Heatmap: Cluster_925 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra010840 (APY1)
-0.79 -0.35 0.49 -0.66 -1.29 -0.49 -0.82 -0.56 0.41 0.27 -0.5 0.87 0.42 -0.39 -0.76 -0.43 -0.77 0.13 0.31 -0.51 1.02 -0.49 0.02 0.41 -0.26 -0.37 0.65 0.38 0.08 0.22 0.39
Bra036819 (ROP1)
-0.17 -0.41 -0.46 -0.94 0.43 -0.19 0.3 0.08 0.0 -0.79 -0.46 0.64 1.01 -0.3 0.33 -0.86 -0.49 -0.16 0.12 -0.95 0.04 -0.79 -0.49 0.71 0.25 -0.67 0.65 0.19 0.41 -0.05 0.15

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.