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Heatmap: Cluster_97 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000146 (UPL1)
 - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
- - - - 1.11 - - - - - 0.52 1.1 1.61 - -0.35 2.04 0.5 1.38 - 1.11 - 0.3 0.5 - 1.69 1.15 - - 0.63 -0.46 -0.35
-1.0 - -4.56 - -1.83 0.81 -2.24 -0.32 0.45 0.74 0.15 0.53 -1.66 0.78 -0.62 0.72 0.16 0.01 1.35 0.98 -0.61 0.36 -3.1 0.27 -0.16 0.4 -0.22 0.67 0.17 -0.2 -0.12
-2.0 - - - - 0.67 -2.48 -0.35 0.83 -0.8 -0.12 0.75 0.04 0.36 -1.44 -0.52 -3.25 0.85 1.04 1.55 0.41 1.51 - -1.03 0.31 -0.54 -1.21 1.03 1.62 -2.3 -0.64
- - - - - 1.3 1.1 - - - 3.74 - - - - - - 2.29 - 3.03 - - - - - - - - - - -
Bra003741 (bZIP63)
 - - 1.41 - -0.2 -1.15 - -1.3 - -1.15 2.43 - 0.05 1.75 - 0.6 -1.11 -1.24 - - - -1.16 2.02 0.74 - 0.67 - 0.74 0.55 -0.98 1.36
-0.84 0.77 - -0.77 0.91 -0.05 - - -0.94 1.34 - - - 1.27 -0.72 2.34 0.71 1.51 -0.87 -0.94 0.57 -0.14 0.01 - -0.98 - - -0.89 1.66 0.03 -
-1.01 -1.46 -1.81 -2.97 -0.06 0.53 -0.11 0.01 0.11 -1.1 2.13 0.46 1.04 0.03 -0.01 -1.59 0.01 0.81 -0.6 0.54 0.53 -0.05 -0.25 0.14 0.39 - 0.58 -1.2 -1.6 -1.71 -0.84
Bra005511 (SDG3)
 - - - - 1.17 0.14 - 0.46 - - 2.85 - 0.4 - - - - - - - - - 1.21 - - 1.76 - 2.81 1.34 1.3 -
- - - - - -24.28 - - - - - 2.02 - - 0.7 - 2.93 - - 2.34 - 0.31 -0.56 - - - -1.76 2.03 2.65 - -
Bra007014 (IBI1)
 - - - - 2.1 - -0.44 - - - 3.05 - 1.51 - - - - 1.96 1.65 - - - 1.38 0.72 -0.31 - - - 0.84 - -0.07
Bra007966 (KCS7)
 - - - - 1.02 - - - 1.47 0.83 - - 2.38 1.18 - 2.64 2.06 - - - 0.75 2.29 - - - - - - - - -
Bra007990 (MATE45)
 0.26 0.38 -3.5 -2.91 -0.21 -0.21 -1.22 -2.38 -1.49 0.31 1.44 0.66 -2.19 1.38 1.38 -0.55 -1.2 1.02 0.24 0.26 -0.76 -0.18 -1.71 0.01 -3.33 -3.4 -0.2 0.21 1.3 0.22 -1.08
- -1.75 0.09 - 0.74 0.94 -0.75 -0.38 0.68 -0.22 1.81 0.87 -1.06 1.24 0.2 0.36 0.23 1.29 0.59 -0.57 -2.16 0.59 -1.23 - -1.91 -1.25 0.84 - - -0.53 -1.03
1.97 1.77 1.21 0.92 - 1.73 -4.93 -5.3 -5.33 -4.45 1.48 -0.31 0.07 -2.9 1.21 -3.04 -5.13 -0.45 1.39 -0.01 -5.28 1.8 -1.02 -5.31 -3.03 -6.73 -5.2 -6.38 -4.55 -4.32 -3.18
- - - - - - 3.52 - - - 3.84 - 2.38 - - - - - - - - - - - - - - - - - -
Bra008965 (SZE2)
 - - -0.82 -0.36 - -0.8 - - 0.1 - -0.94 -0.85 1.51 1.17 - 2.08 1.34 1.64 - - - 2.12 1.31 - - - - - 0.41 0.3 1.38
- - - - - - - - - - 4.2 - - - - - 3.66 - - - - - - - - - - - - - -
Bra009755 (AtFDB2)
 - - - -0.19 - - -0.29 - - - - -0.2 -0.03 1.95 1.6 - 2.75 0.72 -0.45 1.83 - 1.71 - -0.31 - - - - - - 1.93
- 1.65 0.19 0.64 -0.2 -0.15 1.47 0.34 - -1.26 2.16 1.22 0.09 - -0.58 -0.81 - -0.88 0.87 1.3 - 1.44 -1.02 - -0.06 - -1.11 - - -1.26 -
- - - - - - 3.86 - - - 4.04 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - 2.86 - 0.44 - - 2.3 - -0.37 - 0.75 - - 1.08 0.72 2.26 - -1.31 - - 0.46 2.22
- - - - - - - - - - 2.69 - - - - - - - - - - - - 0.65 0.54 - 1.8 1.86 2.96 1.06 2.18
-1.53 -4.18 -0.51 -0.74 0.16 -1.41 0.53 1.03 -0.45 -0.48 -0.84 -0.53 0.43 1.34 0.48 0.26 -0.37 0.3 -0.38 -0.58 -1.08 -0.7 0.16 0.29 -0.24 0.32 -1.11 0.46 -0.2 -0.11 1.34
Bra014059 (LIP2p2)
 - - -3.8 -3.24 -2.97 0.39 -0.27 -3.14 -0.04 1.55 0.54 0.05 -1.26 1.99 - 1.06 -0.03 -1.99 -0.46 0.18 -0.04 -0.59 -0.99 1.59 -0.56 0.78 0.46 -0.88 0.33 -0.89 0.3
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
- - - -0.74 -0.76 - - - 2.13 0.78 2.33 -0.68 1.48 1.62 1.23 - - 0.22 - - - - 0.91 1.52 - -0.35 - - - 1.32 -0.56
-1.54 - -2.03 - -1.7 - - -2.01 - -0.94 1.88 0.29 -0.66 0.62 0.83 -0.61 0.23 1.32 0.61 -0.79 1.96 1.04 1.87 -0.94 -1.81 -1.88 - -1.53 -1.74 0.6 0.29
- 0.54 2.26 -1.42 1.2 0.72 -0.99 -0.85 -0.25 0.48 2.12 1.14 - -1.52 1.61 - 0.53 - -0.87 -0.77 -1.8 - 0.95 -0.35 - -1.48 - - -0.64 -0.75 -
-0.0 - - - -0.37 -0.32 - - - - - -0.31 - 2.47 -0.04 1.44 2.44 - - 0.71 -0.28 1.84 1.33 - - - - - -0.09 1.35 -0.15
Bra019019 (SINAT4)
 0.2 - 0.08 - 2.14 -0.01 0.18 - -1.86 -0.47 0.07 -0.83 -1.72 2.04 - 0.93 0.63 -1.9 -1.03 0.84 - 1.2 -1.71 - 1.04 -1.49 0.84 -0.81 -0.35 -2.0 -0.31
- - - - - - - - - 0.27 3.29 - 3.16 - - - 1.89 - 0.38 - - - - 1.86 - - - 0.41 - 0.16 -
- - - - - 0.71 -0.37 - - - - - - - - 1.03 - - - 0.8 - 1.99 2.6 - 2.48 2.22 0.82 0.86 - - -0.06
Bra020992 (MYB98)
 - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
Bra021195 (TL2)
 - - - - 2.13 0.58 - 2.44 - 1.2 1.64 - - - - 1.42 -0.3 1.52 1.83 - 1.22 1.03 - - - - - - - - -
Bra021438 (UXS4)
 - - - - - - - - - - 3.47 - 2.37 - - - - - - - - 3.88 - - - - - - - - -
Bra021762 (CYS2)
 - - -0.2 - 1.08 - -0.3 - - - - - 0.32 2.34 0.49 0.29 - 1.09 1.73 - - 2.2 1.08 - -0.04 - - - - -0.07 2.07
Bra021867 (MLO5)
 - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
Bra023638 (WOX12)
 - - - - - - - - - - 3.75 - - - - - - - - - 3.15 3.12 - - - - - - - - -
Bra023941 (COBL10)
 2.03 - - - - - 1.47 - - 1.61 - - - 1.78 - 2.89 - 0.91 - - - -5.23 - 2.26 - - - - 1.82 - -
- - - - - - 0.67 -0.65 0.92 2.59 0.88 0.6 -3.38 2.6 - 1.39 -0.84 -1.19 1.12 0.44 0.12 1.41 -1.06 - - - - - - - -
- - - - - - 1.03 - 0.99 - 3.17 - - - - - - - - - 2.19 - 2.24 2.66 - - - - - 1.25 -
Bra025427 (BR6OX)
 0.17 -2.34 -1.53 -1.51 -2.6 -1.35 0.49 1.27 0.81 0.16 0.02 -0.25 0.74 1.71 1.02 -0.11 0.39 -0.73 -0.37 -1.3 -0.52 0.21 -3.36 0.43 -0.78 -1.11 -1.23 -0.65 0.33 -0.06 0.34
Bra025877 (WRKY27)
 -1.93 -1.77 -1.6 -1.4 -2.27 2.12 -0.21 -0.17 -2.47 -0.07 1.06 -3.02 -1.64 -1.6 -0.43 0.31 -0.31 -2.58 -0.92 -0.52 -0.76 -2.41 -3.45 0.73 0.71 1.4 0.33 2.11 1.07 -0.78 -2.12
Bra026625 (MAP65-6)
 -0.11 -2.29 - - -0.19 0.22 0.18 -0.43 1.26 0.67 1.23 -0.21 0.76 1.37 0.37 -1.51 -1.64 -1.85 1.54 0.74 -2.73 -0.06 -0.44 - -1.79 -1.21 -1.79 -0.14 1.26 -1.64 0.23
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
Bra026965 (EXP7)
 - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
Bra027079 (TPS14)
 -3.58 - -3.27 - -2.95 -0.21 -7.55 -0.26 -0.17 0.65 0.55 0.86 -0.76 0.94 -0.87 -0.52 1.3 -1.2 0.72 0.82 -0.13 1.26 -3.96 0.36 0.04 -1.29 0.31 -0.09 1.02 0.85 0.09
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
Bra027146 (DRS1)
 - - - - - - - 0.44 - - 2.64 - - 2.9 - 0.76 - - - - - - - - - 2.55 1.74 - - 0.68 1.81
Bra027766 (SRP3)
 - -1.17 - 0.17 -0.31 -1.01 0.28 0.74 0.68 1.46 -0.19 - -1.45 1.58 1.64 0.64 1.74 0.82 -1.68 0.91 -1.62 - -2.61 - - - 1.2 - -0.37 -1.49 -0.42
Bra028131 (SBA3)
 - - - - - - - - - - 4.33 - 3.44 - - - - - - - - - - - - - - - - - -
- - - 1.16 - - 0.66 - 0.74 - 2.3 - 1.13 2.24 - - - 1.43 - 1.01 - - 1.5 - - - - 0.13 0.05 2.0 -
Bra029538 (MOM)
 - - - - - - - - - - 4.05 - - - - - - - - - 2.87 2.83 - - - - - - - - -
Bra030261 (PLAT2)
 - - 0.22 - - - 1.9 - - 0.47 3.08 - 0.68 - - 3.72 0.54 - - - - - - - - - - - - - -
Bra030444 (DABB1)
 - - - - - - 1.61 - - 1.88 3.5 - - - - - - - 2.65 - - 2.75 - - - - - - - - -
Bra030445 (SMR9)
 0.39 - -1.51 - -0.44 -1.4 0.54 -2.6 -0.83 0.61 1.2 -1.02 -0.09 2.1 0.3 0.2 0.53 0.4 - 0.06 0.84 -2.26 0.7 -1.37 -0.46 - 0.03 -1.26 0.43 0.99 -0.31
Bra030811 (SOG1)
 - - - - 2.43 - - 1.76 - - 3.41 - - 1.73 1.53 - 0.11 - - 1.1 - 1.09 - - - - - - - - -
Bra030978 (MINI3)
 - - - - - - - - - - 4.95 - - - - - - - - - -10.11 - - - - - - - - - -
- - - - - -0.54 1.77 2.65 0.32 0.47 2.1 0.46 1.24 2.09 -0.36 -0.3 - - - - -0.51 - - - - 1.0 -0.58 - - - -0.4
- - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - -
Bra033100 (HA3)
 - -1.56 - - - -0.07 -1.54 -2.42 -0.63 - -0.45 - 0.14 1.1 0.04 - 1.44 -2.21 0.59 1.02 - 0.23 -0.19 -0.31 -2.13 -0.18 -0.01 -0.92 2.2 1.62 1.97
- - - - 1.84 - -0.59 - 1.48 2.15 2.4 -0.38 - 0.69 - - 1.26 - 2.31 - -0.38 0.44 -0.35 - - - - - 0.68 - -
- - - -1.03 - - - -0.74 - - 2.28 - - 2.41 - - 2.84 - - - - 3.62 - - - - -1.8 - - - -
Bra035085 (HTA6)
 -2.64 -0.66 0.34 -0.88 0.62 -0.01 -1.17 -0.58 -0.63 0.55 0.56 -0.93 1.42 0.91 0.65 0.02 0.12 0.19 -0.38 0.05 -0.21 1.65 -1.5 -1.0 -0.42 -1.89 -1.65 -0.9 -0.74 -0.67 0.62
Bra035106 (MC6)
 - - - - -1.23 - - - - - 0.46 - -1.04 1.09 1.67 0.65 -1.14 1.55 - 1.23 - - - 1.9 1.11 - 0.79 0.61 1.82 0.92 0.65
- - - - 1.81 - - - - - 3.7 2.7 - - 2.13 - 1.85 - - - - - - - - - - - - - -
- - - - 1.25 - - 1.42 1.0 - 2.81 - 2.92 - 1.47 - - - 2.09 - - - - - - - - - - 1.23 -
Bra038250 (PININ)
 -4.31 1.65 1.07 -2.08 1.58 3.14 -4.32 - -3.79 -4.27 2.84 - - -2.19 2.43 -3.1 -3.71 - -5.36 -5.29 -3.82 -3.97 -1.81 -4.47 - - - - - - -
Bra038319 (UPL1)
 - - - - - - - - - - 3.05 - - 2.45 - - - - - - 3.11 - - - 2.08 - - - 2.12 - -
- -1.61 -1.68 -1.54 0.12 - -2.15 -2.13 -1.13 -0.4 1.39 -0.04 1.16 - -1.81 -1.74 -0.92 - 1.51 0.66 -2.11 0.51 2.13 -1.0 1.47 0.73 -0.37 0.56 -0.79 - 1.07
Bra038777 (SBT3.12)
 - - - - - - - - - - 3.56 - - - - 2.75 - 2.73 - - 2.53 - - - - - - - - - -
Bra039605 (NRPB4)
 - - - - - - - -0.65 - - -0.71 1.47 - 0.61 0.79 - 0.67 -0.51 - 1.69 -0.45 - 1.64 - 2.75 - - -0.35 0.51 0.4 2.04
Bra040342 (UNE15)
 - - - - - 2.43 1.7 1.62 - - - - - - - - 2.06 - - - 1.97 2.41 2.01 - - - - - 0.92 - -
Bra040459 (SNF7.1)
 - - - - - 2.87 - - - - 3.92 - - - - - - 3.1 - - - - - - - - - - - - -
Bra040566 (HY3)
 - - - - 1.34 1.25 - - - - 3.43 - - - - 1.46 1.31 - - - - 1.31 - - - - - 2.93 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.