Heatmap: Cluster_340 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.71 1.31 0.87 1.49 -0.2 -1.49 -0.25 -0.85 -0.72 -1.45 -0.43 -0.58 -1.99 -0.19 -2.41 -0.96 -0.43 -2.08 -2.3 -2.7 -1.46 -1.01 0.38 -0.01 0.35 0.44 0.93 0.91 1.11 0.88 0.61
Bra018471 (CYP706A6)
-0.86 1.38 0.8 -0.17 -1.05 0.29 -1.0 -0.18 0.17 -8.88 -1.45 -1.13 -1.22 -6.1 -1.57 -2.1 -0.83 -2.27 -0.85 -1.64 -1.99 -0.96 -0.28 0.73 0.98 0.39 0.84 1.33 1.31 1.22 0.91
Bra018501 (APR)
-0.19 2.22 1.77 0.59 -2.35 -1.84 -2.48 -1.14 -0.87 - -1.7 -1.81 -2.03 - -3.69 -1.31 -0.82 - -2.19 -3.84 -2.62 -1.22 0.4 0.32 0.2 1.31 1.19 0.88 0.31 0.92 1.41
Bra018502 (APR)
-1.43 1.82 2.05 0.58 -2.14 -1.24 -3.48 -0.3 -0.91 - -1.63 -1.46 -0.71 - -1.57 -1.77 -0.95 -2.58 -1.64 -2.25 -2.97 -1.6 0.75 0.8 0.76 1.47 0.43 0.05 -0.1 0.58 1.63
-0.88 0.38 0.52 -1.75 -0.41 0.54 -0.63 -2.04 -0.17 -1.74 -1.34 -0.29 -0.49 -0.39 1.28 -1.8 0.1 -1.4 -0.35 -1.83 -0.69 -1.46 1.03 -0.35 0.4 0.7 0.85 0.64 0.87 0.82 0.59
Bra033116 (GAE5)
-2.41 1.2 0.75 -0.56 -0.67 0.61 -0.91 -1.25 -0.1 -1.61 -1.22 -1.04 -0.57 -0.87 0.6 -1.41 -0.33 -0.57 -0.79 -1.44 -0.72 -0.77 0.99 0.27 0.14 -0.03 0.55 0.5 0.85 1.05 1.09

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.