Heatmap: Cluster_900 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-0.83 -0.05 0.16 -0.92 -0.1 -1.47 -0.6 0.03 -0.22 0.29 -0.09 0.14 0.63 -0.43 0.07 0.25 -0.36 0.86 -0.09 -0.29 -0.37 -0.53 0.6 0.03 0.3 0.64 -0.24 0.16 -0.49 0.46 -0.0
Bra027752 (VHA-E3)
-0.23 -0.12 0.43 -0.07 -0.41 -1.05 -0.02 -0.0 -0.16 0.02 -0.01 -0.27 0.93 0.04 -0.35 -0.05 -0.19 0.89 -0.59 -0.9 -0.83 -0.78 -0.03 0.13 0.03 0.39 -0.02 0.08 0.34 0.12 0.51

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.