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Heatmap: Cluster_26 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra002643 (HCF243)
 - - - - - 1.25 - - - - - - - - - 1.47 - - - 3.61 2.52 1.31 - - - - 2.45 - - - -
Bra003496 (DUF7)
 - - - - - - - 1.54 - - 2.37 - - 2.87 1.74 - - - - 3.62 - - - - - - - - - - -
Bra003545 (BGAL15)
 - - - - - - - - - - 2.16 - - 1.66 2.35 - - - 3.69 - - - 2.41 - - - - - - - -
Bra003602 (SMB)
 1.79 1.66 - - -0.0 0.39 1.08 -0.72 - 0.01 -0.16 0.15 2.42 0.32 -1.29 1.61 0.07 -0.66 1.72 - -1.69 - -0.01 - - - - - - - -
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - -0.84 -0.28 2.3 1.58 1.24 - 2.19 - 0.37 0.33 - - - -0.42 - - - 1.68 -0.64 1.56 0.35 - - - - - - 1.05 0.44
Bra005430 (NLM4)
 - - 3.46 - - - - - - - - - - 2.01 - - - - 3.99 - - - - - - - - - - - -
Bra005593 (RRP6L3)
 - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
Bra006984 (SAUR57)
 - - - - - - 3.1 - - - - - - - - - - - - 4.49 - - - - - - - - - - -
-0.94 -0.62 -1.33 1.18 0.3 -0.14 -1.96 -2.71 -0.47 -2.55 -1.75 -3.53 -3.56 1.08 1.75 -0.19 -0.21 0.39 1.94 -0.99 -0.88 0.46 0.31 0.75 0.34 - -0.49 0.18 -0.02 -0.76 -0.27
- -3.79 - - 0.83 0.86 0.31 -1.17 0.46 - 0.84 -3.78 1.11 -1.92 -0.02 1.16 0.87 1.11 2.21 - -0.24 0.6 -0.64 0.18 -2.36 -1.47 -1.46 -0.26 0.08 -1.5 -0.2
Bra008707 (CIL2)
 - 3.86 - - - - - - - - - - - - - - - - 4.04 - - - - - - - - - - - -
Bra009717 (TPS21)
 - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
0.86 -0.61 0.12 -0.43 2.21 1.36 0.52 0.19 -1.61 -0.93 0.94 -3.34 -0.81 -0.29 0.95 0.33 -1.96 1.4 2.04 -1.31 0.44 -0.69 - -4.77 -6.69 - -4.62 - -5.24 - -
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
Bra012213 (SK3)
 - - - - - - - - - - - 3.37 - - - - - - 4.37 - - - - - - - - - - - -
- - -2.28 - -0.95 - 1.39 -3.47 -0.71 - -0.1 -0.34 -0.74 0.24 0.33 1.49 1.46 0.41 3.03 1.8 -0.38 1.52 - - - - - - - - -
Bra013595 (HON4)
 - 1.78 -0.32 - 1.85 -0.53 -0.69 -0.71 0.92 - - - -0.25 0.81 2.04 0.66 1.24 -0.62 - 1.87 - - - - - - -0.54 - - 1.55 -0.34
Bra014236 (YAO)
 0.21 2.12 - - -3.0 -3.14 -0.71 -0.72 2.18 -0.83 -1.66 - 0.53 1.1 0.31 0.67 1.33 -2.9 1.23 2.37 0.39 -3.27 - - - - - - -2.02 -1.42 -
Bra015228 (CHX18)
 - - - - - - - - - - - - - - - - - - 4.71 - - - - - - - - - 2.27 - -
Bra016125 (PGPP1)
 - 0.47 - - - 2.08 -0.82 - - - - 0.67 - 2.05 0.74 - - 1.64 2.61 - - - 2.08 1.01 - - - - - 0.98 -
Bra016567 (MPK8)
 - 0.89 - - 1.68 2.64 1.43 - 1.63 0.64 0.65 1.01 - - 0.97 0.86 - - - 1.74 - - - - - - - - 0.77 - -
- - - - - - 2.69 - - - - - - - - - - - 4.62 - - - - - - - - - - - -
- 2.41 - - - - - - - - - - 2.68 - - - - - 3.12 2.42 - - - - 2.39 - - - - - -
Bra018539 (PFB1)
 -0.66 -0.3 0.63 0.37 0.33 0.32 -2.84 - -0.1 -0.8 -3.45 -3.45 -2.18 -0.77 0.67 -0.01 0.01 -3.1 -0.25 2.33 -0.52 0.9 -0.99 0.96 0.05 0.03 0.97 0.14 0.15 -1.41 -1.37
Bra018882 (ENODL9)
 -0.46 0.08 0.84 -2.23 0.77 0.31 -0.21 0.81 -0.26 - 0.26 0.42 -1.32 -0.05 0.96 -1.71 -1.15 0.58 0.79 -1.52 0.05 -0.14 0.35 0.16 0.35 -0.56 -0.33 -0.37 -1.38 0.27 0.24
Bra019091 (MPH1)
 - - - - - - 0.37 - - - 2.06 0.67 - 1.9 - 1.8 1.63 - 3.39 - - - 0.65 - - - - - - - 0.65
Bra019358 (CRK2)
 - 2.4 - - - - - - - - - - - - - - - 3.18 3.02 - - - 0.92 - - - - - - 2.11 1.21
Bra019394 (AtFDB31)
 - - -1.18 - 2.76 - - - 2.76 - 2.13 - -0.28 -1.17 - 0.67 1.86 - -0.34 - - 2.42 - - - - - - - - -
Bra019525 (JAL34)
 - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - - - - - - - - - - - 0.43 0.32 - 3.68 3.71 - - - 0.21 - - - - - 0.41 - -
1.7 - - - 1.51 2.42 - 0.63 - - 0.44 - - 0.55 0.65 - 0.51 1.96 2.52 - - 1.35 - - - - - - - - -
Bra022007 (FK)
 - - -1.45 - 0.55 2.21 - -1.3 - - 0.85 1.79 1.15 0.39 - - - 0.61 2.09 - 0.09 1.19 - 0.63 1.46 - -0.94 - - - 0.5
- - - 1.38 - - - - - - 0.62 - - - - - 3.16 0.91 - 3.82 - - - - - 0.95 - - - - -
Bra022158 (APAP1)
 - - - - - - 2.38 - - 1.52 - - 2.88 - - - - - 3.64 - - - 1.63 - - - - - - - -
0.58 - -2.23 0.15 2.38 1.22 -1.18 0.22 1.1 - 0.04 0.27 0.06 0.7 1.17 0.66 1.06 -0.87 - 0.55 0.53 -0.15 -2.08 -2.2 - - - - - 0.04 -1.9
Bra022669 (AtDOA15)
 - - - - - - - - - - - - - - - - - - - 4.71 - - - - 2.29 - - - - - -
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - - - - - - - - - - - - 1.48 - - - 3.6 3.24 - - - 2.73 - - - - - - - -
Bra024476 (SYP112)
 - - - - - 1.9 - - - - - - - - - - - - 1.67 4.29 - - - - - - - - - - 2.16
Bra024775 (NRP1)
 - - - -1.19 1.49 2.34 -1.23 - 2.74 -1.12 - - - - 1.18 0.11 - -0.89 1.13 - - 0.37 -1.06 0.32 - - - - -0.02 0.59 1.83
Bra025289 (CYP96A11)
 -1.75 -1.72 -1.7 -1.57 1.05 0.47 0.66 -0.29 0.9 0.31 -0.06 -0.61 -0.48 0.89 0.54 1.02 -0.61 1.39 0.98 -0.5 0.43 -0.67 -2.12 -0.9 -0.88 -0.79 -0.82 -0.58 -0.38 -1.08 -0.26
Bra025290 (NRG1B)
 -0.11 0.38 -0.15 -0.13 0.98 0.74 0.04 -0.68 0.74 0.23 -0.02 -0.2 -0.41 0.48 0.14 0.56 -0.36 -0.1 -0.17 -0.37 0.07 -0.14 0.26 -0.55 -0.57 -0.79 -0.14 -0.92 -0.22 -0.45 -0.43
Bra025590 (TCX5)
 0.11 -0.96 -0.29 -0.19 1.44 0.66 -0.4 -0.73 1.19 -1.69 1.25 -0.17 -0.34 -0.19 0.04 -0.12 1.33 0.76 -3.55 -1.46 -0.81 -0.35 -2.07 -1.21 -1.1 -2.39 0.06 -0.66 0.05 -0.21 0.71
Bra026648 (RSL1)
 - - - - - - - 0.2 - 1.56 0.01 1.33 1.13 - - - 1.08 - 2.32 - - - 1.98 - 0.27 - - 1.14 1.13 - 2.18
-2.23 -3.22 -1.65 -1.65 -2.25 -2.07 -2.25 -2.33 0.1 -0.62 -0.07 0.0 -0.53 1.42 0.84 0.2 -0.79 1.06 1.24 0.43 -0.66 -0.12 0.94 0.79 0.33 0.2 0.37 0.44 0.08 -0.18 -0.63
1.13 0.42 1.65 -0.5 1.99 1.59 -0.96 -0.58 -1.78 -1.25 -0.53 -1.5 -1.46 -0.97 1.67 0.61 0.1 -2.1 0.33 -2.11 -0.63 0.54 - - -0.42 -2.82 -1.56 -1.31 -0.35 -0.36 -
- - 3.93 - - - - - - - - - - - - - - - 3.98 - - - - - - - - - - - -
Bra029171 (SKS2)
 - - - - -2.97 0.1 -0.25 - -4.17 -0.39 -2.05 -3.98 0.02 1.46 0.47 0.58 -1.46 -0.71 1.56 0.59 -2.36 -1.74 0.84 2.4 0.98 0.65 0.38 0.04 -0.04 -1.47 0.02
Bra029386 (PAE9)
 -1.14 0.59 1.77 0.45 0.27 -0.53 -1.0 -2.37 0.51 0.14 -1.39 -2.14 0.15 0.21 0.2 -0.67 0.05 -0.02 0.71 0.99 -4.05 -0.21 -1.1 -0.31 -1.74 -1.61 -1.44 0.34 0.8 -0.29 0.86
- - - - - - - - 2.49 - - - - - - - - 3.28 3.97 - - - - - - - - - - - -
Bra029958 (CNGC19)
 0.39 0.42 0.66 -2.0 -0.28 2.25 -1.53 -1.86 0.42 -0.3 0.08 -1.14 -0.96 0.65 -0.43 0.27 0.35 -2.64 0.21 1.51 0.96 0.31 -3.16 -1.59 -1.35 -1.07 -0.02 -2.2 -1.15 -2.37 -0.28
- - - - - 1.41 -2.19 -0.51 1.74 - -1.92 0.91 2.27 0.89 0.77 - - 0.98 2.07 -0.68 - 0.48 -2.54 - -0.04 1.73 -1.77 -0.74 - - -
Bra030451 (PLT2)
 - - - - - - - 2.32 - - - - - - 2.9 - - - 4.21 - - - - - - - - - - - -
Bra030932 (NOT11)
 - - - - 0.63 - - - 2.77 - - - - - - 0.92 0.68 2.3 2.19 1.46 0.73 2.38 - - - - - - - - -
- - - - - - 0.36 - - - 2.33 - - - 2.39 - 0.57 - - 3.76 2.14 - - - - - - - - - -
Bra031483 (UGT2)
 - - 1.45 - 0.55 2.59 - - - - - 0.96 - - - - - - 2.94 - - - 2.16 - - - - - 0.72 0.67 1.79
Bra031880 (WIND4)
 - - - - 1.36 2.22 2.13 - - 2.22 - - - - - - - - 1.36 3.61 - - - - - - - - - - -
Bra031890 (ANNAT2)
 - 0.79 - - -1.97 -1.99 -1.1 -0.95 -0.48 -0.33 -2.04 - 1.74 -0.83 0.36 - 0.15 0.94 1.16 0.71 - -0.47 2.26 1.44 0.48 -1.57 0.37 - -1.81 -0.81 0.87
Bra032346 (MED17)
 - - 1.87 0.52 1.23 0.67 -1.37 - 0.39 - -1.45 -1.47 -1.33 -0.91 1.89 0.77 1.0 -1.22 - 2.08 - -0.38 - - - - 1.41 - 0.08 -0.02 0.09
- - 2.7 - - - 2.72 - - - - - - - - - - - 3.77 - - - - - - - - - - - 2.09
Bra032510 (CKL13)
 - - - - - - - - - 2.65 - - - - - - - 3.55 - 3.7 - - - - - - - - - - -
Bra032584 (CEL2)
 1.12 - - - - - -0.56 - - - 0.52 - 2.23 - - 1.88 0.9 - 2.33 0.74 -0.41 -0.45 2.3 - - - 0.67 - -0.16 -0.21 -
1.44 - 0.74 0.6 -1.64 1.09 -3.06 - - 0.32 - -1.21 -1.69 0.49 1.34 0.59 0.53 -0.31 1.81 1.89 0.23 -2.68 -1.55 - -0.57 -1.64 - -1.41 -1.63 0.12 0.23
Bra033492 (AGL73)
 - 1.86 -1.21 0.43 2.03 1.41 - -0.91 1.34 0.36 -0.34 - 0.61 - 1.31 - 0.04 -0.22 -0.31 - -1.11 1.57 - - - - - -0.92 - 1.61 -
Bra033926 (CRF12)
 -0.79 -0.25 0.11 -1.76 1.75 0.05 - - 0.74 -2.2 -0.33 -1.35 -1.02 - -0.19 - -2.11 1.74 2.54 - - -2.38 1.89 0.0 -1.92 - -0.66 -0.41 - 1.09 0.34
Bra034475 (La1)
 0.27 1.2 0.91 1.1 -0.29 1.48 -0.99 -1.8 -1.96 -0.33 - -0.29 -2.55 -0.17 -0.35 -0.28 0.14 -0.57 1.66 0.05 -2.9 0.1 -2.77 -0.61 0.68 0.14 - -0.96 0.09 -0.18 0.48
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - 4.55 - - - - - - - 2.93 - - - -
- - - - - - - - - - - - - - - - - - 3.68 - - - - - - - - - - - 4.19
0.44 2.24 0.45 - - - 0.37 - 0.48 0.37 - -0.85 - 0.28 1.12 - 0.76 - -0.7 1.69 - 0.02 0.15 - 1.88 - 0.14 1.38 -0.83 - -
Bra036994 (CFM3A)
 - 2.7 2.59 - - - - - - - - - - - - - 2.47 - 3.03 - - 2.25 - - - - - - - - -
Bra037617 (RASD1)
 - - - - - 3.75 - - - - - - - - - - - - 4.13 - - - - - - - - - - - -
Bra038117 (ARL2)
 - - - 2.61 - - - - - - - - - - - 2.9 - - 4.12 - - - - - - - - - - - -
Bra038573 (FRG4)
 - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
Bra038802 (smB)
 - - - - - - - - - - 2.4 - - - - - - - 3.53 3.83 - - - - - - - - - - -
0.37 -0.42 0.03 -0.43 0.73 1.06 -0.2 -1.46 0.48 -0.28 -0.46 -0.4 -0.9 -0.22 1.23 -0.45 -0.13 0.27 0.52 0.13 -0.51 -0.88 -0.81 -0.47 -0.55 -0.47 -0.71 -0.24 0.49 0.12 0.57
0.12 0.39 0.59 0.05 0.75 0.48 -1.05 -0.41 -0.1 0.13 -0.59 -0.17 -0.93 -0.13 0.57 -0.5 -0.45 1.54 1.63 -0.61 -0.72 -0.19 -0.28 -0.54 -0.8 -2.03 -0.75 -0.68 -0.36 -0.44 -0.72
Bra039596 (ARS1)
 - - - - - 2.95 - - - - - - - - - - - 3.25 3.78 - - - - - - - - - - - -
Bra039765 (SPT16)
 - -0.52 - - - - - - - 0.84 - - - 2.44 - - - 1.54 2.64 - - - - - 0.88 -0.61 - - 1.03 0.8 2.94
- - - - -6.7 2.9 - -0.12 0.72 0.82 - -5.58 - 0.0 - - 2.09 -6.53 0.66 3.14 - 1.34 -0.07 -6.77 - - - - - - -
Bra039838 (FUT6)
 - - 1.65 - - - - - - - - - - - - - - - 3.55 - - - - - - - - 2.0 - - 3.61
0.69 0.55 0.06 -1.15 0.91 1.1 -0.68 -0.52 0.31 -0.48 -0.47 -0.48 -1.3 -0.11 1.09 0.3 0.1 -0.78 0.75 0.38 -0.19 -1.15 -2.53 -0.95 -0.28 -0.94 -0.33 -1.61 0.3 0.61 0.18
0.49 1.19 1.65 -0.75 -1.84 1.24 - -0.36 -1.45 -0.91 -0.49 -2.47 -1.62 -1.41 1.47 1.38 -0.49 - 1.35 0.97 0.16 -0.13 -1.15 -3.29 -1.48 -1.97 -1.23 -1.1 0.85 -0.13 -1.74
Bra041059 (ACR5)
 - - 2.07 1.12 0.72 0.54 0.32 - - - 0.39 - - -0.24 2.3 0.69 - - 2.37 0.9 - - - - - - - - 1.46 -0.21 -0.09
Bra041067 (PATL4)
 - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.