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Heatmap: Cluster_229 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000330 (GT)
 -0.48 -0.55 -0.33 -1.12 0.09 -0.24 -1.43 -0.95 -0.56 -1.03 -1.06 -1.05 -0.32 0.96 0.31 -1.12 -1.12 3.31 -0.07 -1.72 -1.4 -1.08 1.49 -1.58 -1.8 -1.22 -1.26 -1.72 -1.05 -0.97 -0.14
Bra001197 (ATG8H)
 -1.38 -1.16 -1.2 -1.44 0.38 -1.47 -0.99 -2.82 -0.52 -0.54 -0.66 -0.31 -0.93 0.12 -0.53 -1.07 -0.59 2.95 1.88 -0.98 -1.85 -0.89 1.64 -0.91 -0.64 -1.41 -1.15 -0.27 -0.24 -0.26 -1.14
-0.6 0.05 0.07 -0.33 -0.22 -0.27 -0.41 0.52 -0.86 -0.75 -1.19 -1.0 0.47 0.19 0.38 0.02 0.1 2.16 -0.08 -0.96 -0.89 -0.63 1.73 -0.78 -0.4 -0.62 -0.68 -0.58 -0.95 -0.69 -0.41
- 0.45 1.7 - - - - - - 0.23 -2.68 -1.15 - - - 0.07 -1.75 3.45 -1.01 - - 0.28 3.22 -2.53 -3.51 - -1.18 -3.18 -1.76 -3.35 -3.34
- - - - - - - 0.3 - 2.04 - - - - - - - 2.69 - - - - 4.26 - - - - - - - -
Bra002402 (SIED1)
 -1.17 0.12 -2.86 -3.86 -3.63 -1.69 -4.98 -0.83 -2.02 -1.7 -1.25 -1.97 0.13 -1.02 -0.6 -1.07 -3.55 3.64 0.57 -0.61 -2.5 0.12 2.91 - -2.87 -2.18 - - -3.0 -3.0 -2.34
Bra002499 (LecRK-I.7)
 -0.42 -0.78 -0.16 -0.85 0.41 0.03 -2.6 -2.21 -1.16 -2.11 -1.17 -1.63 -1.67 -0.49 -0.61 -1.25 -1.66 2.94 -0.5 -1.13 -1.2 -0.97 2.24 0.07 -0.64 -0.16 -0.3 -0.17 -0.69 0.2 0.09
Bra002538 (EXO70H7)
 -0.86 -0.76 -1.48 - 0.24 0.12 0.17 -0.1 - 1.06 -0.16 -0.09 2.33 -0.04 -2.16 -0.03 -0.2 1.53 -2.89 1.12 - 0.09 1.15 -0.76 -0.22 -1.71 -2.67 -1.5 -1.56 -0.68 0.58
Bra002989 (AtDOB12)
 - - 0.63 - - -1.68 - - - - 0.54 -1.79 - 1.24 0.92 -0.49 -1.56 3.72 -0.17 - - - 2.6 - -0.11 - - - -0.48 - -1.54
Bra003511 (UXS2)
 -1.43 -1.76 -1.71 -2.32 0.57 -0.16 -2.4 -3.43 -2.16 -0.77 -2.28 -1.9 -1.47 1.03 0.51 -0.98 -0.71 3.67 0.41 -2.26 -1.45 -1.04 1.97 -1.95 -2.76 -1.68 -2.4 -1.99 -1.75 -2.26 -2.26
0.16 0.23 -0.01 -1.29 0.25 -0.09 -1.27 -0.74 -0.93 -0.63 -1.21 -0.6 0.09 -0.07 -0.2 -0.74 0.42 2.08 0.33 -1.06 -0.3 -1.19 1.86 -0.2 -0.53 0.22 -0.51 -0.24 -0.38 -0.6 -0.92
Bra005225 (ROT4)
 - - - - - - - - - - - - 2.67 - - - - 3.89 - - - - 3.29 - - - - - - - -
-0.76 -0.32 -2.91 -0.46 -0.47 0.11 -2.46 -0.6 -1.91 -1.1 -1.71 -1.27 0.56 -0.07 0.81 -0.61 0.29 2.93 -0.06 -0.69 -1.36 -0.41 1.69 -0.26 -0.94 -1.27 -1.07 -1.5 -1.9 -1.15 0.77
-0.02 0.25 0.02 0.03 0.4 0.28 -0.42 -0.15 -0.51 -0.39 -0.3 -0.51 0.09 0.02 0.03 0.07 0.12 1.41 0.32 -0.32 -0.16 -0.21 1.02 -0.44 -0.34 -0.4 -0.2 -0.55 -0.54 -0.66 -0.44
-0.45 -0.82 -0.43 -0.19 -0.16 -0.09 -1.11 -0.36 -0.52 -0.07 -0.53 -0.45 0.76 0.36 0.46 0.03 -0.35 1.97 -0.0 -0.34 -0.82 -0.24 1.03 -0.32 -0.5 -0.29 -0.03 -0.39 -0.16 -0.39 -0.23
-2.06 0.07 0.27 -0.99 -0.9 -1.28 -2.31 -2.22 -2.18 -1.72 -2.77 -1.55 -1.4 -2.06 -0.6 -1.34 -1.41 2.86 0.74 -1.76 -2.61 -2.41 2.78 -1.23 -2.11 0.7 -2.51 -0.64 -0.48 1.44 -0.81
Bra008098 (ISD11)
 -2.44 - - -1.63 -0.55 0.48 0.49 0.05 0.73 0.36 -1.1 -0.48 2.05 1.01 1.21 1.32 1.28 2.4 -2.7 -0.39 0.11 - -0.8 - -1.3 - - - -2.45 - -
Bra008204 (STH2)
 -0.93 -0.97 -0.7 -1.94 -1.8 -1.0 -3.63 -1.03 -0.4 -0.95 -1.99 -0.8 -0.86 -0.0 0.08 -0.75 -0.07 2.8 -0.28 -0.06 0.32 -0.78 2.36 -2.53 -2.05 -2.31 -2.05 -1.87 -1.19 0.11 1.65
Bra009383 (OM64)
 -0.51 0.03 -0.57 -1.06 0.08 0.67 -1.25 -0.56 -1.44 -1.03 -1.38 -1.71 -0.37 0.11 1.32 0.33 -0.25 2.7 0.33 -0.62 -0.67 -0.56 1.92 -1.59 -2.03 -1.67 -1.37 -2.06 -2.12 -1.91 -0.25
-1.04 0.41 0.36 -0.06 -0.2 0.08 -0.45 0.39 -0.28 -0.87 -1.11 -1.04 0.65 0.38 0.48 -0.19 -0.62 2.31 0.42 -1.09 -1.69 -2.01 2.34 -0.88 -2.86 -1.46 -1.43 -3.21 -2.22 -2.04 -1.1
- - - - - - - - 0.27 - - - 3.4 - - - - 3.73 - - - - 2.26 - - - - - - - 0.2
- - - - - - - - - - - - 3.61 - 2.82 - - 3.36 - - - - 0.6 - - - - - - - -
Bra012655 (CBL1)
 -2.95 -2.2 -1.28 -1.89 0.34 0.2 -0.8 -0.55 -0.77 -0.66 -1.18 -0.71 -0.63 0.44 0.33 -0.6 -0.68 3.05 0.76 -0.71 -0.71 -1.01 1.64 -0.57 -0.64 -0.97 -1.38 -0.66 -0.32 -0.68 -1.36
-0.9 -1.01 -0.55 -0.51 0.14 -0.34 -0.68 -1.08 -0.4 -0.4 -0.51 -0.31 -0.07 0.28 -0.48 -0.29 -0.59 2.43 0.25 -0.33 -0.84 -0.58 1.68 -0.41 -0.05 -0.72 -0.24 -0.05 -0.38 -0.59 -0.3
Bra013177 (GRP9)
 - - - - - - - - - - - - 3.52 - - - - 3.51 0.41 - - - 2.76 - - - - - - - -
Bra013524 (CRK29)
 -2.52 0.39 -0.43 -0.85 -0.21 0.35 -0.77 -0.34 -0.96 0.15 -0.72 -0.99 -0.46 -0.01 -1.24 -0.59 -0.37 2.79 0.26 0.33 -0.21 -1.04 2.33 -1.65 -0.11 -1.82 -2.42 -1.09 -3.39 -1.39 -
Bra013749 (CSLG3)
 - - - - 0.77 -0.29 - - - -0.37 - -0.29 - - - - - 2.95 - - - - 4.11 - - - - - - - 0.9
Bra014340 (FBA3)
 -0.07 -0.32 -0.24 -0.52 0.51 -0.12 -0.17 -0.57 -0.58 -0.34 -0.5 -0.54 0.17 0.29 0.6 -0.15 -0.27 1.47 0.29 -0.39 -0.25 -0.37 1.04 0.09 0.07 -0.06 0.03 -0.27 -0.65 -0.45 -0.64
Bra015379 (PFA-DSP1)
 -0.11 0.05 0.5 0.8 -1.67 -1.88 -1.05 -0.79 -2.29 -1.04 -1.05 -1.4 0.11 -2.26 -1.16 -0.58 -0.66 3.28 1.1 -1.09 -0.85 -0.79 1.56 -0.39 -0.91 -2.03 -1.61 -1.55 -1.9 -1.3 -1.4
- - - - - - - - - - - - 3.22 - - - - 4.14 0.8 - - - - - - - - - - - 1.21
Bra016389 (TGA3)
 -1.63 -1.58 -1.43 -2.87 0.43 -0.23 -2.94 -2.58 -2.56 -2.05 -2.86 -2.02 -4.9 -0.39 0.03 -1.86 -3.12 3.68 1.35 -1.58 -2.63 -1.41 2.55 -2.1 -2.2 -2.99 -2.74 -0.85 -0.65 -2.1 -3.88
- -0.92 - - -1.27 -1.97 -0.97 -0.21 0.39 -1.54 -1.27 -1.18 1.2 - -3.33 0.75 -0.45 2.67 -2.5 -1.45 -2.56 - 2.53 0.63 0.14 -1.0 0.53 0.97 -1.76 -0.13 -1.06
Bra017093 (ATPT2)
 -3.4 -0.63 -0.68 -4.32 1.04 0.33 -2.73 -4.02 -1.41 0.06 -2.48 -1.42 -2.97 -0.15 0.35 -0.59 -1.05 3.29 0.74 -1.41 -2.24 -0.43 2.66 -4.21 -4.53 -3.75 -3.53 -3.36 -2.79 -0.47 -1.83
Bra017637 (EDA9)
 -5.6 -4.68 -2.81 -4.16 -3.35 -1.78 -2.06 -2.23 -3.08 0.07 -2.7 -1.57 -0.03 -3.4 -2.34 -1.26 -1.28 3.64 -0.24 -2.32 -1.92 -1.05 2.8 0.3 0.21 -0.38 -0.56 -1.36 -2.13 -2.33 -2.06
Bra017797 (MES9)
 - - - - -1.99 -2.62 - - -2.52 -0.7 -1.72 -1.58 2.13 - - -1.06 -0.5 3.17 - - -2.57 -0.71 3.73 - - - - -0.87 - - -
Bra017911 (emb2170)
 -2.48 -2.11 -3.65 -2.74 -0.63 -0.63 -1.55 -2.5 -1.24 -1.35 -1.83 -1.68 -0.88 -0.31 -0.08 -1.97 -1.45 3.63 1.51 -0.9 -3.54 -1.36 2.4 -1.18 -2.46 -1.37 -1.84 -1.53 -1.55 -1.71 -1.24
Bra019417 (ALX8)
 - - - - - - - - 0.02 - -2.07 - 0.02 -1.47 -0.02 - - 3.91 0.53 - - - 2.9 - 0.22 - - - 0.51 -1.95 -0.79
-0.14 -0.14 -0.27 -0.14 0.18 -0.03 -0.09 -0.18 -0.4 -0.21 -0.4 -0.39 0.12 0.04 0.25 -0.1 -0.23 1.23 0.37 -0.11 -0.1 0.15 0.9 0.11 -0.12 -0.2 -0.04 -0.28 -0.47 -0.56 -0.45
Bra019973 (RAS1)
 - 0.12 -0.47 -1.67 -0.42 -0.75 -1.56 - -0.1 -0.04 -0.63 -1.32 0.15 1.13 1.18 -0.02 0.11 2.79 0.35 - -0.69 -1.56 1.44 -1.14 -3.08 -2.69 -1.98 -1.26 0.15 -0.41 0.58
Bra020180 (SIED1)
 -0.66 0.1 -0.75 -1.02 0.62 -0.77 -1.06 -0.05 0.22 -0.64 -0.55 0.25 -1.7 -0.17 -0.79 -1.43 -0.93 2.39 0.54 0.09 0.23 0.01 2.46 -1.41 -2.36 -3.41 -2.09 -1.79 -0.29 -0.98 -1.66
- - - - - 0.34 - - - - - - 3.39 - - - - 2.91 - - - 0.41 0.47 - - 2.69 1.38 - - - -
Bra021542 (GGL18)
 -1.13 -0.96 -1.07 -2.0 0.08 -1.05 -0.52 -0.62 -0.69 -0.29 -0.23 -1.12 0.9 0.61 0.51 -0.03 -0.2 2.17 0.32 -0.8 -0.47 -0.66 1.15 -0.59 -0.56 -0.17 -0.82 -0.32 -0.01 0.17 0.46
Bra023621 (PC1)
 - - - - 0.21 - -0.2 - - - - - 3.32 - - - - 1.79 1.17 1.93 1.29 - 1.24 - - 1.8 - - 0.28 - -
- 0.45 1.7 - - - - - - 0.23 -2.68 -1.15 - - - 0.07 -1.75 3.45 -1.01 - - 0.28 3.22 -2.53 -3.51 - -1.18 -3.18 -1.76 -3.35 -3.34
Bra023798 (ELIP)
 -5.97 -6.19 -6.93 -4.37 -0.82 0.62 0.31 -0.24 -3.28 -2.75 -3.41 -3.24 0.94 0.6 0.9 -1.16 -0.32 3.17 -0.05 -0.72 -0.68 -2.79 2.41 -0.76 -1.08 -2.07 -1.62 -0.03 -1.85 -3.62 -3.13
Bra023894 (MEK5)
 -2.43 -1.28 -1.21 -1.27 -1.04 -0.06 -0.74 -0.81 0.38 -0.91 -0.8 -1.87 0.36 0.12 0.39 -0.96 -0.15 2.71 0.39 0.66 -0.08 0.48 1.84 -1.67 -0.69 -1.32 -1.12 -1.7 -0.9 -0.44 -1.28
Bra024162 (ADP1)
 0.71 0.93 -0.74 -0.94 -1.21 0.13 -1.84 -1.6 -2.1 -2.12 -0.76 -3.25 0.45 0.0 -1.45 -2.47 -1.09 2.74 -1.61 -0.86 -1.9 -2.2 2.5 -0.56 -1.78 -2.16 -0.15 -1.0 0.12 0.11 0.25
- - - - - - - - - - - - - - - - - 3.67 - - - - 4.19 - - - - - - - -
Bra025483 (LOJ)
 - - - - - - - - - - - - - - - - - 4.21 - - - - 3.64 - - - - - - - -
Bra025641 (MDR8)
 0.26 - - - 1.0 - - - - - - - 1.15 - 1.37 - - 3.02 - - - 0.02 3.79 - - - - - -21.93 - -19.69
-4.31 -4.86 -7.85 - -6.64 -6.78 -7.94 -6.31 - -5.87 - - -3.41 - -7.32 -6.56 -4.55 4.54 1.63 -4.73 -4.78 -6.3 2.08 - - - -7.81 -7.57 -7.57 -7.75 -6.04
-0.71 -0.36 -0.03 -0.76 -0.89 -0.8 -0.58 -0.1 -0.95 -0.29 -0.53 -0.45 0.08 -0.29 -0.24 -0.13 0.03 1.98 1.01 -0.24 -0.66 -0.37 1.66 -0.3 -0.32 0.29 -0.15 -0.71 -0.87 -0.27 -0.31
Bra026509 (EDF3)
 - -1.31 -4.32 -4.73 -1.45 -2.58 -0.04 0.92 -0.27 -0.77 -4.28 -2.38 -2.98 -0.37 0.09 -0.69 -2.07 2.7 -1.16 -0.47 -3.13 - 2.69 0.31 0.27 -1.28 -0.57 -0.17 0.45 0.64 0.07
-1.78 -1.79 -0.76 -2.21 -1.22 -1.63 -1.13 -1.09 -0.79 -0.23 -0.94 -0.99 0.15 -0.61 -0.73 -0.46 -0.39 2.85 0.97 -0.81 -1.2 -1.11 2.21 -0.68 -0.33 -0.37 -0.46 -1.02 -0.97 -0.08 0.61
- -2.61 -2.72 - -3.9 -4.03 -3.15 -0.25 -1.82 -0.52 -1.59 -0.63 0.48 -0.62 -0.38 -0.75 0.32 2.89 -1.29 -0.88 -1.61 -0.72 2.58 0.13 -0.03 -1.12 -0.48 -0.33 -0.99 0.86 0.44
Bra028182 (CYP735A1)
 - - - - - - - - - - - - 3.38 - - - - 3.86 - - - - - - - - 2.59 - - - -
- - - - - - - 0.12 - - - - 2.02 - - 0.37 - 3.41 - - - - 3.8 - - - - - - - -
Bra029789 (CCR1)
 -1.17 0.03 -0.27 -2.76 -0.79 -0.61 -2.74 -1.97 -2.7 -0.02 -1.93 -1.7 1.41 -2.48 -0.32 0.32 0.79 2.3 -0.4 -0.26 -0.68 -0.56 2.9 -1.29 -1.39 -1.57 -2.13 -0.97 -1.21 -0.51 -1.7
Bra031435 (FBS1)
 -2.4 -0.99 -1.55 -2.31 -3.71 -0.87 0.32 -1.12 -1.45 -0.36 -1.78 -1.76 2.09 -0.23 -0.02 -0.29 -0.97 2.62 -0.85 -2.57 -0.91 -3.79 1.96 -1.72 1.06 0.39 -0.3 -3.47 - 0.28 0.17
-0.63 -0.3 -0.43 -0.12 -0.66 -0.32 -0.27 0.01 -0.97 -0.6 -0.87 -0.77 0.38 -0.5 0.03 0.53 0.39 1.18 0.87 -0.16 0.02 -0.23 1.57 -0.11 -0.0 -0.14 -0.01 -0.58 -0.82 -0.65 0.0
Bra031827 (FMO1)
 - - - - - - - - - - - - 3.41 - - - - 3.01 - - - - - - - - - - 1.35 2.26 2.33
-0.62 -0.54 -1.1 -1.77 -0.55 -0.26 -0.3 0.8 -2.01 -0.96 -1.55 -2.02 0.23 -0.04 0.7 0.15 -0.21 2.12 1.21 -0.35 -0.77 -1.25 2.54 -1.29 -1.37 -1.64 -1.41 -1.91 -1.63 -1.5 0.04
Bra032437 (ADS1.2)
 1.36 - 0.29 - -0.81 - -2.13 -0.35 - 0.15 - -0.4 2.64 - 0.33 -1.6 - 3.11 - -1.83 -1.83 -0.36 -0.84 -0.02 -0.9 - -0.31 -0.64 - -0.78 0.89
Bra032706 (TKL1)
 - - -0.06 - 1.6 - 1.85 - - -0.13 - - 0.12 - 0.14 - 0.06 1.87 - 0.03 - -0.21 3.78 - - - - - - - -
-0.7 -0.73 -0.95 -1.29 -1.01 -1.87 -1.72 -0.76 -5.14 -1.52 -0.7 -2.32 1.22 -1.82 -2.62 -2.21 -1.09 3.53 -3.57 -1.58 -2.99 -2.19 2.3 -2.7 -0.83 -0.79 -1.04 0.53 -2.38 -0.07 -0.18
Bra034725 (SAUR72)
 -0.0 0.6 -0.22 -1.91 -0.38 -0.07 -0.7 -0.26 -1.89 -1.42 -1.79 -1.83 -0.9 -0.81 -0.44 -1.8 -1.08 2.52 0.24 -1.33 -1.03 -1.12 2.68 -0.93 -1.08 -3.06 -0.52 -1.35 -0.35 0.19 0.64
Bra035688 (PRS)
 - - - - - - - - - - - - 3.68 - - - - 3.4 - - - - 2.93 - - - - - - - -
Bra036838 (SRS1)
 - - - - -0.38 0.15 0.82 -1.42 - - - - 3.04 -0.17 -1.19 - - 2.85 -1.63 -0.35 0.1 -1.38 1.22 - -1.42 - -1.41 - -1.18 -1.35 1.91
- - - - - -0.55 -4.68 -5.66 -3.35 -3.27 -1.87 - -2.99 0.7 2.08 -1.29 -1.99 2.89 - -3.45 -3.45 -2.38 3.81 -1.52 -1.8 -4.14 -3.76 - -3.35 -3.39 -1.36
0.28 0.31 0.21 -0.54 0.49 0.12 -0.16 -0.12 -0.99 -1.16 -0.74 -1.04 0.72 0.67 0.78 0.19 -0.73 1.46 -0.92 -0.57 -0.4 -0.56 2.05 -0.41 -1.06 -1.4 -0.95 -1.19 -1.31 -1.11 -0.52
- - - - - - - - - 0.44 - - 2.91 - - - -0.46 2.51 -0.47 - - - - 1.51 - 1.07 - - 0.51 2.67 1.14
Bra038880 (SRS1)
 -1.55 - - - 0.47 -0.23 -0.58 0.37 -1.06 -3.61 -0.83 -1.17 2.47 -0.29 1.21 -1.71 -1.04 2.16 -0.84 -0.01 -3.5 - 1.73 0.76 - 0.15 -1.24 -0.96 -0.79 -0.61 0.0
Bra039165 (RGP1)
 -1.74 -1.03 -2.06 -2.3 0.78 -0.6 -0.57 -0.07 -0.89 -0.35 -0.35 -0.92 1.3 0.27 0.48 0.24 -0.3 2.61 -0.33 -0.84 -0.59 -0.23 1.98 -0.88 -1.02 -1.13 -1.01 -1.64 -2.08 -1.83 -1.66
Bra039816 (PRX32)
 -1.22 -1.56 -1.14 -1.02 0.22 -0.43 -0.33 -0.7 0.34 -0.3 -0.21 -0.11 -0.2 0.13 0.21 -0.45 -0.07 2.3 0.76 -0.46 -0.87 0.1 1.88 -0.82 -0.75 -1.14 -1.09 -0.79 -0.89 -0.57 -0.37
Bra039829 (AGP9)
 -3.35 -0.78 -0.58 0.05 -1.12 -1.42 -1.29 -1.08 -1.52 -0.8 -0.45 -0.67 1.46 -0.63 -0.76 -0.01 -0.46 2.39 -0.76 -1.69 -0.49 -0.54 2.01 0.05 0.24 0.98 0.19 -1.32 -1.11 -1.32 -0.48
Bra040999 (RLK4)
 -4.55 -4.24 -3.82 -3.31 -1.68 0.0 -0.22 -1.75 -0.83 -0.41 -0.53 -0.36 0.01 -1.6 -1.57 -0.23 0.4 3.25 0.72 -0.28 -0.4 -0.01 1.85 -1.2 -0.72 -0.91 -0.59 -2.07 -0.88 -0.99 -0.36

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.