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Heatmap: Cluster_456 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra010440 (ICK6)
 0.9 1.03 1.09 -0.4 1.2 1.11 -3.42 -3.09 - - - - - - 0.89 - - -0.69 -2.09 - - - 1.86 -1.0 1.37 0.32 1.33 -0.14 0.23 1.34 0.8
Bra012876 (PLP3a)
 0.26 0.53 -0.13 -0.31 0.53 0.38 -0.04 -0.61 -0.77 -0.46 -0.57 -0.88 -0.05 0.35 0.07 -0.36 -0.61 -0.03 -0.53 -0.37 -0.13 -0.52 0.69 0.21 0.28 -0.05 0.24 0.46 0.24 -0.02 0.34
Bra022647 (GALT7)
 0.62 0.5 -0.04 -0.12 0.37 0.21 -0.75 -0.72 -0.2 -0.26 -0.28 -0.42 -0.43 0.06 -0.01 -0.43 -0.31 0.19 -0.2 -0.63 -0.32 -1.01 0.37 0.5 0.32 -0.18 -0.05 0.39 0.23 0.36 0.45

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.