Heatmap: Cluster_506 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
0.74 0.17 0.62 0.83 0.94 1.53 1.03 -1.09 -0.82 -0.32 -1.3 -0.66 -0.11 0.09 -0.26 -0.04 -0.71 -0.17 0.54 0.42 0.42 0.2 1.32 -3.55 -2.42 -3.48 -3.48 -1.59 -1.22 -0.51 -2.31
Bra018730 (IRE3)
0.95 0.53 -0.71 0.5 -0.55 1.37 1.2 -0.7 0.95 0.9 0.18 1.19 -1.6 -0.63 -0.27 -0.77 0.6 -1.46 0.16 1.61 0.77 -1.38 - -2.71 -2.61 -4.37 -1.44 -2.56 -1.64 -1.92 -2.28
Bra019737 (LRX1)
-0.32 -0.85 1.06 -1.26 0.78 1.73 1.45 0.15 0.33 0.08 0.04 -0.4 0.12 -2.42 -3.66 0.76 0.3 -0.28 0.33 -1.7 -0.9 0.7 2.16 -4.21 -2.49 -4.13 - - -2.89 - -1.09
Bra021556 (GOX1)
0.49 0.36 0.04 0.34 -0.03 0.25 0.25 -0.19 0.43 0.17 -0.17 0.16 0.4 -0.67 0.12 -0.49 -0.02 -1.83 -0.19 0.67 0.43 0.24 -1.81 -0.28 -0.16 -0.13 -0.12 -0.29 -0.07 -0.51 -0.02
0.95 0.72 0.54 0.32 0.19 1.33 0.76 0.53 0.45 0.28 0.55 0.19 -1.18 -0.96 -0.39 0.04 -0.35 -1.67 0.12 0.67 0.51 0.6 0.62 -2.17 -3.51 -3.65 -1.9 -3.76 -3.08 -0.76 -1.78
Bra033193 (ATL07)
0.22 -0.14 -0.31 -0.22 -0.18 0.0 0.2 -0.06 -0.03 0.11 0.26 0.5 -0.6 0.32 -0.65 0.12 0.2 -0.48 0.58 0.87 0.62 0.39 -1.58 -0.07 0.03 -0.81 -0.06 -0.37 -0.3 -0.37 -0.45

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.