Heatmap: Cluster_316 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra005375 (ATL38)
- - - 0.61 0.25 -1.46 - -0.16 -0.53 - - - -1.25 2.24 1.26 -0.14 - 2.71 0.51 1.49 -1.36 - 2.65 - - - - - - - -1.22
Bra010184 (TRN1)
- - - - - - - - 1.03 - 0.83 - - 2.26 1.39 - 0.99 - 0.7 - - - 3.55 - - - - 1.27 - 1.0 -
Bra012641 (SUB)
- - - - - - 0.69 - - - - - - 3.27 - 1.13 - - 2.45 - - - 3.6 - - - - - - - -
Bra036886 (AR2)
- - - - 0.56 1.6 0.34 0.85 - 0.53 - 0.97 1.76 1.93 0.8 0.78 - 0.53 - - - - 2.98 - - - - - - - -
Bra038171 (PCO3)
- - - - - - - - - - - - - 3.27 2.4 - 1.99 - - - - - 3.6 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.