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Heatmap: Cluster_84 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.7 0.35 0.98 0.57 2.88 1.76 -0.13 -2.77 - -0.38 -2.57 -1.45 -0.39 -0.37 0.2 -1.32 1.74 1.44 - -0.21 - 0.31 -0.29 - -1.02 - - - - - -
- - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra002085 (RLP6)
 -1.17 0.02 -0.5 -0.1 2.53 2.06 -2.15 -1.31 -4.28 -1.58 -0.08 - -2.64 0.19 0.79 -1.86 - -0.67 -2.64 -2.72 -1.33 0.63 2.33 -2.07 -4.07 -2.64 0.28 -1.48 -0.35 0.36 -0.59
Bra002591 (NRPB7)
 - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
1.72 1.25 -1.47 0.55 2.55 2.83 - -1.34 - -1.42 -1.41 -0.94 - -1.18 - -1.0 - - 0.12 -1.21 -1.25 - 1.89 - -0.99 - - 0.47 - -1.35 -
Bra003422 (ZAT9)
 0.01 -0.6 0.92 0.7 1.3 1.36 -0.22 -1.02 -0.12 -0.89 -0.51 -0.25 -0.53 -0.19 -0.87 -0.32 -0.44 0.39 -0.19 -0.21 -1.52 -3.34 -1.62 0.31 1.14 -1.51 -0.0 0.71 0.51 -0.69 -1.03
- - 2.27 - 1.32 2.64 - - - - 0.4 - - 0.48 - - - 0.6 - - - - 0.44 - 2.69 - 1.34 0.56 0.5 - -
Bra004183 (PXMT1)
 -4.17 -3.21 -2.4 - 2.4 2.67 0.49 -1.59 1.5 0.03 0.16 0.64 0.51 -3.47 -3.38 1.1 -2.14 -2.02 -1.12 1.54 -0.2 0.91 -2.59 - - - - - -4.38 - -2.37
- - - - 3.96 2.89 - - - - - - - - - - - - - - - - 3.01 - - - - - - - -
Bra004778 (LDW1)
 0.58 0.56 0.85 0.85 0.96 1.09 0.77 -0.1 -1.37 -0.81 -0.8 -1.02 0.39 -0.31 0.07 0.22 -0.68 -1.07 0.11 -1.09 -0.77 -0.48 -0.73 -0.11 0.02 -0.19 -0.05 -0.4 -0.39 -0.61 -0.21
- - - - - 3.49 - 0.87 0.82 - 1.79 - - 1.33 - 1.14 - 0.88 1.14 1.06 - 0.89 - - - - - - - - -
0.24 0.1 1.26 1.36 1.92 1.76 -0.22 - - - - - - - - - - - - - - - 0.77 1.22 1.4 0.18 0.51 0.44 0.57 0.63 1.07
- - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
- 1.15 - - 3.3 3.22 0.36 0.54 - - - - - - - - 1.56 - - - - - 0.98 - - - - - 0.99 - -
Bra011748 (CPK25)
 - - - - 3.45 4.33 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra012107 (CEP5)
 - 2.28 2.92 - 0.74 4.08 - - - - - - - - - - - - - - - - - - - - - - - - -
- - 1.86 - - 2.84 - - - - - - 0.63 0.79 -0.67 - - - - - - - 2.51 - 2.41 - - 0.81 0.04 0.57 0.04
Bra012674 (RAB2A)
 - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra013827 (PCH2)
 -1.27 -1.92 -0.16 -1.16 -0.56 2.21 -1.2 -2.52 0.93 -0.0 -0.2 -0.18 1.95 -2.75 0.96 -0.09 -0.92 1.18 -0.03 -2.29 -1.73 0.5 1.06 -1.32 -0.39 -1.06 -2.11 -0.78 -2.18 -0.89 -0.91
Bra014058 (HON4)
 - - - - - 3.57 - - - - - - - - - - - - - - - - 4.26 - - - - - - - -
Bra014146 (CDC48)
 1.55 -0.81 -0.86 - 3.44 3.74 - - 0.11 - - - - - - - - - 0.18 - - - - - - - - -0.86 - - -
Bra014590 (HCF106)
 - - -1.51 1.89 2.23 3.18 -1.35 -1.27 -1.39 - - - 0.63 -0.88 -0.92 - -1.13 0.73 - - - - 0.85 - 1.4 - - - -1.08 - 1.21
Bra014643 (BG3)
 - 1.82 3.12 0.09 3.06 1.35 -3.56 -3.87 -3.31 -1.83 -3.84 -1.8 - -3.67 - -1.52 1.52 -4.91 -2.74 -4.36 0.62 -1.83 -4.98 -2.32 -3.42 - -5.01 -3.71 -4.29 -3.9 -
Bra014749 (OVA1)
 - 1.09 - 1.03 3.05 3.12 - - 1.47 - - - - - 0.89 2.39 - - - - - - - - - - - - - - -
- - 2.61 0.59 2.75 2.26 - 0.85 - -5.69 0.75 - 1.32 - - - 1.36 1.73 - - - - - - - - - - - - -
Bra015113 (GS2)
 - - - - 3.15 2.69 - -1.19 0.52 - - 2.31 - - 0.32 - - -0.93 - 0.92 -1.12 - 0.84 - - - - - -0.98 - 1.28
- - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra015159 (AtFDR2)
 - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra017399 (EMB3136)
 0.91 -0.72 2.17 1.18 3.07 1.06 -0.57 0.2 - -0.47 - -1.62 -0.31 -1.6 -3.61 1.04 - -2.13 -1.97 - - -1.75 -1.29 -0.87 -1.74 -2.28 -0.37 -1.18 -0.65 -0.16 -2.75
Bra017446 (ZCE1)
 0.77 -5.02 -4.56 -6.05 3.34 2.82 -2.87 -6.51 -1.49 -4.4 -3.03 -1.76 -1.65 0.28 1.21 -2.23 -2.92 0.6 1.36 -2.67 -1.02 -1.31 0.58 - - - - -5.16 - - -2.11
- - - 1.89 2.73 2.43 -0.25 - - - -0.04 - - 0.23 - - - 2.82 1.25 - - 1.49 - - - - - - - - -
- - - - - 4.55 - - - - - 1.38 - - - - - - 1.91 - - - - - - - -0.85 - - - -0.67
Bra018075 (FL6)
 - - - - 3.34 4.39 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra018210 (ACT12)
 1.13 2.08 1.52 2.58 2.15 3.42 -0.88 - - - -6.43 - - - -5.87 - - - - - - - - - - - - - - - -
- - - - - 4.0 - - - - - - - - - - - - - - - 3.91 - - - - - - - - -
Bra020680 (CRK26)
 - - - - - 4.23 - - - - - - - - - - - 3.62 - - - - - - - - - - - - -
-1.24 -2.26 - - 0.79 2.02 0.11 - 0.18 -0.67 -1.26 0.6 0.5 1.1 -0.84 0.99 -0.49 1.21 0.53 -0.05 0.61 -2.69 2.51 - - - - -1.47 - -2.58 -1.49
Bra021243 (MGP4)
 - - - - - 2.53 -1.85 -1.77 0.44 -1.74 -1.95 1.15 - - 1.88 0.22 1.58 1.2 2.69 - - -0.51 - - -0.62 - - 0.72 -1.63 -21.47 -0.68
0.74 1.0 0.43 -0.59 0.68 3.08 0.32 -0.34 0.53 0.01 - - - 1.05 0.35 - - - 0.22 -0.23 -0.95 0.0 - -1.96 -0.32 - -1.89 -0.78 -1.79 -0.89 0.19
- - - - - 4.51 - - - - - - - - - - - - - - - - 3.05 - - - - - - - -
2.23 - - - 1.82 3.69 - - - - - - - - - - - - 2.92 - - - - 1.2 - - - - - - -
Bra021718 (PARG2)
 0.78 1.89 -0.77 1.67 3.22 3.02 - - - - - - - - - - - -2.75 - - - - 2.08 - - - - - - - -
- - 3.73 - - 4.15 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra022134 (UMAMIT7)
 - - 1.36 - - 3.96 - - - 1.4 - -0.92 0.8 - - - - - - 0.69 - -1.09 - 0.92 0.68 - - -0.6 - - 0.78
-1.19 1.68 0.43 0.95 2.08 3.56 -3.49 -3.46 - -2.34 -3.26 -1.64 -0.86 0.65 -1.09 -0.36 -1.85 - 1.0 -0.87 -4.22 -0.41 - -4.27 - - - - -4.13 -2.61 -
Bra023102 (PIP2B)
 0.31 0.36 0.99 1.13 0.88 1.57 0.31 -1.93 -0.81 -1.09 -0.65 -1.31 -0.84 0.14 -0.22 -0.69 -1.06 -1.64 -1.05 -0.85 -0.46 -0.94 -1.49 0.63 0.55 0.18 0.32 0.04 0.54 -0.92 -0.14
-1.45 -3.08 0.27 -1.32 1.22 2.45 -1.59 -1.31 0.86 -0.27 0.41 -0.19 -2.31 -0.68 1.01 1.11 0.52 -1.44 1.51 -1.39 -2.48 1.18 - -3.59 -0.92 -1.25 -0.37 - -2.29 -0.97 -0.88
Bra024103 (HMA3)
 1.16 -0.04 1.75 -1.2 1.77 1.88 -0.99 -2.26 -0.54 -0.65 -0.64 -0.77 -1.31 -0.69 0.61 -1.24 -0.93 -1.33 -1.43 -0.95 -0.96 0.07 -0.24 0.18 0.22 -0.37 -0.35 -0.05 0.06 -1.24 -2.63
Bra025299 (PGA37)
 - - - - 2.86 2.64 - - - - - - - - 1.56 - 1.16 - - - - - - - - - 2.27 - 1.32 - 2.33
- - - - 3.51 4.29 - - - - - - - - - - - - - - - - - - - - - - - - -
0.1 - 3.11 - 1.18 3.05 0.38 - - - -0.47 - - - 0.92 0.81 - -0.13 0.78 - - - - - - - 0.6 - -0.15 - -
2.07 - - - 3.39 2.16 - - - 1.57 - - - - - 1.9 - - - - - - - - - - - - 1.78 0.74 -
- - 1.49 1.56 3.27 2.77 - - - - - -0.82 0.1 0.12 2.14 - - - - - - - -0.81 - - - - - - - 0.09
Bra026817 (PTR2)
 - - - - 4.06 3.84 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra026989 (MEI1)
 - 1.77 3.39 1.14 2.16 2.01 -4.66 -5.29 - -34.66 - -31.52 - -4.3 - -14.66 0.71 - -34.8 -19.24 1.02 - -2.3 -2.56 -1.72 -1.95 -1.52 -1.53 -1.11 -1.47 -2.35
Bra027399 (NFA4)
 - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra027447 (OKI1)
 - - - - - 4.19 - - - - - - - - - - - - - - - - - - - 3.67 - - - - -
- - - - 4.04 3.87 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra028283 (AGL71)
 - - - - - 3.22 0.31 1.31 - - 0.27 0.37 0.73 1.8 1.77 - 1.53 - 1.39 - - - - - - - 0.46 - - - -
Bra029011 (ILR3)
 0.29 0.18 0.13 0.36 0.48 0.69 0.34 -0.3 -0.05 -0.59 -0.17 -0.23 -0.19 -0.08 0.28 -0.17 0.0 -0.5 -0.23 0.16 -0.76 -0.29 -0.96 0.17 0.18 0.14 0.05 0.2 0.27 -0.63 -0.15
0.65 - - - 2.93 2.53 -0.87 - - - -0.69 -0.48 - - 1.03 - - - - - 1.91 - 2.45 - - - - - -0.45 - 1.11
Bra030200 (HAT9)
 0.46 0.39 0.26 0.29 0.51 1.3 0.1 0.03 -0.23 -0.42 0.0 -0.63 -0.1 -1.13 -0.59 -0.18 0.01 -1.66 -0.78 0.02 0.1 -0.15 -0.94 -0.21 -0.1 0.45 -0.03 0.04 0.43 -0.5 0.1
- - - - 3.45 3.25 - - - 2.33 - - - - - - - - 1.45 - - - - - - - - 1.47 - - -
- - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra030428 (SVL4)
 - - 2.23 2.94 2.97 3.43 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra033178 (Nog1-2)
 - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
1.81 1.73 2.32 1.83 1.44 3.27 -2.72 - - - -3.77 - -3.28 - -1.76 - - - -2.04 - - - -1.48 -0.75 -3.26 -3.2 -1.41 -2.44 -1.82 -3.53 -1.77
Bra033771 (RLT2)
 - - 0.83 - - 2.46 - 0.38 - - - - 1.73 - - - - - - - - - 4.26 - - - - - - - -
Bra033910 (CPK9)
 -0.47 -0.77 0.96 -3.19 2.1 2.55 -2.65 - -0.97 -0.22 -1.3 -3.58 -3.42 -0.45 0.61 -1.58 - -0.17 1.36 -1.19 -2.3 -1.0 1.95 - 0.43 - 0.64 -0.55 -1.99 -3.03 -1.4
Bra035032 (GOX1)
 - - 3.36 - - 4.37 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra035208 (SVL1)
 - - - - 3.19 2.98 - - - - - - - - 2.24 - - - - - - - - 2.04 2.34 - - - - -22.49 -
-2.28 -1.71 -1.37 -1.84 2.24 2.12 -1.4 -1.77 -3.04 -0.5 -0.82 -1.72 -0.31 -0.84 0.29 0.48 0.42 1.1 -0.39 -0.19 0.03 0.3 0.59 -0.01 0.03 -1.46 -1.0 -0.33 -1.91 -1.13 0.18
Bra036034 (WIH3)
 - - - - 3.12 2.66 - - - - 2.63 2.26 - - - - - - - - - 2.31 - - - - - - - - -
Bra036381 (HTB10)
 - 2.04 2.21 - 3.28 - -0.84 - 1.51 - - 0.04 - - - -0.42 -0.49 - -0.77 - - 1.31 - - - - - - 1.5 -0.61 -2.9
Bra037115 (ARA12)
 0.36 -0.27 0.15 -0.9 0.3 1.46 -0.26 -0.44 0.95 0.7 0.84 -0.22 -1.01 0.76 -1.06 0.05 0.43 -1.09 -0.31 -0.36 0.43 1.8 -3.33 -1.05 -0.95 -1.55 -0.76 -1.0 -1.45 -1.17 -2.42
Bra037332 (RHB1A)
 1.15 0.5 1.01 0.34 0.6 1.3 -0.26 0.1 -1.15 -1.5 -0.52 -1.13 -0.63 1.11 0.61 -0.26 0.58 -0.09 0.13 -0.53 0.53 -2.42 -0.89 -1.14 -0.39 -0.35 -0.2 -1.19 -1.83 -0.7 -1.05
Bra037333 (RHB1A)
 0.83 0.84 1.13 0.14 0.74 1.24 0.58 -0.36 -1.39 -1.74 0.19 -1.01 -0.37 0.98 0.16 -0.6 -0.51 -0.1 -0.71 0.73 0.48 -2.06 -1.03 -0.6 -1.05 -1.03 -0.21 -0.38 -0.36 -1.57 -0.76
Bra037345 (MSH7)
 0.88 1.75 1.76 1.2 1.64 1.64 0.49 -3.82 -4.32 -4.72 -3.53 -1.19 -2.93 -2.12 -1.59 -2.63 -2.14 -2.23 -2.87 -2.73 -2.07 -3.67 0.14 0.15 0.4 -0.52 -0.11 0.07 0.49 -0.33 0.54
Bra038198 (YSL7)
 - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - -
- - 2.58 - 2.14 3.63 - - - - - - - - - - - - - - - - 1.42 - 0.67 - - -1.4 0.17 1.08 -1.43
- - - - 2.72 1.21 - - - - - - 1.82 - - - 2.09 1.17 - - 0.7 - 3.26 - - - - - - -0.25 -
- 1.12 2.26 0.49 2.17 2.19 0.93 - - - - -1.04 - - - -0.74 - - -0.77 - - -0.92 1.44 - 2.19 0.1 -0.95 - - - -0.78
Bra039343 (Nog1-1)
 - - - - - 4.53 - - - - - - - - - - - - - - - - 2.98 - - - - - - - -
- - - - - 3.95 - - - - - - - - - - - - - - - - - - - 3.96 - - - - -
Bra039564 (FRS4)
 1.9 1.77 1.16 1.72 1.74 2.91 0.07 - - - - - - - 0.67 - 0.45 0.73 -0.02 - - -0.29 - - - - - - - - -
1.44 1.78 1.88 -0.22 1.82 2.75 -0.74 - -5.48 - - - -0.99 - 0.42 - -0.01 0.3 -0.66 - -0.21 0.12 -3.8 -2.64 -2.09 -5.43 -2.1 -0.81 -1.77 -0.75 -0.75
- - - - - 4.65 - - - - - - - 2.54 - - - - - - - - - - - - - - - - -
- - - - - 3.94 - - - - - - - - - - - - - - - - 3.97 - - - - - - - -
0.18 0.0 -0.13 0.01 0.62 0.6 0.03 0.05 0.02 -0.3 -0.15 -0.22 -0.17 -0.02 -0.03 -0.05 -0.0 -1.87 -0.17 0.29 0.07 -0.06 -0.73 0.02 0.08 -0.03 0.02 0.3 0.42 -0.28 -0.03
Bra040901 (AtDOA16)
 - - - - 1.94 2.92 0.72 - - - 2.87 1.0 - - - - - 0.91 2.75 - - - - - - - - - - - -
Bra041083 (ZFN3)
 1.81 - - - 3.22 2.4 - -0.71 1.28 - - 1.35 - 0.79 - - - 0.39 - 2.11 - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.