1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_250 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001233 (PBL26)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0
12.59 9.31 8.2 6.37 28.48 22.89 17.03 19.51 29.02 19.76 16.62 27.79 25.97 32.31 36.76 18.37 16.59 40.32 28.3 19.58 15.22 14.96 119.18 29.14 27.42 27.41 26.33 32.12 32.22 31.82 33.25
1.63 1.67 1.3 2.07 5.32 7.72 7.43 8.18 5.8 5.6 4.65 6.66 6.94 7.19 6.39 6.43 7.6 4.68 4.92 6.28 5.18 5.83 8.14 6.1 5.51 3.47 4.6 8.24 7.4 3.77 4.58
3.94 3.2 4.19 3.29 6.06 9.04 4.29 3.77 5.45 4.5 5.76 4.86 4.76 9.22 9.25 6.85 5.79 4.76 5.38 6.1 5.28 5.1 12.05 6.52 5.32 3.52 5.06 4.77 6.54 5.03 4.99
Bra005541 (COP1)
 8.69 7.23 6.96 7.63 12.86 16.28 15.34 14.87 12.36 10.85 12.66 12.32 12.63 16.46 16.12 14.23 12.05 14.3 14.84 13.85 11.89 12.01 18.36 13.36 13.74 9.21 13.5 15.03 12.79 11.84 14.46
Bra006186 (VNI2)
 12.4 3.97 8.15 9.98 31.07 42.4 25.27 22.6 22.86 19.09 24.42 17.82 15.87 38.52 40.53 34.28 28.53 19.33 33.12 29.16 25.52 22.25 64.82 29.66 25.65 18.41 20.75 20.73 26.5 19.65 23.32
10.79 7.85 6.25 8.73 15.4 18.06 20.84 19.42 12.05 14.02 13.86 13.67 16.81 15.81 16.9 14.75 16.8 11.55 13.85 14.88 11.77 13.05 17.52 13.88 14.94 14.98 13.68 13.66 17.07 13.45 15.78
Bra007998 (SPI-1)
 67.83 71.31 46.36 31.48 172.98 166.65 46.85 26.94 105.59 103.28 78.78 88.93 60.94 126.67 178.63 99.68 98.73 158.61 163.25 100.5 88.5 134.99 299.19 114.99 103.24 77.83 105.52 97.56 81.47 122.98 118.71
6.49 6.77 7.52 6.76 8.1 12.24 6.61 6.67 8.79 7.8 8.41 7.9 8.11 12.03 10.78 10.25 9.7 9.81 10.01 8.84 9.4 9.34 13.95 8.45 8.2 4.48 7.44 7.01 9.47 7.48 9.53
Bra010376 (FLOE1)
 7.03 7.12 6.98 6.24 8.51 11.2 8.0 5.41 9.89 8.57 9.19 9.49 5.69 10.14 12.51 10.08 7.54 9.79 10.08 9.05 8.49 10.32 19.14 14.03 13.17 7.44 12.25 12.03 12.9 9.78 11.83
1.23 1.35 1.5 1.06 2.08 2.44 1.53 1.54 1.52 1.62 1.57 1.58 1.38 2.23 2.02 1.9 1.91 1.44 1.74 1.79 1.76 1.7 2.49 1.43 1.5 0.98 1.45 1.47 1.88 1.59 1.71
Bra010788 (INT2)
 1.3 0.8 0.61 0.73 16.23 20.4 10.64 8.64 15.88 14.92 10.62 11.43 11.43 20.44 22.56 14.61 12.14 16.35 13.06 10.79 9.31 12.73 41.73 14.85 12.69 7.54 12.43 12.03 15.06 13.33 16.71
Bra011201 (GGP1)
 51.67 31.41 25.45 40.69 116.43 148.93 164.23 87.37 112.74 103.64 84.39 70.16 133.53 194.82 144.03 161.6 134.79 159.77 119.46 104.58 123.87 114.88 139.66 170.92 155.16 120.38 130.47 150.27 158.81 78.93 109.24
Bra011412 (APM1)
 15.45 14.9 11.5 14.76 28.34 25.99 22.98 13.22 20.33 20.66 20.76 18.51 16.65 22.24 26.36 25.6 15.47 20.52 19.13 14.77 18.83 20.14 61.3 23.58 23.13 20.43 22.15 26.14 25.65 21.75 22.3
Bra012157 (ARA12)
 33.86 28.72 31.34 22.98 58.9 66.84 46.13 36.13 52.38 52.24 44.56 56.13 51.36 65.58 70.42 43.76 61.34 54.93 47.01 44.57 42.92 47.05 121.14 49.47 50.33 35.22 47.38 51.33 59.68 48.84 50.52
Bra013119 (RLP33)
 0.01 0.01 0.0 0.0 0.03 0.08 0.0 0.0 0.01 0.01 0.0 0.02 0.0 0.01 0.02 0.03 0.03 0.03 0.01 0.01 0.0 0.02 0.17 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra013656 (SGR)
 2.47 1.67 1.11 3.84 5.68 10.49 5.87 3.35 3.76 3.8 3.09 2.83 4.79 10.22 12.0 5.75 4.41 4.92 4.73 4.74 4.32 3.57 19.92 9.25 8.69 10.27 7.83 10.36 12.55 5.41 7.36
12.88 10.91 8.91 11.91 25.68 32.96 31.29 26.21 24.26 21.36 20.96 18.74 28.93 32.46 29.04 27.2 24.07 19.53 19.04 23.12 24.93 22.26 40.08 25.0 25.65 23.16 21.47 27.97 29.88 19.49 23.05
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.28 0.13 0.06 0.12 0.14 0.02 0.11 0.22 0.32
0.58 0.55 0.86 0.54 1.1 0.67 0.12 0.15 0.23 0.3 0.24 0.04 0.05 0.49 0.77 0.15 0.13 0.34 0.17 0.24 0.07 0.11 3.26 0.59 0.51 0.26 0.4 0.75 0.66 0.76 0.46
Bra016422 (SKP2A)
 6.99 5.62 4.97 9.48 13.41 23.97 19.9 9.94 11.84 17.49 13.28 14.73 16.67 20.26 22.84 21.79 22.3 15.45 19.95 15.62 16.29 17.31 45.49 25.71 26.74 17.94 24.44 9.12 12.36 13.75 32.02
Bra016602 (LOX3)
 0.1 0.06 0.09 0.02 0.43 0.91 0.62 0.47 0.72 0.34 0.24 0.53 0.27 0.57 0.73 0.72 0.52 0.89 0.71 0.79 0.54 0.2 2.32 0.92 0.9 0.93 0.74 0.61 1.05 1.13 1.36
Bra017527 (MYC3)
 13.36 14.28 24.65 11.41 28.31 26.48 16.81 16.49 21.3 19.98 24.97 21.35 14.28 31.37 33.21 22.31 19.48 25.58 25.98 23.34 25.66 24.26 43.08 27.34 24.86 15.6 24.63 31.27 35.29 29.7 24.91
Bra017818 (CYP81D4)
 2.33 1.88 2.48 2.67 5.64 6.3 6.48 4.24 7.32 6.12 6.73 7.29 8.83 7.04 6.42 7.97 7.1 3.7 4.43 5.03 6.21 5.27 18.14 7.9 8.19 7.23 8.08 5.68 11.62 10.18 20.05
Bra017915 (SCL1)
 4.54 6.33 6.45 2.22 7.89 7.47 4.58 4.45 6.57 4.97 5.4 6.42 4.38 6.16 6.54 5.24 4.69 7.22 5.49 5.74 5.08 6.02 25.32 6.52 6.84 4.31 6.19 7.15 9.13 9.32 10.03
0.31 0.52 0.31 0.1 0.41 0.87 0.17 0.05 0.08 0.13 0.1 0.09 0.13 0.25 0.43 0.02 0.21 0.94 0.13 0.15 0.14 0.29 1.71 0.13 0.23 0.14 0.21 0.08 0.19 0.14 0.25
7.07 7.01 5.41 7.2 16.31 18.69 16.49 11.82 13.89 14.03 14.82 12.72 13.85 22.21 22.84 16.51 15.47 16.09 14.62 15.3 14.09 15.21 17.9 15.42 16.05 8.89 13.52 13.73 14.85 14.26 19.53
Bra018722 (MRP4)
 5.32 4.31 6.37 7.04 10.7 17.42 15.21 10.53 10.53 10.59 9.48 9.03 15.2 16.15 19.05 18.56 14.32 16.08 12.28 12.79 11.7 12.18 22.59 12.08 13.02 12.2 11.93 14.57 14.26 9.34 14.4
5.16 3.58 3.48 2.16 6.9 8.39 4.59 3.4 6.25 5.23 4.5 5.09 3.84 6.22 8.25 5.62 6.97 6.42 4.25 3.66 3.92 3.22 16.11 6.64 6.42 6.58 4.99 7.41 6.48 6.34 6.67
Bra020855 (ISU1)
 59.84 63.27 47.53 57.46 126.65 133.51 76.3 71.72 111.61 108.35 87.62 119.67 83.6 144.56 163.86 117.19 95.8 109.02 119.35 114.76 112.02 110.71 268.7 119.92 110.82 95.51 119.45 107.21 93.98 112.77 117.95
Bra023598 (NIT2)
 126.4 104.0 147.34 202.31 247.77 486.94 522.0 399.92 437.02 345.58 373.99 327.78 402.03 792.04 575.96 404.9 290.85 531.88 436.75 311.99 360.84 286.89 1091.66 487.89 548.13 402.95 435.81 424.59 358.51 253.82 397.49
Bra023868 (NPF6.4)
 5.54 5.15 5.35 6.0 18.17 44.21 33.86 22.89 24.79 21.14 22.68 20.26 25.46 32.36 37.9 38.66 33.09 24.31 25.82 32.95 30.45 28.79 82.39 29.88 30.52 16.49 27.64 21.88 30.13 15.95 32.37
0.72 0.64 1.15 1.19 3.13 3.71 2.71 2.99 2.4 3.21 3.23 2.48 2.84 3.38 3.36 3.67 3.49 4.0 2.96 3.37 2.64 3.01 8.22 3.53 3.78 1.23 3.38 2.33 2.83 2.22 3.53
0.75 0.62 0.41 0.36 2.13 2.28 1.28 0.78 1.21 1.24 1.21 1.07 0.85 1.73 2.83 1.34 1.21 2.03 1.38 1.1 1.08 0.93 4.57 1.63 1.44 1.72 1.24 1.39 1.51 1.03 1.29
Bra026067 (MTP10)
 2.21 1.91 1.6 0.84 4.67 4.79 3.38 2.41 3.03 3.33 3.29 3.5 1.72 4.87 6.23 4.51 4.11 2.66 4.37 3.37 2.6 3.07 9.64 6.26 5.79 3.19 4.68 4.99 5.68 6.27 5.32
Bra026207 (PRX4)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.27 0.0 0.0 0.22 0.0 0.0 0.04 0.0 0.0
Bra026268 (FLOE1)
 2.87 4.4 3.69 4.46 6.49 9.13 5.63 3.05 7.63 6.19 6.03 5.48 6.69 14.83 13.29 9.8 6.18 13.26 7.87 7.16 7.06 7.79 20.16 8.96 8.37 4.83 7.9 5.53 5.46 4.31 6.59
Bra026481 (AAP7)
 1.79 1.15 0.74 0.7 4.0 6.87 2.78 1.5 2.72 1.92 1.62 2.27 1.88 2.89 4.58 1.5 2.31 2.98 3.34 2.91 2.15 3.02 10.4 3.56 3.36 1.88 2.72 2.83 3.73 2.63 3.18
Bra027319 (CYP72A11)
 4.6 3.79 4.38 3.32 14.09 12.96 3.11 5.67 9.74 5.3 5.25 7.96 1.83 10.92 15.97 3.19 1.56 12.89 8.01 3.43 3.1 3.26 60.31 4.88 5.05 2.39 4.01 20.91 20.94 16.68 16.76
Bra028474 (G6PD6)
 7.05 6.23 5.93 7.15 20.33 20.92 11.02 6.0 11.9 8.98 9.67 8.9 8.3 21.12 29.03 11.97 9.75 23.13 6.32 14.16 11.27 14.35 42.77 16.18 15.23 11.95 14.11 14.69 13.36 9.25 10.53
Bra028907 (LECRKA4.2)
 2.38 1.89 2.62 1.72 3.73 3.22 0.93 0.14 2.36 1.74 1.05 1.38 0.88 2.06 1.52 0.78 0.76 2.34 1.38 0.83 1.12 1.51 12.75 2.17 1.97 0.97 2.27 3.95 4.19 4.16 2.71
6.14 7.76 8.22 6.73 11.7 20.07 20.57 10.59 14.35 12.56 13.7 11.89 13.08 17.27 21.08 14.53 16.41 13.41 17.25 16.28 15.34 15.01 31.6 17.52 17.31 14.05 17.59 13.95 15.82 12.68 18.05
Bra029440 (COG0354)
 1.13 0.8 0.66 1.08 3.81 4.3 5.78 6.24 3.99 2.88 4.02 3.2 6.42 9.78 9.48 6.27 6.03 6.9 6.91 4.28 4.83 4.42 12.96 5.67 5.92 3.48 5.45 4.84 3.93 2.78 4.98
Bra029728 (RGP)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.05 0.01 0.01 0.02 0.04 0.02
Bra029779 (RCF1)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.02 0.0 0.0 0.0 0.0 0.0 0.02 0.03 0.0 0.0 0.01 0.01 0.1 0.0 0.0 0.0 0.01 0.02 0.03 0.01 0.11
Bra030994 (SOC3)
 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0
8.94 5.94 5.46 3.45 12.96 21.32 14.88 11.88 13.85 9.67 13.91 9.97 12.08 19.89 21.49 16.34 12.44 14.8 15.99 13.57 11.31 11.47 20.23 11.06 12.23 3.42 9.92 11.11 12.62 7.18 12.5
Bra031307 (HYR1)
 18.22 13.25 8.88 10.57 45.12 62.97 46.25 43.22 39.3 27.51 26.74 30.41 24.67 53.07 52.96 38.27 28.81 63.37 60.56 40.15 37.88 35.4 37.93 41.23 34.84 22.65 37.51 55.54 47.52 31.1 30.55
Bra031351 (HSR3)
 31.91 20.86 14.09 20.82 70.41 91.01 70.73 55.34 55.44 39.08 42.11 41.76 34.59 68.49 86.03 55.82 46.06 65.48 51.64 54.97 49.14 49.35 258.61 66.19 55.33 42.46 54.96 96.6 108.3 76.61 59.23
Bra031444 (BRD4)
 0.93 0.69 1.12 0.6 1.99 3.0 2.37 1.93 1.46 1.4 1.46 1.69 1.91 3.16 2.38 2.13 1.76 3.02 2.22 2.36 1.79 1.82 3.71 2.53 2.01 1.01 2.59 2.5 2.75 2.31 2.41
Bra031513 (NRX1)
 12.26 11.42 8.99 8.91 17.38 23.72 18.63 15.39 14.37 16.27 14.13 15.82 16.74 19.02 24.25 19.48 16.78 15.59 16.42 15.56 16.63 19.42 37.01 12.79 13.54 10.1 12.73 13.49 12.95 13.6 11.72
Bra031950 (NAC046)
 0.26 0.04 0.06 0.13 2.51 4.13 0.84 0.12 0.86 0.73 0.42 0.48 0.57 1.76 1.44 0.56 0.73 2.01 1.56 0.55 0.72 0.98 8.94 2.17 1.78 0.25 0.88 1.67 1.77 0.88 0.44
24.73 18.0 12.32 18.22 54.96 53.97 33.26 32.73 38.43 35.17 33.9 29.13 29.36 62.71 65.76 42.55 33.92 54.6 47.63 33.99 35.84 34.76 177.84 49.27 48.1 35.68 44.91 50.91 65.22 54.88 90.0
Bra032849 (SAT32)
 23.25 19.87 16.09 21.7 31.18 53.88 44.9 32.41 32.36 31.05 28.15 26.06 35.33 49.62 52.64 41.95 35.91 61.93 52.73 38.27 32.16 32.95 58.85 45.89 46.36 33.22 43.18 46.05 37.83 23.07 26.44
Bra034152 (DAFL1)
 1.19 1.21 0.8 0.61 2.08 8.49 3.12 3.38 3.63 3.13 4.43 2.57 3.26 6.44 6.07 4.89 4.24 4.63 3.49 4.44 3.89 4.34 15.4 8.26 7.28 4.04 5.25 6.28 10.5 4.73 4.71
Bra034215 (CASPL1C1)
 0.0 0.0 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.33 0.0 0.0 0.04 0.0 0.79 0.0 0.07 0.0 0.0 1.23 0.33 0.22 0.16 0.1 0.29 0.8 0.81 1.74
Bra034706 (MRP7)
 0.31 0.44 0.48 0.37 0.74 0.94 0.4 0.38 0.94 0.71 0.86 0.86 0.27 1.44 1.18 1.14 0.85 0.33 0.79 0.61 0.59 1.0 2.92 0.96 0.9 0.94 1.03 0.88 0.91 1.54 2.11
Bra036635 (VPT1)
 8.72 8.56 8.96 9.38 9.07 10.33 11.01 12.98 14.32 13.56 12.29 12.33 12.33 14.33 15.23 12.91 14.0 7.63 8.44 11.24 9.8 11.78 24.15 12.29 13.42 13.43 15.23 12.38 14.34 15.68 17.23
Bra036876 (MDA1)
 6.17 4.46 4.97 4.08 9.67 10.73 10.7 9.89 8.76 7.35 8.3 8.16 8.04 12.0 12.71 11.86 10.02 12.6 12.47 10.86 9.23 9.7 11.75 10.74 9.63 5.72 9.73 9.21 9.4 8.86 10.61
Bra037555 (PMT5)
 4.52 2.35 2.89 2.48 40.89 84.39 26.95 10.64 34.59 31.92 26.51 30.85 21.22 56.71 76.33 54.16 39.72 55.05 45.49 34.74 41.96 39.95 129.06 37.8 36.55 22.21 34.79 43.17 41.85 21.35 22.6
1.09 0.72 0.95 0.96 3.43 7.6 2.5 2.25 2.67 2.21 2.75 2.47 2.63 6.82 7.72 3.42 2.87 6.4 4.96 3.25 3.04 3.79 11.11 4.82 3.57 2.77 3.29 6.96 4.49 1.5 2.01
Bra038499 (MES16)
 7.2 4.9 2.99 4.26 8.67 22.81 7.12 1.17 5.97 3.77 6.7 5.82 7.42 9.97 5.6 6.65 6.93 8.91 6.68 11.24 6.09 9.3 39.25 7.81 7.48 5.34 7.2 5.56 9.2 3.51 6.38
Bra039658 (ERF8)
 0.48 0.48 0.45 2.1 1.38 3.53 1.77 0.23 1.19 0.19 1.69 0.93 1.09 5.22 5.99 1.9 0.92 4.33 3.13 1.43 1.84 1.09 9.23 2.39 1.14 1.33 1.11 0.8 1.03 0.58 0.81
0.61 0.72 0.58 0.51 1.31 1.3 0.79 0.65 0.61 0.85 0.87 0.59 0.68 1.19 1.95 0.8 0.78 0.79 0.79 0.79 0.84 0.77 2.27 1.52 1.59 1.27 1.44 1.73 1.61 1.78 1.97
Bra040998 (CRK7)
 1.67 1.32 2.43 0.63 6.6 23.64 8.15 3.37 6.99 6.03 4.95 6.25 7.14 11.25 16.8 6.72 6.8 9.52 4.87 4.94 5.37 8.78 50.8 8.97 8.56 3.32 10.91 4.17 10.11 12.17 16.25

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)