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Heatmap: Cluster_139 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - 2.0 - - - - - 1.72 - 3.38 - 2.2 - 2.18 2.07 - - - - - - - - - - - - - - -
-0.11 0.24 0.2 -0.76 -0.48 -1.65 0.08 0.01 1.51 0.58 0.59 -0.11 -1.36 -1.45 0.88 -0.55 0.44 1.51 1.67 0.2 0.45 0.64 -2.1 -2.67 -1.65 -2.1 -2.17 -1.62 -1.54 -1.17 -1.88
Bra000834 (RPP2D)
 - - - - - - - - - - 3.15 - - - - - - 2.6 - - - 3.19 - - - - - - - - 2.8
Bra001113 (ULI3)
 0.08 -1.52 -0.27 -2.62 0.55 1.1 0.16 -0.92 -0.68 0.54 0.15 0.22 -0.49 1.58 1.15 1.15 0.35 -0.1 0.78 0.17 -1.09 -0.63 -1.16 -1.72 -1.17 -1.37 -0.76 -1.0 -0.4 -0.56 -0.77
- - - - 1.58 -0.14 - - - - 2.99 - 1.22 2.56 - - 1.56 - 1.43 - 2.07 - 0.16 - - - - - - - -
- - - - - - -0.42 -0.18 -0.33 1.35 2.29 0.8 1.02 - - 1.02 - -0.24 1.76 2.22 -0.25 - 0.9 - - 0.81 - - 0.07 -0.1 -
Bra002155 (PUB48)
 - - - - - -0.09 -2.16 -0.57 0.97 -2.42 0.65 1.06 -1.09 0.95 0.44 0.13 0.47 -2.02 0.13 1.43 0.55 1.22 0.44 0.13 0.49 -0.43 0.52 -0.31 0.05 -0.03 -1.16
Bra002467 (PUM11)
 - - - - - 0.07 -1.19 0.06 3.02 - 0.96 0.67 0.28 - -0.73 - 0.19 1.85 2.14 - 0.71 -0.0 0.1 -1.03 0.05 - - -0.57 - - -
Bra003582 (ZFP1)
 -2.06 -1.65 -0.21 -3.65 1.94 1.1 -1.47 -0.31 -1.0 1.23 0.67 -0.39 -0.22 -0.73 0.81 0.19 -0.56 -2.29 -0.01 -1.92 -2.38 -0.18 -0.09 1.37 0.51 -0.83 -0.03 -0.16 -1.06 -0.46 0.0
Bra004115 (GLC)
 - - - - 1.99 0.48 - - 1.38 2.0 0.99 - -1.6 -1.5 - 0.97 1.32 -0.1 1.59 1.03 1.66 1.28 - - - - - -1.59 - - -
Bra005930 (RBL3)
 -4.1 - -5.2 -1.77 0.59 1.75 -0.16 -1.12 -0.38 -0.73 0.29 -1.26 -2.16 2.03 1.27 0.97 -0.82 -0.58 -0.96 -0.18 -0.23 -0.41 -1.79 0.44 0.36 -1.25 0.29 -0.31 0.93 -0.43 -1.14
Bra006436 (SAUR21)
 -0.35 -1.05 -2.89 0.15 -0.99 -1.92 -0.94 -1.86 0.21 0.04 0.92 1.09 -2.41 -0.83 -0.63 0.1 0.69 -0.44 0.22 0.72 1.28 0.31 -1.65 0.76 0.64 0.2 0.76 -0.23 -0.46 -0.73 -0.26
0.73 0.3 -0.62 0.35 0.97 0.8 1.11 0.87 0.22 0.64 1.32 0.46 -0.27 0.35 -1.17 -2.19 0.43 -1.42 -0.94 -1.07 -2.4 -0.26 -1.85 - -0.88 -0.77 -0.44 -1.19 -0.43 0.29 -0.28
Bra006746 (Mik)
 - - - - - - - 0.72 0.06 0.82 1.86 1.31 - - - 0.15 0.14 - - - 1.6 1.95 - - 0.04 - 2.42 - 0.02 -0.04 1.56
- - - - 0.97 -0.44 -0.06 0.75 -0.57 -1.49 -0.59 0.83 0.85 0.41 0.01 1.06 - 1.61 2.31 1.19 1.67 1.32 - - - - - - - - -
-0.4 0.08 0.26 -0.59 -0.23 -0.26 -0.52 0.24 0.63 -0.06 0.23 -0.2 0.04 0.68 0.57 -0.15 0.05 0.72 0.34 0.06 -0.25 0.28 -0.31 -0.4 -0.43 -0.43 -0.37 -0.01 -0.18 -0.1 -0.93
0.28 -1.5 0.08 -0.75 0.89 -0.38 0.03 0.05 1.42 0.75 1.17 0.17 0.23 -0.86 0.43 0.71 1.25 -0.79 0.59 1.16 0.53 -1.45 -3.25 -3.67 -1.66 -1.65 -3.7 -1.53 -2.28 -1.07 -2.07
Bra007957 (MYBL2)
 -2.34 1.42 -0.39 -1.89 -3.0 -2.38 -0.09 0.84 -0.73 1.11 1.67 -0.76 -0.3 -2.33 -2.16 -4.66 -0.08 -1.39 -0.35 0.36 -1.65 -2.22 0.82 0.59 0.24 0.78 0.88 -1.25 -0.79 0.55 0.89
Bra007958 (EIF3G1)
 - - - - -3.03 - -1.09 1.7 0.38 0.75 0.23 -0.95 0.03 -0.71 0.14 - -0.44 0.4 0.63 0.88 -4.07 -1.38 1.03 -0.44 0.24 0.69 0.51 0.13 0.41 0.59 1.55
Bra008208 (Hop2)
 - - - - - 0.15 -0.55 -1.68 - 0.98 -1.03 1.51 -0.44 1.29 1.57 1.67 1.77 -1.84 2.48 1.35 0.9 -0.83 - - - - - - - - -
Bra010000 (PECT1)
 -1.42 -2.08 -0.06 -0.78 0.14 -1.02 -2.2 -0.31 0.38 -0.86 1.51 -0.06 0.34 1.41 -0.45 -0.48 -0.27 -1.32 -0.01 0.12 -0.7 0.27 0.75 -0.12 0.2 -0.27 -0.09 -1.48 0.62 0.56 0.25
- - -1.06 - -0.68 - - 0.2 0.01 0.57 1.37 2.72 -0.36 0.77 2.18 - 0.1 - -0.34 1.14 -1.47 1.04 1.52 - -1.47 - - -1.52 - - -
-0.24 -0.03 -0.17 -0.38 0.39 0.44 -1.05 0.05 -0.5 0.24 -0.5 0.83 0.01 0.59 0.59 -0.02 -0.56 0.36 0.5 -0.14 0.43 0.42 -0.04 -0.52 -0.58 -0.26 -0.57 -0.36 -0.32 -0.45 -0.28
Bra011893 (PRP4)
 -1.6 -1.96 -1.56 -2.86 -0.06 -0.27 0.06 -0.03 1.41 0.63 0.67 0.32 -0.31 -0.05 -0.18 0.05 0.91 -1.49 0.53 1.62 0.99 0.85 -3.96 -0.27 -0.99 -0.86 -0.73 -0.4 -0.61 -0.94 -1.5
- - - - - - - - 2.14 - - - - 0.83 - - - - - 1.79 2.34 - - - - 3.3 2.7 - - - -
0.62 - - 2.16 - 0.9 - - - - -0.23 - 1.15 2.89 - - - - 0.09 - - - - 1.17 - - 1.65 - - 0.25 2.33
- - - - -0.45 -1.62 - -0.36 0.48 -0.02 - 0.9 -1.39 1.37 1.67 - -0.49 1.17 -1.46 - 0.02 -0.18 0.42 2.14 -0.57 0.73 -1.64 -1.38 -1.37 0.47 1.58
-0.45 0.02 0.54 -0.65 0.08 -0.38 -0.32 0.12 0.67 0.53 -0.34 -0.14 1.29 -0.06 -0.04 0.46 0.77 -0.22 -1.06 -0.2 -0.81 -0.34 0.04 -0.17 -1.99 0.41 -1.48 -0.63 -0.09 -0.08 0.4
Bra014304 (IQD27)
 - - - - - - - - - 1.7 3.31 - 0.28 - 1.88 - - - - 2.14 - - 0.08 - - - - - 1.33 0.19 1.94
Bra014555 (VHA-D)
 0.88 0.71 0.36 -1.26 0.58 -0.23 -0.84 0.34 0.23 -1.18 0.93 0.91 0.59 0.01 1.76 -1.98 -2.02 0.62 -0.55 -0.14 -0.63 1.91 - - -2.24 - -0.53 - -2.07 -0.13 -2.07
Bra014592 (RAB1C)
 - - - - - - - - - - 4.29 - - - - - - - - - 3.52 - - - - - - - - - -
Bra014641 (MEI1)
 -0.02 - -24.64 - - - -0.56 0.21 -0.1 0.76 1.52 1.92 - 0.53 1.74 0.28 1.33 1.31 0.78 0.24 -1.66 0.95 -2.23 -2.49 -1.64 -1.88 -1.45 -1.46 -1.04 -1.4 -2.28
Bra016294 (FEZ)
 - - - - - - - - - - 3.78 - - - 3.18 - - - - - - - - - - - - - - - 3.03
Bra017375 (MRH6)
 - - - - - 0.0 2.48 1.69 1.46 2.15 - 1.57 - - - - -0.38 - 1.93 1.08 1.5 0.6 - - - - - - - - -
0.3 - - - 1.74 0.05 0.41 - 2.77 - 3.03 - - 0.21 - 0.86 -0.83 - 2.14 -0.83 - -0.84 - - - - - - - - -
Bra018132 (WAKL8)
 -3.43 -2.42 -3.65 -3.26 -1.7 -0.31 -1.8 -0.35 0.41 0.65 -0.24 0.21 -0.63 0.3 0.98 0.5 0.16 -0.28 0.05 1.14 0.58 0.59 1.23 -0.29 0.37 -0.53 -0.09 -0.04 -0.17 0.1 -0.04
Bra018349 (EIF3G1)
 - - - - -3.03 - -1.09 1.7 0.38 0.75 0.23 -0.95 0.03 -0.71 0.14 - -0.44 0.4 0.63 0.88 -4.07 -1.38 1.03 -0.44 0.24 0.69 0.51 0.13 0.41 0.59 1.55
- - - - - - - -1.08 0.4 1.09 1.99 - - 0.97 0.83 -0.28 -1.35 2.54 1.98 0.91 0.9 1.35 - - -1.43 - - -1.14 - - 0.33
- - - - - 0.86 1.08 0.53 1.67 1.21 0.19 - - - 1.9 1.07 -0.59 1.74 2.61 0.35 0.21 - - - - - - - - -0.66 -
Bra019678 (AtDAO2)
 0.77 0.27 -0.3 -1.74 -0.59 -1.26 -0.02 0.24 0.52 1.3 0.62 0.13 0.17 -1.39 0.15 0.43 0.79 0.36 -0.86 -0.83 0.13 -0.22 0.17 -1.17 -0.79 -1.48 -0.89 -0.7 -0.61 0.48 0.53
Bra019699 (PAP2)
 0.24 -1.78 -2.29 -0.4 -0.52 0.4 0.48 1.14 -0.33 0.43 -1.35 0.84 -0.0 0.3 1.44 1.76 0.62 -1.25 1.06 0.2 -0.28 0.69 -2.18 - - -1.2 -2.2 -1.92 -0.37 -1.98 -0.95
Bra019799 (ERF1-2)
 - - 0.34 - - 1.47 0.29 - - 0.45 2.26 - - - - - 2.05 - - - - 2.02 - -0.45 - -0.47 -0.41 -0.38 0.5 1.05 2.3
-0.64 -0.76 -0.49 -0.64 -0.17 -0.24 -0.8 -0.5 0.28 0.7 -0.11 0.85 -0.18 0.67 0.22 -0.13 0.39 -0.0 -0.33 -0.64 -0.78 -0.09 0.29 0.22 0.23 0.21 0.04 0.26 0.1 0.03 -0.05
- - - - - - 3.87 - - - 4.03 - - - - - - - - - - - - - - - - - - - -
Bra022404 (CPL5)
 1.01 - -0.56 -0.99 - - -0.5 - 1.25 - 2.15 - -0.21 -2.42 -0.97 -11.92 - - -1.66 - 2.31 1.57 0.92 0.02 -1.13 1.9 1.63 -1.93 - - -
- - - - -1.08 0.96 -2.0 0.17 1.86 0.28 2.06 1.02 0.47 0.51 0.35 1.55 0.23 -1.23 -0.03 0.35 0.62 -0.07 0.99 - - -1.38 -2.76 - - -1.65 -
1.0 -0.49 1.95 - - - - - 1.69 1.44 - -0.81 - - - - - - 2.66 - - 0.14 - 1.12 - 1.18 - -0.55 0.27 1.81 -0.63
- - - - - - - - 0.63 1.31 2.75 1.31 -0.77 - 2.35 1.45 - 1.21 1.25 - 1.43 0.97 - - - - - - - - -
- 1.55 - - - - - - - - 3.37 1.18 - - 3.03 - - - - - - - - - - 1.17 - - 1.39 - 1.27
Bra023769 (ATBM1C)
 1.21 - 0.4 - 1.99 - -1.14 0.2 0.71 1.49 0.47 -0.89 - - -0.65 1.34 2.13 - -1.02 1.93 -0.0 - - -0.04 - - - - -0.86 - 0.13
Bra023873 (VIH2)
 - - 0.6 -1.76 -1.3 -0.12 0.99 1.62 - -0.78 1.33 -1.1 0.24 2.06 0.96 - 1.25 - 1.59 - 2.21 -1.12 - - - - -0.01 - -1.04 - -
Bra023996 (GFS1)
 -4.2 -0.22 - -0.02 2.1 - -4.75 0.3 2.0 1.24 1.05 0.7 0.47 -3.7 1.4 0.91 -0.36 0.66 0.4 1.8 -5.55 - -3.42 -5.56 -3.85 - -4.49 - -5.39 - -4.4
Bra024898 (IAA32)
 - - 1.17 - 1.07 -0.04 0.68 0.17 - 1.0 - 0.01 0.17 1.08 1.85 0.18 - - - - - - 1.97 - 1.52 0.96 - - 1.07 - 0.16
Bra024937 (RABA5a)
 0.11 -0.14 -0.15 0.03 0.63 -0.08 0.29 0.35 0.62 0.02 0.55 0.1 -0.84 0.45 -0.04 -0.27 -0.46 -0.61 0.04 -0.16 -0.27 -0.28 -0.54 -0.12 -0.16 -0.03 -0.32 0.04 0.01 0.17 -0.18
- -2.25 -0.2 0.5 - -1.69 -0.82 -0.71 0.8 -1.1 -0.56 0.3 0.5 1.77 0.92 -2.45 0.2 0.65 -2.78 -0.63 -0.06 -2.69 -2.62 1.26 -1.14 0.78 0.17 -0.88 -0.18 0.4 1.48
Bra025136 (SIS3)
 - 1.1 - -0.26 - - - - 1.6 - - 1.98 - - - -0.04 1.94 0.71 0.54 -0.18 0.75 - - 1.27 1.76 - - 1.01 - 0.84 -0.07
Bra025197 (TET6)
 - - - - - - 0.27 - - 0.42 2.42 1.06 - 1.86 1.5 - 1.11 - 0.2 - 1.94 0.88 0.4 - -0.53 - - - -0.47 1.49 -
Bra026525 (CR88)
 - - - - - - - 1.31 1.87 - 3.25 - - - 1.34 1.23 - 1.98 2.2 - 0.94 - - - - - - - - - -
Bra026966 (HPR3)
 -0.62 -0.44 -0.77 -1.5 0.9 0.1 -1.88 -0.8 -0.36 -0.34 -0.29 -0.05 -0.43 1.31 1.42 0.66 0.14 0.11 0.17 -0.5 -0.21 -0.6 -3.02 0.41 0.2 -0.1 0.05 0.01 -0.06 0.08 -0.09
- - - - - - - - 0.45 0.3 2.75 0.25 1.28 - 2.89 0.89 - 0.21 0.65 - 1.8 1.37 - - - - - - - - -
Bra028534 (PAP21)
 - - - - - - - - - 0.75 1.88 2.85 - - 1.65 1.76 - - -1.03 1.28 2.05 0.2 - - 1.56 -0.43 - - - - -
Bra028813 (MLS)
 - - - -1.1 - 1.18 1.49 0.82 0.68 - 2.88 - 1.03 - - 0.62 1.38 - - - - -0.29 0.89 0.76 - - -0.98 - - - 1.86
Bra029512 (CPK31)
 0.82 -0.37 -0.22 -0.74 0.88 0.44 0.6 0.4 0.43 0.91 1.15 0.11 -0.44 -2.17 -1.48 -0.81 -0.4 0.35 -0.35 0.54 -0.1 0.18 -2.84 -0.82 -0.87 -1.6 -0.3 -1.04 -0.23 0.04 0.54
-3.03 -0.94 -0.05 -1.92 -0.18 0.58 -1.27 -0.12 0.21 0.55 -0.31 0.59 -0.29 1.48 0.5 -0.23 0.33 0.74 0.44 0.34 0.01 0.69 -0.01 -2.17 -1.17 -0.75 -0.07 -0.0 -0.19 -0.32 -0.85
1.46 - - - 1.37 - - - - - 2.77 - 2.64 1.66 - - - - - - - 2.19 - - - - 1.29 - - - 1.27
Bra032464 (OFP12)
 0.42 -0.74 0.91 -0.41 - -1.13 -0.49 -1.42 -0.15 -0.06 1.17 1.12 1.38 -2.34 -2.82 -0.74 0.01 -0.33 -0.14 -0.05 0.64 -0.11 1.56 -0.13 -0.17 -1.16 -0.08 -1.04 0.68 -2.49 -0.97
Bra033196 (CPN20)
 - -0.35 - - -0.59 -0.75 - 1.49 -0.88 -0.83 - 0.14 -0.52 1.42 2.33 -0.48 -0.64 -0.51 2.61 - - 1.12 - 0.16 - -0.73 - - -0.52 - 1.47
- - - - - 0.13 0.04 - 1.01 1.17 2.65 0.3 0.37 0.62 - 2.78 - 0.26 2.64 - - - - - - - - - - - -
Bra033625 (CYP96A2)
 - - - - 1.53 - - 1.63 - 2.97 - 1.25 - - 1.66 1.62 - - 1.52 - - - - - 1.34 - - - - - 1.65
Bra033703 (YUC5)
 - - 1.59 - 0.66 -0.4 - - - - 2.66 -0.53 1.39 - - - -0.29 - - 1.22 - - 2.64 - - - 0.56 - -0.15 0.78 1.37
Bra033829 (DHDPS)
 -5.55 -1.48 -0.9 0.26 -0.39 1.1 0.76 0.69 1.17 2.16 0.29 1.38 -3.31 0.84 -4.72 1.98 0.79 -2.67 -4.26 1.28 -5.67 0.73 -4.53 -5.2 -6.28 -5.24 -5.9 -5.98 -6.05 -6.84 -5.77
-0.45 -1.01 -0.3 0.08 -0.48 -1.69 -0.67 1.43 -1.15 -0.11 1.9 1.39 -0.26 0.21 1.53 -0.8 -0.77 0.55 1.41 -0.8 -1.27 -1.04 0.01 -0.94 -2.84 -2.84 -2.0 -1.15 -0.68 -0.22 -2.23
- - - - 2.36 0.54 - - -0.16 1.27 - - -0.8 - 1.0 -0.65 - -0.59 - - 2.22 0.66 2.26 -0.88 -0.52 0.66 -0.86 0.27 0.67 - -
- - -0.76 - 1.12 -0.63 1.45 -0.76 0.87 1.39 0.19 1.22 - - 1.57 -0.37 - - 2.28 1.03 2.07 - - - -0.33 - - - -0.42 - -
- - 1.95 - -0.92 -0.93 0.97 - - -0.97 0.98 0.61 1.39 - 1.75 0.97 0.25 1.64 0.86 - - 2.45 -0.8 - - - - - - - -
- 0.56 - -1.0 -0.49 -1.51 - -0.46 - 1.08 2.02 -0.07 1.32 - -0.16 - -0.32 -0.52 - -1.41 2.27 0.42 2.59 0.04 - - -1.47 -1.23 -1.19 -1.34 -
Bra038914 (CYP98A8)
 2.56 1.56 - - 0.78 1.29 1.06 - - - - - 1.56 - 1.18 - - 0.87 - - -0.06 2.35 0.89 - - - - - - -0.11 -
- 0.77 - 0.42 - - 1.35 0.29 - - 2.33 - 0.82 - - 0.68 1.63 0.37 2.18 - - 2.78 - - - - - - - - -
Bra039552 (RTL1)
 - - 2.74 - - - - 1.37 2.62 0.48 2.66 - - - - - - - - - - 2.37 0.48 0.36 - - - - - - -
- - - - - - - 1.72 - - 3.37 - 2.17 2.22 2.19 - - - - - - - - - - - 1.87 - - - -
Bra039601 (RVR1)
 - - -1.52 - 0.06 0.44 -2.65 -0.32 0.57 1.37 -0.24 1.43 1.5 -0.63 -1.02 0.82 0.67 0.17 2.24 0.86 1.41 0.7 - - - - - - - -1.2 -
0.16 -0.14 0.36 0.28 0.02 -0.35 -1.29 0.19 0.22 0.5 -0.36 -0.58 0.01 -1.35 -1.1 0.1 0.23 -1.3 -0.06 1.08 -1.15 -1.07 -1.3 0.5 0.84 0.71 0.34 0.15 0.04 -0.01 -0.07
- -0.64 -1.91 0.42 0.24 0.03 -0.29 0.05 0.59 -0.76 0.12 0.78 -0.16 0.72 -0.22 0.28 0.96 -1.12 0.15 0.09 -0.43 -0.13 -0.24 -0.08 1.21 -0.37 0.01 -0.03 -0.51 -0.28 -0.8

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.