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Heatmap: Cluster_45 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001821 (B ALPHA)
 1.88 - 2.46 -0.3 - - -1.39 -0.92 - 0.95 - - 2.1 - 1.64 0.77 - - - -0.88 1.05 - - - 0.67 - - - 0.59 -1.13 1.52
2.1 - 1.09 - 0.57 0.46 -1.38 - - - -1.31 -0.75 1.1 -0.01 -0.92 - -0.06 -1.2 -0.2 0.51 - - 0.95 -1.21 1.51 0.71 0.44 0.09 0.09 -0.95 1.11
Bra002100 (ASHR1)
 0.74 0.27 0.17 -0.04 0.01 1.51 -0.95 -0.89 -0.25 -0.68 -0.09 -0.66 0.56 0.87 1.24 -0.07 -0.25 -0.0 -1.39 -0.3 -0.68 -1.49 0.9 -0.01 -0.1 -0.87 -1.26 0.17 -0.48 -1.42 -1.06
3.99 - - - - 0.78 - 1.58 - - - - - - - - - - - - - - 0.93 - - 2.34 - - 0.81 - 0.76
Bra002358 (EIL2)
 3.45 - 2.6 - - - - 1.27 - - - - - - - - - - - - - 2.94 1.0 - - 0.98 - - - - -
2.96 1.41 - - - - - - 1.92 - - - 1.38 - 0.57 - - - - - - -0.04 1.15 2.34 1.13 - - - 0.17 - 0.18
Bra002818 (MBP2)
 1.8 -1.45 1.43 -1.37 -0.83 0.47 1.3 0.42 -1.03 -1.91 0.63 -0.25 1.66 -1.52 1.26 - - 1.4 -1.08 - 1.21 -1.92 -0.84 0.49 - - - - -0.57 -1.72 -0.59
2.57 - - - 0.28 1.76 - - - - - 0.57 2.98 1.91 - - - - 2.56 - - - - - - - - 0.5 - - -
-1.79 0.53 -1.77 - 1.57 2.51 -0.42 -3.15 0.72 -0.01 - - -0.75 1.95 1.31 - - 1.7 1.46 1.95 - - - - - - - - - - -
1.07 -1.22 0.51 - 0.99 0.25 0.95 0.87 -1.62 -0.7 -1.82 1.07 1.28 1.41 -0.35 - - -1.79 -1.95 - - -0.72 1.49 - - 1.67 0.45 - -1.45 -1.6 0.8
Bra003690 (ADH)
 3.61 - - - - - 0.44 - - - - - - 2.91 2.43 - - - - - 1.48 - - - - - - - - - 0.78
Bra004182 (RK3)
 3.4 - - - - - - - 1.45 - - - 0.81 - 3.02 - - - 1.54 - - 0.63 - - - - - - - - 1.77
4.45 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.2
3.87 - - - - - 2.42 - - 1.59 - - 3.01 - - - - - - - - - - - - - - - - - -
Bra007475 (MPK10)
 2.33 - -1.68 -1.61 2.26 -0.06 -0.67 -1.25 -0.96 - -0.07 0.77 - 1.42 1.68 -1.57 0.27 -0.33 0.02 - -0.56 -0.34 -0.19 0.63 - -2.47 - -2.49 -0.69 -1.17 -0.29
Bra007626 (PLY)
 3.16 - - 0.8 2.06 - - 2.34 - 1.31 - - 1.51 - - - - - - - - - - - - - - 0.6 0.59 1.47 -
- -1.42 -0.85 -1.43 1.39 0.47 -1.0 - -0.0 0.08 -1.78 0.49 -0.1 1.5 2.15 0.72 0.24 0.24 -0.27 1.36 0.04 - - -1.94 -1.81 - -0.28 -1.49 -0.1 -0.17 0.31
Bra008230 (ATA27)
 4.21 - - - - - - - - - - - - - - - - - - - - - 0.94 - - - 1.11 - - 3.07 -
0.58 -0.38 -0.28 0.33 -0.1 0.77 -0.26 0.52 -1.13 0.11 -0.02 -0.06 -0.1 0.06 -1.42 -0.13 0.27 -1.15 -0.6 0.11 -0.3 -0.46 -1.54 -0.02 0.17 0.43 0.2 -0.22 0.28 0.46 0.74
1.37 1.8 1.62 1.54 -0.34 0.24 -1.29 - 0.01 - -0.68 - - 2.23 0.99 0.69 - -1.85 1.85 -2.0 -1.04 -0.24 - -0.65 - - - -1.72 - - -1.88
Bra009744 (CFIM-25)
 3.44 1.95 - - 1.41 - - - - - - - - - - - - - - - - - 1.22 1.52 -0.76 - 1.99 -0.6 0.41 0.27 -0.6
Bra010006 (ANX2)
 2.72 -0.33 - 1.91 0.9 1.22 0.08 0.85 - - -0.83 - 0.43 -0.4 - - 1.4 1.52 0.19 - - - -0.73 - 0.58 - - - - -0.62 -0.43
Bra010091 (EB1B)
 4.56 - - - - - - - - - 2.89 - - - - - - - - - - - - - - - - - - - -
Bra010298 (HA1)
 1.59 -0.58 -1.24 -0.26 0.73 0.65 -1.31 -0.44 0.41 -0.62 -0.04 -0.05 0.05 0.24 1.05 0.12 -0.33 0.86 0.43 -0.02 -0.74 -1.08 0.22 -0.6 -0.33 -0.53 -0.83 -0.95 -0.61 -0.59 -0.57
2.95 - - - - - - - - - - - 0.26 1.92 - - - 1.82 1.81 - 3.04 - 0.98 - - - - 0.15 - - -
Bra010769 (OXT6)
 3.55 - - - - - - 1.49 - - - - - - - - - - - 1.54 - - - - - 3.06 - 1.85 - 0.7 -
0.59 0.2 0.45 -0.35 0.25 0.67 0.24 0.58 -0.52 -0.32 -0.26 -0.21 -0.01 -0.03 0.73 0.19 0.22 0.49 -0.34 -0.32 -0.15 -0.56 0.52 -0.71 -0.75 -0.59 -0.52 -0.99 -0.99 -0.54 0.42
Bra013260 (RPS5)
 4.46 1.82 - - - - - - - - 2.44 - - - - - - - - - - - - - - - - - - - -
1.2 0.61 -0.22 0.18 0.41 0.4 0.11 0.56 -0.63 -0.69 -0.2 -0.29 -0.41 0.52 1.2 0.5 -0.01 0.6 0.36 -0.01 -0.02 -0.4 0.46 -1.76 -1.05 -1.64 -1.43 -1.85 -1.8 -1.95 -0.13
Bra013701 (AtFDB2)
 2.51 - 2.06 - 0.56 - 2.0 0.74 - 1.41 - - 1.67 1.81 0.69 - 1.61 - - - - - - - - - - - - - -
3.86 2.4 - 2.06 - - - 1.48 - - - - 0.84 - - - - - - - - - - -0.35 - - - - - 0.7 -
2.38 -0.8 0.35 1.2 0.05 - - -1.11 - - 1.3 0.29 - 1.17 - - - - - - - - 0.0 - 0.74 0.51 1.04 1.62 1.03 -0.03 0.99
Bra014341 (ORC4)
 3.2 - - - - - - - 1.25 0.84 0.64 - - - - 1.07 - -0.23 1.6 - - -0.24 2.19 - -0.19 - 0.82 1.01 - - -
Bra014399 (PRP3)
 1.83 0.81 2.73 -0.78 - 1.76 - -0.21 - - - - 2.18 - -0.91 - 0.44 - - - - -0.27 0.85 - - 0.82 - -0.95 0.94 -1.11 -1.0
2.59 - - - 1.34 0.8 - - - - - - - - 3.21 - - -0.28 - 1.41 - 2.02 -0.22 - - - - 0.16 - -0.01 0.0
1.44 - -2.2 -0.31 1.83 1.54 -1.45 -1.0 -1.95 -2.83 0.97 - 0.76 -2.44 -0.17 0.39 -1.72 0.1 0.41 -1.13 0.35 -1.89 0.84 0.17 0.67 - -2.79 -0.07 0.67 -1.28 0.24
1.53 1.53 3.52 1.19 - -1.88 -2.04 1.21 - - 0.1 - 1.0 - -0.65 - 0.61 - - -1.79 - 1.51 - - - - - - - - -1.88
Bra017038 (BPP1)
 2.68 - - -0.33 1.29 1.65 - -0.69 - - - - - -0.55 -0.37 - - - - 1.42 - -0.64 1.4 - 0.96 1.02 -0.51 - 1.47 -0.61 1.05
Bra017259 (CASP1)
 2.79 1.18 3.32 1.8 -2.08 -1.21 - -1.32 - - 0.54 - -1.97 - 0.14 -1.93 -0.97 - - -0.5 -1.24 - - - -0.12 - -1.17 - -0.46 - -1.07
Bra017978 (pBRP2)
 3.15 3.16 1.11 - 1.21 2.73 1.06 - - - - - - - - - - - - - - - - - - - - - - - -
Bra018476 (RGL3)
 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.59 - - -0.86 2.64 - - 0.2 - -1.21 - 2.38 -1.02 - 0.67 1.03 0.48 0.29 0.2 - - 1.11 -0.15 - - - - - -1.13 - -
Bra020306 (PUM19)
 2.61 1.65 3.07 2.31 - - - - - - - - - - - 1.36 - - -0.05 - - - - - 1.16 - - - - - 1.39
3.99 - - - - - - - 1.67 - - - - - - - 1.85 - - 3.05 - - - - - - - - - - -
Bra021459 (TBL20)
 - - - - 2.67 - - 3.64 - - - - - - - - - - - - - - - - - 2.53 2.67 - - - -
Bra021470 (AGL4)
 1.51 0.96 -0.62 -0.33 1.91 2.07 -0.19 -3.65 -0.98 -0.09 -0.19 -0.58 -0.62 1.27 1.83 -1.41 -1.97 0.05 0.34 0.44 -0.62 -1.62 - -2.07 - - -3.66 -2.31 - -3.47 -1.46
1.02 0.37 -3.57 -1.11 0.95 0.65 -1.48 -0.44 -0.17 -1.23 0.33 0.45 -0.81 1.0 1.65 -1.72 -2.49 0.58 0.08 -0.32 0.24 -0.15 -1.58 0.3 -0.41 -0.94 -0.28 -0.93 0.34 0.17 -1.34
3.71 1.79 3.46 1.77 - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra024515 (KATA)
 2.6 1.23 1.84 - 3.04 -0.29 - -0.34 -0.39 - - 0.46 - - - - 0.6 - - - 0.91 - 1.25 - - - - -1.26 - -0.29 -
Bra025443 (TPXL6)
 1.33 -1.05 - - 0.03 2.03 -1.36 -1.03 -1.78 -1.2 - -0.85 1.53 -0.21 1.81 0.31 - 0.64 0.85 - - -1.79 - 0.06 -0.08 0.8 0.2 0.37 -0.77 -1.28 0.51
3.45 - - - - 1.92 - - - - - - - - - - - - - - - - 2.94 - 2.0 - - - 2.19 - -
2.76 - - - 1.03 - 0.72 - 1.42 - -1.21 -0.64 1.55 1.34 0.48 - - -1.09 0.89 -0.91 -1.07 - 0.39 - 1.57 - -1.02 - - 0.23 -0.67
2.08 - -0.4 0.03 1.56 0.31 -5.14 -1.3 0.81 0.69 0.46 0.79 -0.57 1.57 -0.82 0.85 1.33 0.66 -0.43 -1.35 0.09 0.66 - - -4.58 - - - - - -
Bra026558 (ATTX12)
 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra027331 (CYP705A30)
 3.48 - - - - - - - - - 2.89 - - - - - - - - - - - 3.63 - - - - - - - -
2.12 - 0.3 - 1.11 -0.21 - -0.81 - -1.78 0.01 - 1.41 -0.45 - - - 0.45 - -1.7 - - 2.57 -0.78 - 1.22 1.18 -1.66 0.93 - 1.1
0.31 0.17 -0.05 -0.6 0.3 -0.24 0.29 -0.23 -0.8 -0.24 0.12 -0.79 0.45 0.26 0.59 0.22 -0.43 0.26 -0.09 -0.49 -0.13 -0.89 0.49 0.07 -0.19 -0.07 -0.12 -0.38 0.27 0.17 0.25
Bra030312 (DKM)
 2.48 - 0.02 0.06 0.19 - - -0.11 - - -0.15 - - - 1.27 - 0.08 2.86 -0.06 - - - - - - - 1.1 0.24 - 2.44 -
Bra031879 (TPPJ)
 1.1 0.07 -0.29 0.42 0.42 0.74 0.02 -0.42 -0.61 -0.28 -0.16 0.0 -0.24 -0.12 0.05 -0.9 -0.85 0.12 0.18 0.29 0.18 -0.27 0.05 0.06 0.02 0.8 -0.88 0.01 -0.21 -1.05 -1.11
1.41 0.6 -1.34 -0.5 1.48 1.7 -0.47 -0.95 0.63 -0.14 0.93 0.47 0.13 0.99 -0.34 -0.94 0.81 1.11 1.05 -0.57 -0.59 -0.54 -2.46 - - - - - - - -3.36
Bra033830 (ARA3)
 2.62 1.01 3.08 2.11 0.88 1.17 -0.04 -2.16 -1.3 - - -1.77 - - -0.66 -0.9 -2.06 - - -1.08 -2.21 - -2.15 - - - -0.39 - - -0.41 -2.05
2.72 - - - 0.23 - - - 0.36 1.87 2.15 - - - - 0.53 - - - 2.3 1.31 1.85 - - - - - - - - 0.47
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra035401 (PNET2)
 4.21 - - - - - - - - - - - - 1.5 - - 2.22 - - - - - - - - - - - - - 2.32
Bra035441 (RBP1)
 4.44 - - - - - - - - - - - - - - - - - - - - - - - - - - 3.21 - - -
4.77 - - - - - - - - - - - - - - - - - - - - - - - - - 1.88 - - - -
Bra035987 (EXPB4)
 4.57 - - - 1.79 - - - - - - - - - - - - - - - - - - - - - - - - - 1.95
Bra037664 (MTHFR2)
 2.17 - -1.11 -0.04 -2.12 -0.76 -0.16 -2.42 -1.47 0.72 -2.22 0.4 0.69 0.03 0.45 1.54 0.11 0.68 0.18 -0.65 0.56 0.59 -0.68 -2.39 -0.71 -0.71 -0.26 -2.04 -1.07 -2.19 0.56
3.44 - 1.67 - - 1.76 - - - - - - 2.55 - - - - - - - - - - - - - - 0.97 - - 2.52
Bra038118 (HCA2)
 2.17 -0.64 0.06 0.33 1.7 1.06 0.14 -0.15 -0.73 0.03 -0.7 -0.16 -0.26 -0.17 0.75 0.3 - -0.56 1.06 0.6 -1.84 0.15 0.24 -1.87 -0.17 - -2.82 - - -1.79 -
Bra038135 (PHB7)
 2.55 0.69 - 0.83 1.55 1.52 0.3 - 1.18 1.28 - - -1.04 0.42 1.47 - 1.65 0.24 -1.51 - - -0.42 - - - - - - - - -
Bra038272 (UMAMIT3)
 0.02 0.01 -0.59 -0.87 1.15 1.01 -0.72 -1.09 -0.09 0.36 -0.08 0.34 -0.48 1.05 0.84 -0.37 -0.42 -0.23 -0.11 0.56 -0.53 -0.6 -2.24 0.24 -0.67 -0.36 -0.01 -0.59 -0.1 -0.34 0.21
- 0.53 -1.14 -0.47 0.33 0.97 -0.53 -2.65 0.3 -0.6 0.23 0.86 -2.46 1.55 -1.16 0.28 -0.89 0.02 1.42 1.4 -2.4 0.38 -0.1 - 0.84 0.49 -0.63 -1.23 -0.84 -2.55 -1.4
Bra039921 (AGL17)
 3.2 3.2 -1.57 -0.64 2.93 -0.92 0.65 - - - - - -1.4 - - - - -0.7 - - - -4.35 -0.47 - - -3.85 - -3.89 - - -
Bra040352 (FIP1)
 3.29 - 1.61 - 1.16 0.78 1.25 - 0.43 -0.39 0.92 -1.67 - - - 0.14 -1.5 -1.62 0.98 - - 0.07 0.49 - - - -0.5 - -1.35 -2.37 -
2.36 - 0.94 1.71 -0.51 1.95 -0.68 - - - - -0.56 0.59 2.06 -0.38 1.18 0.52 - 1.26 - -0.54 - - - - - - -0.27 - - -0.43

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.