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Heatmap: Cluster_580 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra005919 (PGIP2)
 -0.03 0.32 0.3 1.31 -0.95 -1.05 0.3 -0.78 -0.05 -0.17 0.24 -0.25 -1.33 -3.33 -1.17 0.16 -0.49 0.74 -0.82 -0.23 -0.67 0.25 -0.15 0.46 0.41 0.75 0.29 -0.25 -0.18 0.34 0.27
Bra009428 (OFP13)
 -1.23 -0.18 -0.35 1.1 -0.15 -1.01 -0.52 -0.48 0.08 0.07 0.08 0.06 -0.11 -0.22 -1.14 0.09 -0.46 -0.05 -0.41 0.24 -0.08 -0.22 -0.24 0.62 0.19 0.53 0.27 0.37 0.22 -0.02 0.46
0.89 1.44 1.14 1.49 -1.38 - -1.54 -3.77 -1.3 -0.61 -3.93 -3.74 - -3.42 - - -2.55 1.07 - -0.09 0.64 -0.83 - 1.07 1.17 1.44 -0.11 0.5 0.37 1.13 0.18

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.