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Heatmap: Cluster_360 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra011384 (CCD8)
 - - - -2.33 -3.59 -2.82 -3.02 -1.75 0.42 0.2 1.12 0.25 0.67 1.94 1.64 0.66 0.65 -2.67 1.12 0.54 0.39 0.27 2.37 -2.75 -3.72 -1.2 -1.42 - - - -3.56
Bra015693 (ADH)
 -2.97 -3.74 -3.58 -3.41 -1.41 -0.51 0.53 -0.12 -0.3 0.13 0.18 -0.27 0.97 1.82 1.23 1.18 0.42 1.06 1.41 0.33 -0.15 -0.74 1.18 -1.44 -1.1 -1.29 -1.79 -2.93 -2.66 -3.27 -2.77
-3.1 -3.41 - -4.39 -1.02 0.82 -0.05 -0.96 1.26 0.17 -0.19 -0.35 0.77 1.56 1.21 0.45 -0.06 0.73 0.61 0.39 0.11 0.68 2.09 -2.72 -1.32 -3.0 -2.58 -3.23 -3.6 -5.73 -4.66

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.