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Heatmap: Cluster_376 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra014132 (FAN1)
 0.33 0.4 0.25 -0.34 0.97 1.17 -0.06 -0.52 0.45 -0.18 -0.22 -0.93 -0.22 0.03 0.98 -0.56 -0.05 0.9 0.17 0.32 -0.87 -0.3 -0.58 -0.83 -0.99 -0.38 -0.86 -0.08 -0.84 -0.61 -0.71
Bra027854 (MDL1)
 0.11 0.06 0.6 0.08 1.2 1.21 0.44 0.59 -0.0 0.03 0.12 -0.1 -0.45 0.22 1.28 -0.12 0.14 0.41 0.07 0.71 -0.63 -0.5 -1.84 -1.04 -1.04 -2.05 -1.36 -1.54 -1.85 -1.73 -1.91
Bra031380 (AtHMP49)
 1.12 0.83 1.27 0.47 1.84 1.77 0.48 0.55 -1.28 -2.75 -0.23 -0.15 -2.62 -2.11 1.86 - 0.9 -0.06 -0.14 0.99 -1.13 -0.15 - - - - - - - - -
0.4 0.07 -1.14 - 1.35 2.31 0.15 - -0.14 -0.04 -0.66 -0.08 - -0.98 2.05 -0.47 -0.57 -0.3 -2.4 1.92 -2.42 - - -1.41 -0.33 -0.02 -1.15 -2.09 -1.08 -0.64 0.19

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.