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Heatmap: Cluster_413 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra006687 (ADF3)
 0.38 0.52 0.42 0.28 0.78 0.49 -0.28 -0.2 -0.26 -0.06 -0.18 -0.27 -0.21 0.52 0.41 -0.23 -0.03 -0.24 -0.08 -0.05 0.08 -0.05 0.14 -0.33 -0.64 -0.19 -0.19 -0.8 -0.34 -0.55 -0.31
Bra008364 (RECA2)
 -0.93 1.62 1.44 0.87 2.16 1.97 0.21 - -2.29 -0.7 -1.81 -0.09 -2.47 1.7 1.53 -0.79 -0.17 -2.08 - -3.62 0.38 -4.59 -0.05 - -2.95 -4.38 -1.64 -3.37 -2.94 -3.16 -4.81
0.97 1.06 0.59 0.37 1.28 1.84 0.5 - -0.76 -3.4 -0.11 -0.4 -0.86 0.99 0.99 - 0.47 -2.5 -0.79 -1.04 1.52 -1.44 0.91 - - - -1.28 -0.5 -2.28 -0.57 -3.37
Bra031454 (RECA2)
 -0.06 1.24 0.66 0.58 1.95 1.37 0.02 -3.56 -2.58 -0.08 -0.7 -1.49 -0.96 0.49 1.6 -0.68 -0.47 0.14 -2.01 -3.6 0.56 -1.43 0.78 -1.86 -0.32 -1.6 0.11 -0.54 -1.52 -2.97 -4.58

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.