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Heatmap: Cluster_92 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - - - - - - - - - - - - - - - - - 3.94 - - 3.97 - - - - - - - -
Bra000462 (NF-YB5)
 - - - - 1.62 - - - - - - - 2.37 0.92 - 1.78 - 1.82 - 2.65 - - - - - 2.12 - 0.68 0.74 - -
Bra003286 (ADPG1)
 - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - - - - - 2.19 - - - - - - - - - - 4.42 - - 2.35 - - - - - - - -
-0.64 -2.02 -1.67 -1.44 0.14 0.8 -0.17 0.11 0.71 -0.09 -0.17 0.36 0.75 0.84 1.2 0.38 0.68 0.52 -0.11 0.59 0.11 -0.54 -1.17 -0.53 -0.58 -1.03 -0.47 -0.11 -0.59 -0.83 -1.31
1.24 0.85 -2.47 0.07 -3.95 -0.89 - 1.42 1.42 -6.82 1.67 -1.75 -1.03 2.75 -1.32 -4.98 -2.73 0.66 -4.26 2.0 -4.47 1.42 - - - - - - - - -
Bra005461 (ATL99)
 - - - - - - - - - - - - - - - - - - - 3.13 1.67 - 3.57 - 2.37 - - - 1.01 - -
- - - - 1.61 - - - - - - 1.51 - - - - - - 2.98 4.11 - - - - - - - - - - -
Bra005649 (TRX z)
 - - - -2.48 - - - -2.67 0.59 - 1.88 1.67 - 0.45 2.16 - 1.38 - 1.28 2.99 -4.88 1.72 -2.84 - - - - - - - -4.96
Bra005916 (PGIP2)
 -0.95 -1.06 - -3.78 -0.26 -0.82 -1.94 -3.87 1.06 1.07 0.94 0.04 -2.0 1.23 1.2 0.11 0.99 - 0.85 0.31 1.58 -1.64 -4.77 0.07 -1.44 -1.33 -0.74 -0.73 -0.62 -0.03 1.04
Bra007493 (GDI2)
 - - - - 0.56 -1.41 - -1.86 1.49 1.12 -0.2 -0.22 -0.79 1.9 2.01 1.96 0.7 -0.67 0.02 -0.62 -0.68 0.93 0.2 -0.32 -1.95 - -2.01 -2.63 -1.18 - -1.19
Bra007884 (WRKY36)
 0.97 -0.5 1.04 0.02 0.59 0.0 -0.57 -0.11 -0.97 -0.45 -0.23 0.11 -1.41 -0.83 -2.1 -2.35 -0.6 -0.58 -0.17 0.68 -0.63 1.04 -0.49 -0.41 0.52 -0.71 0.22 0.39 0.97 -0.49 0.52
- 1.29 - - - - - - - - - - - - - 1.25 - - - 3.95 - - 1.15 - - - 2.12 2.06 - - -
- - - - - - - - - - - - 2.87 - - - - 1.65 - 2.76 - - 3.58 - - - - - - - 0.85
Bra008390 (RER1)
 - - - - - - - - 2.6 - - - - 2.26 - - - - - 3.59 1.38 2.46 - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.05 - 3.85 - - - - - - - - -
Bra008596 (MYB9)
 - - - - - - - - - - - - - - - - - - - 3.35 - - 4.38 - - - - - - - -
- - - - 1.1 - -0.67 - - - - 1.35 2.47 - -0.26 1.31 0.57 - -0.41 1.83 1.37 - 1.79 - 1.07 - - 0.56 - -0.53 -0.51
- - - 0.35 2.1 - -0.04 - - 1.7 - 1.22 - - 0.45 0.44 1.8 - - 2.22 - - 1.23 0.12 - - - - 1.8 - 0.17
Bra009535 (SAUR44)
 - - - - - - - - - - - - 3.06 - - - - - - 2.92 - - 2.33 1.18 2.28 1.56 - - - - -
Bra009926 (GATA23)
 -0.35 0.69 - - 1.07 0.31 - - - 0.86 1.32 - 0.44 1.34 - 1.16 - 2.49 - 2.22 - 1.95 - - - - - - -0.5 - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - - - - - - - - - 4.04 - - - - - - 3.86 - - - - - - - - - - -
Bra010676 (CYP96A11)
 - - - - - - - - 2.21 - - - - - - - - - - 4.72 - - - - - - - - - - -
Bra010868 (ILL3)
 -5.69 - -3.74 -4.5 -2.98 0.89 0.15 -0.78 0.04 0.59 0.47 0.87 -1.22 1.04 2.45 0.03 1.43 -5.02 0.27 1.52 1.86 1.03 - - - - - - - - -
Bra012128 (HEC1)
 - - -1.48 0.21 0.9 - 0.57 -1.9 - - - -0.37 1.44 - -0.36 0.08 -0.63 0.27 - 1.91 0.3 0.44 2.01 1.0 0.41 - -1.58 0.44 - 0.68 0.76
- - - 3.95 - - - - - - - - - - - - - - - 3.96 - - - - - - - - - - -
Bra012886 (CASPL5C2)
 - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
1.33 0.43 -0.45 0.36 0.18 1.1 -0.72 0.5 -1.12 -4.04 -2.95 -1.56 0.09 -0.44 -1.12 -2.94 -1.18 -3.45 -0.82 1.75 -0.3 1.13 -1.16 0.06 -0.62 0.87 0.22 -0.6 0.04 0.36 -0.18
Bra013491 (CPK34)
 -1.44 - -4.41 -2.51 -2.39 0.72 0.52 - 0.85 0.42 0.31 -0.34 0.58 1.84 1.81 - 1.26 -2.65 0.26 2.53 1.34 0.28 - - - - - - -3.5 - -6.11
Bra013699 (AtFDB36)
 - -0.11 0.96 - -0.51 - - - 1.62 0.54 -0.58 - 1.28 1.85 1.73 -0.29 1.96 -0.24 1.44 -0.4 1.16 - - - - - - - - -0.37 -0.28
-2.04 - -3.56 - -0.76 -1.48 0.13 -1.49 0.65 0.2 0.07 0.75 -0.16 0.54 1.03 1.26 0.54 -0.13 0.34 0.68 -0.98 0.09 -0.34 0.48 0.26 0.57 0.39 0.45 -0.22 -0.89 -1.77
Bra013917 (GDU2)
 -3.16 -2.2 -1.2 0.65 0.87 0.09 -0.4 -0.46 -3.91 1.01 0.67 0.18 1.07 1.1 1.7 -4.64 1.07 0.54 -3.3 1.86 -0.86 1.25 -0.47 -3.92 -3.14 -3.05 -3.28 -3.18 -3.46 -2.14 -2.58
Bra015121 (GC1)
 -2.58 -0.99 -1.2 -1.39 0.7 -2.24 -1.02 -2.24 0.43 0.97 1.21 0.23 1.66 0.36 1.03 -0.42 1.32 1.65 0.94 1.93 -0.59 -0.69 -2.77 - - - - - -3.7 - -3.67
Bra015248 (MTV9)
 - - - - - - - - - - - - - - 3.53 - - - - 4.28 - - - - - - - - - - -
1.36 - - 2.02 - - 2.61 - - - - - - - - - - - - 3.26 1.24 2.66 - - - - - - - - -
- - - - - - - - - 1.92 1.81 - 1.63 - - - 1.48 - 2.77 2.79 - -8.53 1.4 - - - - - - - 0.51
Bra016966 (PI4K GAMMA 1)
 - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - 2.01 0.97 - - - 0.87 0.77 - - 2.89 - - - - 1.79 2.7 2.04 - - - - - - - - - -
Bra017794 (MTV9)
 - - - - - - - - - - - - - - 3.53 - - - - 4.28 - - - - - - - - - - -
Bra018507 (MED21)
 -0.07 0.17 0.27 -0.54 -0.49 0.76 -0.14 -0.31 0.49 0.33 -0.05 0.04 -0.12 0.5 0.96 -0.02 0.37 -0.42 0.02 0.16 0.43 0.14 -0.93 -0.01 -0.27 -0.81 -0.64 -0.68 -0.38 -0.93 -0.16
Bra019279 (TSO2)
 -3.81 -3.78 - - -3.83 0.77 0.61 0.53 1.38 1.02 0.36 -0.76 0.26 2.46 1.15 -0.78 0.58 0.95 -0.13 1.68 0.9 -0.93 -2.72 - - - - - - - -
Bra019630 (RBSK)
 - - - - - - - - - - - - 2.47 - - - - 2.6 - 3.69 - 2.69 - - - - - - - - -
Bra020272 (GAF1)
 -0.18 0.17 -0.59 -0.31 0.08 1.19 0.42 -0.07 -0.02 -0.18 -0.31 -0.38 -0.6 0.91 1.24 -0.43 0.07 0.24 -0.22 0.6 0.27 0.27 0.69 -1.0 -1.47 -1.42 -0.73 -1.11 -0.79 -0.85 -0.38
Bra020391 (TIL)
 -1.93 1.16 -1.94 -2.21 -3.35 -2.95 -0.02 -3.66 1.05 -5.68 -0.37 1.05 1.57 1.19 -0.7 1.18 1.88 0.67 1.37 1.34 1.58 -2.25 -4.72 -5.79 - - - - - -5.62 -
Bra022047 (NHL3)
 0.07 0.42 -0.13 -2.9 -0.46 0.78 -0.85 0.92 0.04 0.5 0.1 0.56 0.22 0.59 0.54 0.11 0.21 -1.24 0.63 0.57 0.53 -0.15 0.49 -1.04 -1.11 -1.44 -0.46 -1.12 -0.91 -0.82 -0.92
Bra022152 (AACT1)
 - - - - - 1.32 0.46 - -1.37 - - - - 2.27 0.88 -0.92 0.92 1.07 1.28 2.45 -1.17 1.88 0.81 - - - 0.45 - - -1.28 -
- - - - - - 3.4 - - - - - - - - - - - - 4.35 - - - - - - - - - - -
- - - - - 1.29 - - - - - - 0.45 - 3.75 0.48 - 0.21 0.21 3.15 0.2 - - - - - - - - - -
Bra023642 (AtFDB32)
 - - - - - - -0.75 - 0.38 - - - 1.65 0.83 - - - -0.26 - 3.0 - - 1.5 0.51 - - - 1.73 1.98 1.59 -0.35
- - - - - - 0.12 -0.64 0.82 -0.6 0.96 -0.69 0.65 0.73 0.7 1.19 -0.53 - - 2.93 1.44 - - -0.68 - - -0.61 - 0.46 0.5 1.03
- - - - - - - - 2.57 1.04 - - 2.86 - - - - - 1.26 3.47 - - 1.18 - - - - - - - -
Bra024682 (MPSR1)
 - - - - 0.66 - - - - - - - - - 3.22 2.02 - - - 3.58 - - 2.02 - - - - - - - -
- - - 2.05 - - - - - - - - - - - - - - - 4.55 - - - - - - - - - 1.8 -
Bra025118 (UPS1)
 - - - -2.67 -3.15 - -4.37 -0.93 1.96 -2.57 -3.29 -1.51 3.01 0.1 0.37 - - 1.8 -4.19 3.52 - -4.11 -4.04 - - - - - -3.98 - -
Bra025217 (LBD23)
 - - - - - - - - 0.35 - 1.83 - 1.84 - 2.06 1.68 - - - 2.23 2.53 - - - 2.25 - - - - - -
Bra025947 (TIP3.2)
 -2.02 -2.0 -2.09 - -1.84 -1.41 -0.5 0.95 1.42 1.15 1.42 0.06 -0.52 1.3 1.32 0.89 0.61 0.06 0.92 1.48 -0.79 1.01 - -3.14 - -4.72 - - -2.97 -1.48 -1.57
Bra026264 (UDG4)
 - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
Bra026839 (SAC52)
 -0.81 -1.01 -6.72 -0.65 -4.31 1.71 1.15 -0.08 0.67 0.87 -0.02 0.15 -2.2 0.99 1.66 -1.79 -0.03 0.12 -0.02 1.78 0.85 1.05 -0.37 -6.44 -5.25 -3.53 -4.71 -5.23 -6.33 -3.19 -2.39
-2.75 -1.1 -0.2 -2.65 2.19 1.07 0.28 -3.22 -2.11 -0.15 -0.68 -0.51 -1.31 -0.16 -0.43 0.15 -0.94 0.47 -0.37 2.21 -2.17 -2.07 1.51 -0.0 -1.93 -3.06 0.41 -0.5 -0.62 -1.94 -0.31
1.11 -0.18 - 0.61 -0.66 - 0.48 -0.55 -0.52 0.9 - -0.66 1.55 - - 0.17 - 0.7 -0.7 2.33 -1.44 - -0.04 - - 1.17 0.37 -1.38 -0.93 0.45 1.02
Bra029154 (AGL71)
 - - -2.75 - 0.23 -1.46 -1.66 -3.04 0.01 -0.43 1.24 -2.98 -1.18 1.7 2.13 1.89 -0.94 - 1.23 1.44 -0.97 0.1 -2.0 0.55 0.96 -0.47 -0.63 -1.77 -1.31 - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - -2.38 -0.61 -1.61 1.13 1.82 1.86 1.66 -1.6 -0.78 0.1 - - 1.89 1.78 1.66 0.11 1.17 - - - -1.51 -1.57 - -2.29 -0.73 -2.35 -
Bra031005 (TIP3.2)
 1.6 0.67 - - - - - - 1.38 - 1.09 0.65 - 2.61 - - 0.39 - - 3.33 - - 0.35 - - - - - - 0.44 -
- - - - - - - - - - - - 3.08 - - - - 2.83 - 2.96 - - - - 2.93 - - - - - -
- - - - 4.0 - - - - - - - - - - - - - - 3.9 - - - - - - - - - - -
Bra032179 (UGT84B2)
 - 0.15 1.29 - 0.75 -0.3 -1.42 0.59 -0.45 1.06 1.21 0.33 - 0.57 0.57 -1.09 0.43 - 0.96 1.6 -0.22 -0.35 1.34 - -1.23 -1.25 - - -1.07 - 0.51
Bra032439 (ADS1)
 - - - - - - - -1.21 - - 0.15 - 1.82 - - - - 3.03 0.4 3.22 -0.44 - 2.06 - - - -0.1 - 0.38 - -
Bra032562 (AtFDB6)
 -0.17 - - 0.42 -0.51 1.56 -0.73 - 0.97 1.24 -0.18 -0.21 - -1.47 1.02 1.46 -0.46 - 2.09 - 1.93 - 0.45 - - - - -1.34 0.2 - 0.68
Bra032736 (SAUR25)
 0.07 - 0.52 0.1 2.19 -0.13 - - - - - - - 2.14 - - 0.93 - - 3.16 - - 2.74 - - - - - - - -
- - - - - 2.35 - - - - - - - - 2.8 - - - - 3.66 - - - - - - - 2.65 - - -
- -1.11 0.1 - -0.86 -1.2 -0.09 -1.01 0.37 1.13 1.09 -0.01 0.92 0.02 -0.47 1.43 -0.56 0.42 0.07 0.65 0.99 -1.27 -3.43 0.09 -0.25 -0.9 -1.43 -0.82 0.15 0.11 0.51
- - - - - - - - - - - - - - - - - 2.97 - 4.09 - - - - - - - - 1.58 - 1.64
Bra033907 (AGC1-9)
 - - - - - - - - - - - - - - - - - - - 3.6 - 3.39 1.02 - - - 2.11 - 1.01 - -
Bra034473 (SLAH1)
 - - - - - - - - - - - - - - -16.94 - - - - 4.95 - - - - - - - - - - -
Bra035750 (FIE)
 -2.47 -3.0 - - -0.97 -2.31 -1.58 1.11 2.27 0.66 0.92 0.7 -1.36 2.28 1.87 0.58 -1.88 -0.68 -1.1 1.74 -2.19 0.06 -3.07 - -2.78 -2.49 -4.38 -3.61 -2.29 -1.45 -3.7
Bra035818 (CYP705A19)
 - - - - -1.1 - -3.21 - - - - - 3.75 - - - - 2.45 - 3.1 - - 1.5 -3.21 - - - - - - -
Bra035921 (MSH4)
 - 1.12 -1.37 -0.3 - -22.39 - 0.61 -22.65 -1.09 -6.23 0.4 2.49 1.27 - -4.08 1.75 -3.08 -2.44 1.81 - 0.86 -1.38 - -0.11 - -2.92 -0.22 1.36 0.73 -0.5
Bra035934 (ERU)
 - - 0.94 - 2.63 - - - - -0.01 - - 0.24 - - 0.82 0.26 0.68 - 3.01 0.11 - 2.68 - - - - - -0.79 - -
Bra036053 (SUMM2)
 0.35 0.07 -0.29 -0.49 0.11 -0.15 -0.16 0.3 0.73 0.46 -0.07 0.55 -0.07 0.47 0.83 0.23 0.62 -0.03 -0.11 0.28 0.36 0.07 0.39 -2.11 -0.57 -0.82 -1.22 -1.13 -1.01 -1.33 -0.44
Bra036515 (CID13)
 - - - - - - - 2.22 - - - - - 2.69 - - - - - 3.41 - 3.22 - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 3.59 - - 3.62 - - - - - - - 2.74
Bra036706 (SDRd)
 - - - - - - - - 1.1 1.01 - - - 2.69 - - - - - 3.37 0.9 1.01 2.04 - 1.04 - - - - - -
Bra036789 (LTP12)
 - - - 2.42 - - - - - - - - - - - - 2.81 - 2.42 3.73 - - - - - - - - - - -
Bra036799 (BURNOUT1)
 0.32 0.3 0.53 -1.31 -0.38 -0.16 -0.1 0.78 -0.53 0.87 0.33 -0.62 -0.63 -2.04 -1.34 0.01 -1.24 0.06 -0.5 1.06 -0.13 0.38 0.32 0.36 0.55 -1.33 0.31 -1.7 0.34 -0.3 0.19
Bra036855 (AP-3 alpha)
 - - - - - - - 0.62 1.03 0.5 - - - - 1.58 -0.88 - 2.21 2.02 2.63 2.42 1.17 - - - - - - - - -
-2.44 -1.57 -2.55 -3.91 0.54 -0.06 -0.05 -2.24 0.51 -0.13 0.17 -0.05 -1.71 1.28 1.62 1.6 0.57 -2.01 -0.32 0.19 0.62 0.94 -1.13 -0.1 -0.32 -0.68 -0.17 -0.55 -0.23 -0.88 -1.1
2.28 - - - - 0.37 - - - - - - 0.55 - - - - - - 2.73 - - 3.83 0.22 - - - - - - 0.5
Bra037106 (MINI3)
 - - - - - - - 2.73 - - - - - - - - - - - 4.1 - - - 1.65 - - - - - - 2.02
0.57 -0.9 -1.09 -1.39 0.45 -1.22 -0.49 -1.8 1.5 1.02 1.1 0.21 -1.26 1.33 1.02 0.81 -0.1 -0.62 0.43 0.97 0.13 -0.16 -1.38 -1.3 -1.27 -0.86 -0.84 -1.6 -1.48 -1.72 -1.8
- - - - 0.76 3.02 - 1.69 - - - - 2.65 - - - - 0.83 - 2.55 0.92 - - - - - - - - 1.1 -
- - - - - 1.89 - - - - - - - - - 3.13 - - 2.71 3.59 - - - - - - - - - - -
- - - - - 3.77 - - - - - - 4.12 - - - - - - - - - - - - - - - - - -
Bra038531 (MED18)
 - - 0.07 2.05 - 0.55 -0.67 1.05 - -0.48 - - 1.95 - 2.45 - - 1.33 -0.23 2.19 - - -0.23 - - - - - -0.12 - 0.94
Bra038862 (UGT72E1)
 - - - - - - - - - 1.68 - - 1.89 - - - - - - 2.79 - 2.68 0.78 - - - - - - 3.18 -
Bra039077 (UKL5)
 -1.71 0.25 0.14 -0.39 -0.2 0.34 0.22 0.02 1.32 0.63 1.02 0.17 0.53 0.94 1.52 -0.55 0.87 -1.44 0.96 1.33 0.36 -0.35 -2.65 -5.57 -5.17 - -3.72 -5.21 - -3.32 -3.62
Bra039410 (NOT11)
 - - - - 3.48 - - - - - - - - - - - - - - 4.31 - - - - - - - - - - -
Bra039961 (ARF10)
 -0.31 0.1 0.51 -0.32 0.68 0.94 -0.54 0.29 -0.02 -1.33 -0.17 0.11 1.18 -0.25 0.52 -0.32 -0.25 0.53 -0.37 0.31 -0.21 0.51 0.31 -0.73 -0.05 -1.27 -1.19 -0.83 -0.92 -1.27 0.02
Bra040365 (STUbL3)
 - 1.31 0.61 1.57 -1.79 -0.21 - 0.61 -0.96 - 0.95 - 0.93 0.51 - -1.57 - 1.67 - 1.49 0.44 1.47 -0.67 0.79 -1.54 - - - - 0.96 -1.11
Bra040486 (NST1)
 - - - - 1.35 2.86 - - - - - - 3.77 - - - - - - 2.91 - - - - - - - - - - -
Bra040907 (POK2)
 -1.67 -0.96 -1.11 -2.48 0.98 1.45 0.31 0.18 0.49 -1.64 0.68 1.22 0.14 0.68 0.73 0.84 0.25 0.57 0.72 0.98 0.65 -1.27 -2.19 -1.92 -2.01 -2.45 -2.41 -1.99 -1.18 -2.28 -1.43
Bra041143 (GSTU27)
 - - - - - - - - - - - - - - 1.96 - - - - 3.71 - - - - - 1.64 1.64 2.03 - - 1.87

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.