 -4.01 -4.59 -4.62 -0.32 -1.17 -1.08 -3.75 -3.02 -1.82 - -3.53 -2.47 -0.07 -0.4 -0.05 -0.61 0.95 -1.05 -2.72 -1.03 -2.81 1.57 2.13 1.56 0.97 1.3 0.98 1.47 -0.59 0.79
Bra027161 (PG1)
 -2.62 -1.38 -2.3 -0.49 -0.32 -0.87 -1.18 -0.65 -0.72 -0.64 0.1 -0.71 1.61 0.05 -0.04 -0.19 -0.46 1.55 0.04 -0.96 -0.71 -0.61 1.64 -0.52 -0.12 1.17 -0.71 -0.78 -0.0 0.35 0.42
Bra027555 (AtBBE27)
 -1.83 -1.95 -2.02 -3.78 -0.39 -1.83 -1.03 -0.6 -0.5 -0.45 0.21 -1.21 -0.0 -0.2 -0.21 -0.53 -0.36 -0.43 -0.07 -0.21 0.17 0.04 1.34 0.56 1.25 1.16 0.64 0.89 0.82 0.21 0.05
Bra027788 (APM4)
 - - - - - - -1.79 - -1.68 - - -2.86 0.71 - 0.17 -1.06 -1.73 - -0.95 -5.52 -0.51 - 2.42 1.5 1.14 1.21 0.68 1.58 1.58 1.23 1.5
- - - - - - - - - - - - - - - - - - - - - - 1.02 2.73 2.26 1.87 1.32 1.55 1.66 0.77 1.84
Bra028838 (SAI-LLP1)
 - - - - -4.96 -6.65 - -6.4 -3.65 -2.81 -5.16 -4.95 0.47 -2.89 -3.79 -3.22 -4.24 1.51 -1.95 - -3.39 -3.84 2.04 1.89 1.98 1.56 1.71 1.98 1.18 -0.26 -0.73
-0.97 -0.49 -0.96 0.49 0.85 0.02 0.4 -0.95 -1.29 -0.78 -0.59 -1.67 1.7 -0.49 -0.58 0.07 -0.14 0.99 -0.57 -0.48 -0.75 -1.53 1.31 -0.24 -0.06 0.9 -0.18 -0.28 -0.27 -0.61 -0.0
Bra029231 (DIL1)
 -4.74 -3.97 -4.4 -3.28 -3.49 -1.8 -1.85 -0.54 -0.74 -0.48 -0.67 -1.59 0.69 -1.5 -1.8 0.73 -2.38 -0.71 -1.34 -2.62 -1.41 -1.27 0.83 1.45 1.57 1.57 1.59 1.17 0.26 0.83 1.25
-1.64 -1.87 -0.97 -1.85 -1.09 -1.21 -1.61 -1.4 -1.24 -0.82 -1.1 -1.26 0.8 -1.53 -2.03 -0.34 -0.53 0.51 -1.82 -0.95 -1.47 -0.91 0.73 1.54 1.54 1.12 1.46 0.6 0.92 0.22 1.14
Bra031935 (XYP1)
 -2.66 -3.51 -3.65 -3.14 -1.62 -1.29 -0.86 -1.2 -1.1 -0.69 -0.81 -0.59 0.55 -1.9 -0.9 0.12 -0.2 -0.1 -0.92 -0.68 0.13 -0.5 1.71 1.65 1.46 1.13 1.07 0.51 -0.04 0.14 0.55
-2.18 -2.3 -1.69 -2.01 -0.63 -1.04 -1.35 -2.03 -1.15 -0.45 -1.1 -0.96 -0.73 -3.44 -2.27 -1.09 -1.07 -0.85 -1.18 -1.6 -1.43 -0.94 1.95 1.68 1.88 0.8 1.27 0.47 0.14 1.22 1.22
-0.53 -0.6 -0.1 0.6 0.64 -3.88 -1.15 -2.1 -2.46 -3.29 -1.38 -2.01 1.67 -1.62 -2.97 -0.77 -1.28 1.84 -0.96 -2.44 -2.17 -2.56 1.92 0.13 0.26 1.39 0.42 0.58 -0.67 0.58 0.05
Bra033706 (ADH2)
 -1.12 -1.59 -1.33 -1.6 0.4 0.33 -0.87 -1.1 -0.7 -1.54 -0.75 -0.83 0.47 0.09 0.28 0.05 -0.38 0.39 0.4 -0.76 -0.17 -0.65 0.7 0.95 0.83 0.54 0.77 0.36 0.43 0.1 0.46
-3.0 -4.07 - -1.25 -2.37 -2.12 -2.08 -0.75 - -2.87 -1.72 -0.5 0.27 -0.18 -0.91 -1.02 0.18 -0.59 -2.53 -1.56 -0.32 -4.59 0.12 2.11 1.71 1.09 1.02 1.61 0.81 0.86 1.19
-0.94 -0.36 -0.81 -0.61 -1.48 -0.1 -0.01 0.03 -0.81 -1.05 -0.74 -0.28 1.03 -0.78 -0.22 -0.71 -0.73 0.13 -1.2 -0.46 -0.12 -0.6 1.41 0.88 0.84 0.53 0.62 0.29 0.57 0.08 0.15
Bra035021 (CIB3)
 - -2.24 -0.53 -0.3 -0.76 -2.77 -1.54 -1.19 -1.48 -3.89 - - -0.38 -0.29 -0.47 -3.72 - -2.04 -1.13 -4.37 -2.59 -3.75 1.67 2.04 1.67 2.04 1.34 1.36 1.33 -0.15 -0.21
Bra036546 (RD22)
 - -3.53 - - -4.57 -3.96 - - -2.36 -5.51 - -4.16 -0.97 -3.01 -1.58 - -5.41 2.08 -3.03 -3.13 - -3.95 1.18 2.28 2.29 1.47 2.02 0.36 1.19 -0.17 0.79
Bra037640 (CPN10)
 -0.99 -0.5 -0.45 -0.53 -1.47 -1.44 -0.67 -0.21 -1.64 -0.94 -1.11 -1.13 0.28 -1.7 -1.7 -0.89 -0.74 -0.35 -1.47 -0.67 -0.56 -0.72 1.37 1.17 1.05 1.04 1.12 1.06 0.14 0.41 1.43
-1.09 -1.12 - - -1.71 -0.53 - - -0.75 -0.51 -0.01 -1.45 -2.46 -1.48 -2.42 -2.61 - -1.12 - - 0.1 -1.61 1.01 2.4 2.32 1.2 1.47 0.48 0.78 0.47 0.87
Bra038582 (TRM13)
 - - - - - - -2.33 - - -2.24 -1.44 - -1.07 - - -1.01 - 0.66 -2.11 -0.18 - - 0.08 2.67 2.29 1.46 1.12 1.01 1.83 0.64 1.14
-0.66 0.11 0.06 -0.23 0.19 -0.27 -0.57 -1.04 -0.85 -0.31 -0.74 -0.38 -0.23 0.05 -0.76 -0.02 0.0 1.11 -0.09 -1.18 -0.71 -0.7 1.43 0.42 0.25 0.08 0.46 0.05 0.08 0.38 0.33
- - - -2.81 -6.22 -3.98 - - - - -3.13 - -3.52 -3.86 -0.03 - - -6.36 - - -4.66 - 0.98 2.3 2.42 2.29 2.47 0.9 0.76 0.74 0.65
Bra039038 (ZHD9)
 -0.8 -0.4 -0.04 0.34 0.61 -0.92 -2.08 -0.74 -0.59 -0.45 -0.73 -1.22 1.09 0.71 -0.59 -0.81 0.24 0.74 -0.91 -0.46 0.07 -1.23 1.21 -0.02 -0.28 1.2 0.0 0.16 -0.01 0.2 -0.24
Bra040213 (GAPC)
 -0.34 0.82 -0.26 -1.21 1.3 0.36 -1.24 -1.79 -1.37 -0.42 -1.48 -1.26 -0.97 -0.11 0.47 0.05 -0.19 1.9 -0.72 -1.27 -1.21 -0.14 1.97 -0.55 -0.89 -1.24 -0.62 -0.21 -0.67 0.35 0.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.