Heatmap: Cluster_83 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000423 (WRKY46)
-1.15 -0.86 -4.56 - -0.07 -1.69 -2.37 -3.18 -2.7 -0.86 - -2.11 -1.81 -0.62 -1.28 -1.44 -1.89 1.48 -2.51 -1.58 -2.03 -2.4 4.33 -2.36 -2.0 -4.88 -2.77 -1.6 -2.3 -2.77 -1.47
Bra000495 (FIT)
- -0.28 -0.71 - 0.86 0.78 -0.76 - - - - - - -1.9 -1.63 - - 2.65 -1.86 - - - 4.13 - - - -3.03 - -2.82 -1.87 -1.82
Bra001875 (LTPG20)
- - - - -3.93 -3.94 - - - - - - 0.64 - - -3.61 -2.11 2.74 -3.96 - - - 4.4 - - - - - - - 0.14
- - -3.28 - - -0.11 - - - - - - - - - -1.56 - 2.3 -0.12 - - - 4.46 - -2.89 - - - -2.89 -1.87 0.28
Bra003965 (MMP)
- - - -0.24 -1.52 -1.58 - - - - - - 1.18 - - - -2.38 1.74 - - - -2.66 4.45 - - -2.61 - - - -2.4 0.37
- - -2.28 -0.18 0.54 -1.63 -0.13 -1.62 -2.51 -1.01 -1.03 -0.53 -0.46 -1.39 -1.32 -0.37 -0.91 1.32 -1.7 -1.53 - -0.72 4.14 -1.7 -1.46 -2.24 - - - - -
Bra004473 (MYB2)
- -1.13 -0.8 -4.14 -1.16 -0.28 -3.68 -4.67 -4.12 -0.39 -2.94 -1.19 -2.49 -3.61 -3.65 -0.69 -1.75 1.97 -1.3 -3.9 -2.04 -0.38 4.21 -2.62 -3.29 -3.24 - -3.23 -1.25 -0.14 -2.79
- - - - - - - - - -5.07 - -2.41 -2.48 - - - - 1.92 - - - - 4.74 - - - - - - - -
Bra004966 (LAC5)
- - - - -0.77 - -1.99 - - -0.71 - - 2.23 - - - - 2.1 - 0.89 - - 4.23 - - - - - - - -
-4.55 -3.51 -2.35 -1.65 -0.98 -3.41 -3.58 -2.46 -1.76 -3.36 -1.69 -2.08 -1.05 -2.69 -0.36 -2.13 -0.45 2.11 -3.09 -0.88 -1.92 - 4.26 -1.85 -2.95 -1.84 -1.64 -2.76 -2.45 -2.03 -2.47
Bra005301 (ABS2)
- -1.45 -0.37 -3.41 -3.87 -2.82 -3.03 -1.52 - - -2.89 -2.8 1.15 -1.98 - -2.58 -2.63 2.26 -3.9 -1.17 - - 4.31 -3.82 - - -2.85 - -2.07 - -1.09
- - - -3.93 -0.04 -0.53 - -2.62 -1.35 - -3.52 -3.96 -2.14 0.38 -1.46 -1.77 -1.62 1.8 -2.84 -4.26 -0.59 -2.45 4.19 -3.48 -1.92 - -3.17 -0.17 -1.31 -2.6 0.4
Bra007511 (ATL91)
- -2.75 -1.81 - - -1.96 - - - -3.06 - - -1.69 - - - - 2.94 - - - - 4.46 - - - - - - - -2.95
-2.2 -3.2 - - -0.96 -1.65 -2.76 - - - - -2.59 -1.11 -2.5 -3.41 - -3.41 1.65 -1.46 - - -1.76 4.64 - - - - - - - -
Bra007600 (PUB36)
- -1.56 - - 0.3 -2.02 -3.14 - - -3.06 - -2.97 -1.22 - - - -2.87 2.33 - - -2.93 - 4.5 - - - - - - -2.8 -1.77
Bra007611 (ACS1)
- - - - - - - - - -1.06 - -0.98 - - - - - 2.11 - - - - 4.68 - - - - - - - -
Bra008127 (SS2)
-2.95 -2.12 -1.51 -1.73 -0.49 -0.24 -1.46 -2.02 -1.21 -0.52 -1.25 -0.01 -0.62 -0.21 -1.05 -1.32 0.07 0.72 -2.1 -0.58 -1.07 -0.95 3.9 -0.75 -0.99 -0.45 -1.65 -1.61 -1.66 -1.46 -2.43
Bra009072 (ABCF2)
-2.6 -1.93 -2.39 -3.17 -1.67 -0.48 -1.79 -1.69 -1.44 -2.18 -1.69 -1.6 -0.67 -0.85 -1.18 -1.86 -1.53 0.78 -2.57 -1.93 -2.01 -1.81 4.14 -3.35 -2.69 -3.57 -1.9 -3.36 -1.52 -1.14 1.72
Bra009388 (PRP10)
-1.37 -2.5 -3.58 -5.66 -0.59 -1.26 -1.46 -1.01 -1.87 -1.86 -2.23 -1.41 1.07 -0.82 -0.04 -1.19 -0.62 2.48 -1.47 0.03 -1.31 -0.83 3.76 -3.74 -3.97 -3.29 -5.67 -3.88 -3.89 -4.6 -0.8
- - - - -3.76 -4.88 - - - -4.95 -4.03 - 0.7 -4.56 -2.37 -4.62 -2.47 3.07 - - - -1.98 4.23 -3.4 - -3.86 - - - - 0.1
- -3.17 -2.6 - - -3.56 - -2.7 -2.72 -1.99 - - -0.76 -0.08 -1.67 - - 2.15 - -3.48 -1.65 - 4.51 - - - -3.58 -3.23 - - -1.4
Bra010089 (HVA22B)
- - - - - - - - - - - - - - - - - 2.9 - - - - 4.56 - - - - - - - -
Bra010592 (CP1)
- - - - - - - - - -1.77 - - - - - - - 2.46 - - - -3.43 4.64 - - - -3.3 - - - -3.01
- - - - -1.63 - - - - - - - 0.27 - - - - 3.27 - - - - 4.08 - - - - - - - 1.54
Bra011510 (CAD5)
- - - - - - - - - - - - -0.41 - - - - 2.38 - - - - 4.57 - - - - - - - 0.3
- - - - - -0.65 -0.73 - - - -2.71 -2.54 -0.03 -0.67 -1.38 - - 2.98 - - - -1.72 4.23 - - - - - - - -0.97
- - - - - 0.43 - - 0.75 - - - - - - - - 3.2 - - - - 4.23 - - - - - - - -
- - - - - - - - - - - - -1.34 - - -1.27 - 1.99 - - - - 4.71 - - - - - - - -
-1.65 0.03 -2.2 -0.45 -0.73 -1.78 -4.04 -1.72 -1.4 -1.36 -1.91 -1.22 -2.0 -0.9 -1.16 -2.23 -0.89 1.85 -2.62 -0.66 -3.63 -1.31 3.77 0.29 -0.45 -3.16 -1.05 -1.26 -1.13 -0.13 0.16
-3.89 -2.14 -4.99 -1.95 -0.13 -0.91 -0.9 -2.9 -0.71 -0.1 -0.98 -1.34 -0.49 -0.45 -0.02 0.25 -0.5 1.63 -1.47 -1.53 -2.28 -0.76 3.97 -2.04 -2.07 -3.73 -2.51 -2.75 -2.68 -4.08 -2.85
-3.8 -2.81 -2.31 -1.78 -1.79 -2.65 -3.37 -0.8 -2.76 -0.89 -2.02 -1.07 0.83 - -3.02 -1.65 -1.27 1.97 -2.6 -0.85 - -0.33 3.93 -2.04 -2.16 -0.33 -1.01 -1.64 -0.73 -0.19 -0.14
Bra015388 (MAPKKK18)
-2.55 -2.53 -1.69 -2.6 -0.52 -1.03 -1.4 -1.28 -1.18 -2.67 -2.07 -1.43 -1.11 -0.29 0.37 -1.37 -1.41 2.32 -0.02 -1.48 -2.4 -2.22 3.83 -0.8 -2.5 -1.53 -1.71 -1.97 -1.09 -2.19 -1.35
- - - - - - - - - - - - 1.71 - - - - 3.15 - - - -1.8 4.16 - - - - - - - -0.55
- - - - - - - - - - - - - - - - - 2.44 - - - - 4.5 - - - - - - - 1.55
- - - - - - - - - - - - - - - - - 2.54 - - - - 4.66 - - - - - - - -
Bra017010 (LAC5)
- -1.27 - - - -2.72 - - - - - - 2.17 - -0.14 - - 1.91 - -2.59 - - 4.34 - - - -1.68 - - -2.47 -1.48
Bra017086 (MLO12)
- -1.01 0.16 -3.6 -1.98 -0.28 -3.09 -2.23 -3.2 -0.92 -2.45 -1.05 -1.01 -3.18 -2.99 -2.45 -2.24 1.26 - -0.88 -2.98 -0.32 4.42 -2.31 - - - - -4.81 - -
Bra018067 (CEP2)
- - - -5.14 - -4.57 - - -3.17 - - -4.21 -3.4 -5.25 - - -3.38 1.7 - - - - 4.76 - -5.28 -4.61 -4.42 - - - -5.44
Bra018998 (ANAC19)
-1.65 -0.57 -0.05 -1.66 -2.3 -3.63 -5.24 -7.22 -3.62 -2.35 -5.61 -6.07 -6.87 0.18 -0.05 -4.51 -5.4 2.22 -1.64 -2.8 -5.04 -2.52 4.3 -5.49 -4.72 -3.5 -4.53 -5.22 -2.78 -1.06 -4.55
Bra020127 (SAUR70)
- - - - 0.25 -1.87 -2.03 -0.23 -1.03 - - -0.06 - - - - -0.77 0.88 -1.72 - - -2.0 4.41 - - - 0.11 -1.76 -1.81 -0.89 -0.75
Bra021113 (NAC3)
- - - -5.4 -4.15 -4.81 -5.07 -5.82 - -2.29 -3.97 -4.2 -4.06 - - -3.0 - 1.35 -5.66 - -5.76 -2.93 4.79 - - - -5.64 - - - -
Bra021389 (MYB2)
- - - - - -1.41 - - - -2.46 - -1.39 -1.15 -2.16 - - - 2.01 - - - - 4.65 - -2.41 - - - - -3.22 -
Bra021457 (ABR)
- - - - - - - - - - - - - - - - - 3.01 - - - - 4.52 - - - - - - - -
- - - - - - -0.55 - - - - - - - - - - 1.53 - - - - 4.78 - - - - - - - -
Bra021998 (SAG12)
- - - - - - - - - - - - -7.46 - - - - 3.12 - - - - 4.48 - - - - - - - -
- - 0.52 - - - - - - - - - 0.95 - - - - 2.57 - - - - 4.44 - - - - - - - -
Bra023817 (LTPG5)
- - - - -1.96 - -3.19 - - -3.98 -4.18 - 1.35 -3.64 -1.35 - - 2.37 -4.05 - - - 4.35 -2.53 - - - - - -3.87 0.69
Bra024224 (MYB41)
- - - - -0.11 - - - - - - - -0.07 - -0.97 - - 1.83 - - - - 4.45 - - - - - - - 1.69
Bra024677 (FEZ)
- - - - - - - - - - - - 0.36 - - - - 2.77 - - - - 4.43 - - - - - - - 0.34
Bra024795 (RNS1)
-8.25 -6.23 - - -6.1 -7.55 -7.12 - -8.73 -1.68 -5.69 -4.63 -4.55 - -6.35 -4.51 -4.36 2.91 -2.11 -6.51 -4.51 -3.8 4.49 - -7.25 -6.27 -7.58 -8.38 -7.39 - -3.78
Bra025527 (HHT)
-4.14 -2.55 -1.05 -3.22 -0.75 -2.57 -1.36 -2.2 -0.85 -1.56 -0.79 -1.08 0.12 -3.29 -2.21 -0.56 -0.95 2.04 -5.65 -1.11 -2.38 -1.95 3.44 -0.63 -1.63 -0.75 -0.31 0.45 0.34 0.96 0.52
Bra025658 (NAC2)
- - - - - -2.14 - -3.73 -4.62 - - - -0.8 -0.38 0.1 - - 2.09 - - - - 4.57 - - - - - - - -2.23
Bra025665 (CSAP)
- -5.09 -5.2 -4.49 -3.92 -3.49 -3.61 - -3.86 - -3.42 -3.24 -2.91 -3.12 -1.61 - -3.35 2.09 - - - -2.69 4.56 -2.75 -1.93 -1.18 -3.83 -2.4 -2.73 -3.83 -1.7
- - - - - - - - - - - - 0.9 - - - - 1.21 - - - -0.63 4.71 - - - - - - - -
Bra026138 (GLYI4)
-2.33 -0.67 1.33 1.06 - -5.83 -7.11 -5.28 - - -4.98 - -2.7 -4.13 -5.53 - -4.68 1.0 - - - -2.08 4.52 - -5.21 - - - - - -
Bra026353 (RD26)
0.07 -0.14 -0.01 -0.11 -0.81 -0.34 -1.21 -1.3 -0.69 -0.93 -1.15 -0.76 -0.72 0.16 0.09 -1.07 -0.99 1.49 -0.85 -0.61 -1.42 -1.02 2.85 -1.03 -0.77 1.04 -1.0 -1.07 -0.19 0.03 -0.16
- - - - - - - - - - - - - - - - - 1.68 - - - -2.28 4.77 - - - - - - - -2.15
Bra027238 (NAC3)
- -1.78 -3.8 -4.3 -3.92 -2.05 - - - -3.32 -7.16 - -4.29 -5.72 -2.62 -5.22 -4.53 1.39 - -6.98 - -2.46 4.74 -4.13 -4.22 - -5.5 -6.85 -4.88 -4.55 -4.92
Bra027501 (BHLH92)
- - -0.38 - -2.37 -0.12 -2.53 -0.62 - -2.53 - - -1.28 - - -1.2 - 2.65 -1.68 - -0.95 - 4.3 - - - - - -2.22 - -2.28
Bra028435 (NAC2)
- -1.67 - - -2.72 -1.85 -3.95 -5.41 -3.94 - - - -2.38 -1.74 -0.51 -2.82 -5.34 1.89 -5.48 -3.35 -4.35 -3.83 4.62 -5.49 -5.09 - - -4.11 -3.67 -3.67 -5.21
-2.32 -1.9 -0.42 - -0.81 -4.32 -2.45 -2.83 -4.45 -1.58 -2.5 -1.63 -0.43 -4.22 -0.42 -1.09 -1.03 1.64 -1.05 -2.66 -4.27 -0.68 4.34 - -4.02 -4.35 -3.34 - - -1.91 -2.12
Bra029033 (MYB49)
- - - - - -2.26 - -1.27 - -2.83 -3.03 - -0.19 - - - -2.73 2.28 - - - - 4.57 - - - - - - - -0.89
Bra029830 (MUM5)
- - - - - -2.95 - - - - - - -1.75 - -2.48 - - 2.75 - - - -2.59 4.51 -4.61 -3.48 -1.62 - - -1.78 - -
- - - - - - - - - - - - 1.28 - - - - 2.5 - - - -1.73 4.33 - - -0.61 - - - -0.09 -0.1
Bra030113 (AtHMP06)
- - - - - -1.62 - -1.65 - - - - 0.57 - -0.34 - 0.01 1.76 - - - -0.19 4.47 - - -1.66 - -1.44 - - -
Bra031053 (WRKY61)
- - - - - - - - - - - - -1.32 - - - - 1.32 - - -1.04 - 4.76 - - - - - -2.3 -1.42 -
- - - -3.8 -0.8 -1.86 -3.9 - -2.37 -2.9 -2.42 -1.2 -2.09 -0.33 -0.87 -2.58 -2.63 2.29 -3.06 -2.77 -3.79 -2.32 4.29 - -2.25 -3.46 -2.85 -0.79 -3.69 -2.72 -0.05
Bra031648 (ESL1)
-1.73 -0.8 -0.07 0.37 -1.52 -1.12 -2.76 -2.59 -2.83 -2.49 -2.34 -1.85 -1.17 -1.55 -1.61 -2.1 -2.31 2.46 -2.24 -2.64 -2.97 -2.81 3.94 -2.01 -2.12 -0.65 -1.58 -2.37 -1.69 -1.4 -0.77
-2.6 -0.98 -0.82 -0.54 - - -2.85 -5.01 -5.4 -2.75 - -3.67 -2.54 - -2.1 - -5.15 1.81 -2.61 - - -5.42 4.56 -3.8 - -3.16 -4.3 - -3.55 -2.18 -1.09
-0.47 -1.22 -1.59 -0.55 -0.24 -1.76 -1.33 -1.75 -3.01 -2.62 -1.06 -1.04 0.3 -0.27 -0.67 -2.19 -0.83 1.97 -3.52 -1.19 -2.8 -3.86 3.74 -1.81 -1.55 -1.52 -1.07 -0.49 -0.39 -1.14 -0.16
Bra033312 (MAN1)
-2.81 -0.3 -1.36 -3.0 -3.42 -3.92 -3.35 -3.53 -5.15 -1.92 -3.2 -2.91 -2.26 -2.97 -2.12 -2.99 -6.13 1.22 -3.82 -3.88 -4.21 -1.18 4.62 - -3.81 -2.4 -4.68 -3.18 -6.04 -6.16 -6.05
-3.32 -2.68 -4.59 -2.57 -1.69 -2.78 -3.73 -3.47 -2.61 -4.51 -3.72 -2.61 -2.4 -3.92 -1.98 -1.93 -2.45 2.34 -3.95 -3.07 -4.67 -5.53 4.44 -1.72 -2.66 -2.5 -2.23 -2.39 -2.78 -2.99 -1.99
- - - - - - - - - - - - 1.34 - - - - 2.6 - - - - 4.48 - - - - - - - -
Bra033934 (PDE337)
- - - - - - - - - - - - - - - - - 2.46 - - - -0.62 4.63 - - - - - - - -
Bra034072 (EXO70H4)
-2.89 -1.99 -1.84 0.26 -1.13 -1.37 -1.29 -2.22 -2.5 -2.61 -1.83 -0.93 -2.07 -2.23 -1.32 -2.09 -2.45 0.6 -1.26 -2.69 -1.82 -2.8 4.07 -0.24 -0.88 0.02 -0.55 -1.06 -0.17 -0.42 -0.51
Bra034742 (NANA)
- - - - - - - - - - - - -0.65 - - - - 2.34 - - - - 4.58 - - - - - 0.42 - -
Bra034803 (ANT1)
- - - - - - - - - - - - - - - - - 3.37 - - - - 4.32 - - - - - - - -0.42
- - - - - - - - - - - - - - - - - 1.58 - - - -1.07 4.78 - - - - - - - -
- - - - - - - - -0.72 - - - - - - - - 2.02 - - - - 4.72 - - - - - - - -
Bra038521 (AGP2)
-1.87 -1.39 -0.87 -1.25 -1.62 -2.82 -1.1 -1.15 -1.92 -0.41 -0.95 -0.74 0.04 -0.85 -0.46 -0.58 -0.56 2.04 -1.39 -1.43 -1.85 -0.66 3.86 -1.43 -1.98 -1.28 -2.66 -2.54 -3.06 -3.24 -1.69
- - - - - - - - 1.32 - - - - - - - - 3.23 - 0.55 - - 4.14 - - - - - - - -
Bra039120 (DOX1)
-6.12 - -4.49 -7.13 -4.7 -6.62 -5.67 -5.89 -4.92 -2.01 -4.84 -2.43 -3.13 -4.66 -4.56 -3.16 -2.99 1.27 -7.8 -6.48 -7.53 -1.46 4.76 - -5.53 - -7.59 - -7.35 - -4.99
-5.99 - - -5.0 -4.81 -4.79 -4.96 -4.7 -4.45 -6.44 -4.04 -3.0 -1.7 - -5.14 - -4.68 2.49 - - -2.45 - 4.6 - - - - -4.18 - -5.21 -3.04
- - - - - - - - - - - -1.44 1.27 - - - -0.41 2.38 - - - - 4.45 - -1.48 - - - - - -
Bra039737 (NHL6)
-1.71 -0.36 -0.14 -2.7 -0.0 -1.02 -1.9 -2.56 -2.25 -0.71 -2.06 -1.23 -0.24 -2.57 -0.53 -0.53 -1.17 2.04 -2.17 -4.59 -2.09 -3.82 4.14 - - -3.31 - - - -3.56 -2.98
Bra040274 (BOS1)
-2.55 -0.41 -2.83 -0.98 -1.29 -4.03 - - -3.15 - - -3.96 -1.2 -1.0 - - -3.78 2.31 -2.0 -3.9 - -4.12 4.44 - - - - -2.64 -2.27 -2.28 -2.85
Bra040833 (LTPG5)
-0.71 -0.44 -1.3 -0.17 0.19 -0.46 -1.15 -1.77 -0.83 -1.9 -1.54 -1.5 0.45 -0.15 0.15 -0.91 -0.82 2.16 -1.53 -0.94 -1.49 -0.57 3.17 -1.41 -1.78 -1.89 -1.58 -2.62 -1.21 -0.99 0.99
Bra040985 (CHI2)
- -3.15 -2.12 -3.61 -0.72 -1.56 - -2.01 -3.33 -0.15 -3.45 -2.33 0.09 -2.11 -1.09 -0.05 -3.34 2.62 -1.01 -2.65 -3.39 -3.53 3.89 0.06 -0.3 -2.06 - -3.18 -3.86 -0.52 -0.93

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.