Heatmap: Cluster_559 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001008 (VIH2)
-0.14 -1.2 -1.08 -0.92 1.49 0.26 -1.15 0.02 -0.66 -0.79 -1.25 -0.47 -1.78 -0.18 0.06 -1.53 -1.52 3.08 0.57 -1.33 -1.46 -1.46 -3.05 -0.96 -1.11 -1.29 -1.28 0.68 0.38 0.29 -0.26
Bra008726 (VIP2)
-0.61 -1.07 -1.1 -1.23 0.53 0.28 -0.24 -0.23 0.36 -0.13 -0.07 0.05 -0.5 0.11 0.21 -0.63 -0.79 2.2 0.03 -0.16 -0.65 -0.17 -1.16 -0.14 -0.13 -0.75 -0.14 0.32 0.38 0.03 -0.15
-2.24 -3.0 -3.49 -1.4 1.08 0.48 -0.66 -0.17 -1.15 -0.72 -1.17 -0.8 -1.14 0.22 -0.56 -0.88 -0.7 3.02 0.64 -0.86 -0.91 -0.84 -0.26 -0.33 -0.74 0.25 -0.9 -0.19 0.13 0.37 0.18

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.