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Heatmap: Cluster_386 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra023485 (CA2)
 -1.38 0.62 0.6 1.15 -0.35 -0.73 0.44 0.67 -1.43 -1.95 0.04 -2.96 0.92 0.73 0.55 1.08 -1.78 0.2 0.5 0.62 -0.24 0.43 -0.19 -0.69 -0.69 -0.6 0.02 -1.85 -1.52 -1.87 -0.29
Bra039113 (CA1)
 -1.82 0.17 -0.23 0.58 -1.36 -1.28 0.26 0.96 -0.33 -0.9 0.64 -1.33 0.98 -1.11 -1.08 1.04 -0.75 -0.03 1.12 0.98 0.1 0.7 -1.82 -0.11 -0.14 -0.04 0.7 -1.34 -1.57 -2.07 -0.04
Bra040520 (CA1)
 -2.68 -0.47 -2.34 0.26 -2.51 -1.77 1.01 1.31 -0.98 -1.21 0.68 -1.61 1.64 -1.45 -1.74 1.82 -1.27 0.13 1.08 0.49 0.45 0.25 -2.3 -0.25 -0.19 -0.01 0.26 -1.0 -1.57 -2.8 -0.12

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.