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Heatmap: Cluster_190 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - - - - - - - - - - 0.61 1.73 - - - 3.65 - 1.44 - - 3.44 - - - - - - - -
- - - - - - - - - - - - - - - - - 3.89 - - - - 3.7 - - - - - - - 1.69
Bra001123 (HEL)
 -5.54 -4.63 -4.59 -6.09 -6.44 -5.16 -3.13 -3.23 -3.26 -2.54 -2.51 -3.32 0.41 -5.62 -6.25 -1.78 -1.59 3.85 -0.17 -1.43 -2.0 -1.41 3.53 -3.93 -4.44 -5.3 -3.5 -8.89 -8.85 -5.4 -6.32
Bra003310 (ATG8E)
 -0.09 -0.58 0.04 -0.59 -1.94 0.33 -1.06 -1.3 -1.08 -0.68 -0.38 -0.62 -0.02 -0.57 0.62 -2.14 -1.67 2.36 -1.51 -0.54 -2.35 0.64 3.4 -5.01 -3.65 -3.61 -2.49 -3.78 -4.96 - -4.01
Bra003696 (HMA6)
 -9.15 -2.93 -5.42 -4.42 -3.76 -4.41 -5.39 -6.64 -4.55 -0.56 -2.26 -0.53 -5.28 -6.34 -3.63 -2.91 -1.62 3.83 -4.64 -6.32 -5.9 0.23 3.69 -6.54 -5.58 -6.39 -4.35 - -7.93 -6.66 -
Bra004041 (BW62B)
 - - - - - - - - - - - - -0.24 - - - - 4.22 - - - - 3.53 - - - - - - - -
-0.22 1.31 1.12 0.84 -1.24 -1.11 -2.54 -1.74 -3.82 -2.49 -2.5 -2.58 -4.06 -3.46 -1.95 -4.25 -2.07 3.48 0.5 -2.34 -2.09 -1.58 2.6 -2.68 -3.1 -3.05 -2.26 -2.73 -1.58 -1.44 -2.08
Bra004297 (BW62B)
 - - - - -3.34 -3.31 - - - - - - -3.07 -3.19 - - - 4.33 -1.8 - - - 3.34 - - - - - - - -
Bra004655 (ADPG2)
 - - - - - - - - - - - - 3.22 - - - - 3.18 - - - - 3.66 - - - - - - - -
Bra004686 (ATL40)
 - - - - - - - - - - - 0.6 0.76 - - - - 3.83 - - - - 3.77 - - - - - - - -
-1.89 -3.89 -1.8 -2.51 -0.27 -1.72 -0.47 -0.52 -0.19 -0.69 -0.95 -1.53 0.03 -0.25 0.09 -0.14 -0.55 2.38 -1.22 -0.73 -2.29 -2.35 2.72 -0.47 0.19 -1.33 -1.39 0.59 0.18 0.32 0.03
- - - - - - - - - - - - 1.52 - 0.5 - - 3.95 - - - 1.16 3.18 - - - - - - - -
Bra006025 (PRP10)
 - - - - - -2.89 - - - - - -2.81 1.66 - -4.96 - - 3.54 - -5.11 - -2.72 3.91 - - - -3.41 - - -4.99 -0.85
Bra006697 (HSP18.2)
 - 0.3 - 0.34 0.83 - -0.83 - - - -0.76 -2.49 2.66 - -0.33 - - 2.51 - 0.54 -1.5 -0.63 3.07 -0.97 -0.92 - -0.98 - - -2.46 -
- - - - - - - - - - - - - - - - - 4.71 - - - - 2.27 - - - - - - - -
Bra009016 (HBS1)
 - - - - - - - - - - - - - - - - - 4.13 - - - - 3.76 - - - - - - - -
- -0.06 - - - -1.84 - - - 0.95 - - - 0.43 1.09 -1.46 - 3.51 - - - - 3.49 - - - - - - -1.96 0.19
Bra009032 (AGP4)
 - - - - - - - - - 0.61 -0.85 0.04 2.88 - - 0.31 -1.13 3.16 -2.45 -2.14 - - 3.17 - - -1.87 - - -2.09 - -
Bra009111 (LAC12)
 - - - - -2.32 -0.75 - -2.88 -1.7 -2.35 -2.22 -3.5 2.11 0.53 -0.48 - -2.79 2.82 -3.03 -2.25 - -0.77 2.44 0.66 0.52 -0.67 -0.31 -0.59 -0.06 -1.77 1.54
Bra009162 (GPAT7)
 - - - - - - - - - - - - 0.92 - - - - 3.63 - - - - 4.02 - - - - - - - -1.1
Bra009432 (DIV2)
 - - 0.01 - - 0.19 - - - - -0.75 - - -1.46 - - - 4.28 - - - - 3.03 - - - - - - - -1.63
0.34 - 0.83 - 0.1 -0.06 - - 1.39 -1.05 - - - -0.74 0.23 - - 3.26 -1.15 - - - 3.31 - - - - - - - 0.13
- - - - - - - - - - - - - - - - - 3.88 - - - - 4.02 - - - - - - - -
- - - - - - - - - - - - 0.91 - - - - 4.32 - - - - 3.2 - - - - - - - -
Bra012194 (RUBY)
 - - - - - - - - - - - - - - - - - 4.34 - - - - 3.42 - - - - - - - -
Bra014205 (prePIPL1)
 - - - - - - - - - - - - - - - - - 4.23 - - - - 3.61 - - - - - - - -
Bra014424 (ATL97)
 - - - - - - - - - - - - - - - - - 3.99 - - - - 3.13 - - - - 1.72 - - 1.61
- - - - - - - - - - - - 0.61 - - - - 4.27 - - - - 3.27 - - - - - - - -0.79
Bra017229 (ECP63)
 - - - - - - - - - - - - - - - - - 4.27 - - - - 3.12 - - - - - - 0.14 0.9
- - - - - - - - - - - - - - - - - 4.64 - - - - 2.41 - - - -0.27 - - - -
Bra017963 (RAX3)
 0.31 -3.35 -0.05 -0.93 -0.37 -2.24 -2.07 -0.91 -3.98 0.1 -1.07 -3.44 1.14 -2.04 -1.93 -1.59 -1.17 3.34 -3.89 -1.16 -3.91 -2.88 2.49 -0.72 -0.73 1.39 - - -1.65 -1.71 -1.61
Bra018027 (MYB45)
 - - - -3.17 - - - - - - - - 1.93 - -1.09 - -3.44 3.67 - -0.65 - - 3.62 -3.54 -2.51 - -1.86 - - - -1.83
Bra018335 (PCK1)
 - - - - - - - - - - - - - - - -0.55 - 4.32 - - - - 3.36 - - - - - - - -
Bra019431 (FAR5)
 -2.51 -2.55 -3.52 -5.06 -1.45 -2.2 -0.81 -0.44 -0.83 -0.25 -0.89 -2.08 1.25 -0.27 -1.97 0.68 -0.12 2.68 -1.56 -1.12 -1.08 -1.06 2.69 -1.23 -0.15 -1.33 -0.84 0.85 -0.36 -0.69 -1.24
Bra022221 (LEA30)
 - -2.64 -3.33 -4.79 -4.34 -6.44 -2.32 -5.4 - -6.46 - -6.36 -6.2 0.6 1.02 - -4.68 4.18 -4.1 -6.34 - -6.38 3.09 - - -3.7 -5.4 - - - -5.19
Bra023509 (PRX56)
 - - - - - - - - - - - - - - - - - 3.9 - - - - 4.0 - - - - - - - -
Bra023816 (LTPG20)
 - - - - - - -3.09 - - - - - 1.55 -2.49 - - - 3.37 - -2.74 - - 3.79 - - - - - - - 1.76
- - - - - - - - - - -6.1 -5.9 -1.24 - - -2.72 - 4.07 -5.07 -4.87 - -3.38 3.74 -5.01 - - - - - - -
- - - - - - - - -2.08 - - - 0.59 - - - - 3.81 - - - - 3.93 - - - - - - - -
Bra025884 (WAK1)
 - -0.12 - -4.45 -0.08 -1.55 - - -3.38 -0.61 -2.6 0.24 -3.14 -2.28 -0.37 -2.04 -4.84 3.25 -2.79 -4.8 - 1.44 3.69 - - - - - - - -
Bra026281 (MYB41)
 - - - - - - - - - - - - 1.75 - - - - 3.56 - - - - 3.98 - - - - - - - -
Bra026784 (GAT)
 - - - - - - - - - - - - - - - - - 4.77 - - - -2.08 1.79 - - - - - - - -
- - - - - - - - - - - - - - - - - 3.88 - - - - 4.02 - - - - - - - -
Bra027953 (CYCLASE3)
 -1.67 -3.71 -0.75 -1.48 0.79 -0.16 -4.21 - - - - -3.69 0.03 0.21 - - - 3.78 - -2.01 -1.69 -1.51 3.13 -1.5 -0.88 -3.69 -3.08 -3.83 -2.29 - -
- - - - -4.67 - - - -3.64 -0.56 -2.85 -1.72 -2.25 -2.09 - -1.9 -3.66 3.82 -2.97 -3.07 - -2.08 3.84 - - - - - -4.61 - -
Bra027969 (NHL4)
 - - - - - - -0.22 - - - - - 2.24 - - -0.47 - 2.94 - 0.01 - - 3.84 - - - - - - - 0.8
Bra028631 (PRP10)
 - - - - -5.67 -3.46 - -4.5 - - - -5.73 1.18 - -3.54 - -5.55 3.76 - -2.53 - -3.08 3.66 -3.52 - - -4.58 - - - 0.92
- - -0.58 - - - - - - - - - - - - - - 3.96 - - - - 3.41 - - - 1.32 -0.22 - - -0.24
Bra028761 (PRX52)
 - -5.08 - - -4.19 -3.9 -7.43 - - -6.67 - -8.26 1.1 -4.59 -4.35 -7.1 - 4.07 -3.96 -5.64 -6.7 -5.16 3.54 -6.05 -8.24 - -8.12 - -5.51 -5.86 -7.01
Bra028780 (DIV2)
 -2.38 - -2.79 -0.53 -1.41 -0.27 -3.85 -1.48 -2.86 -2.68 -2.87 -1.87 -1.17 -1.87 0.4 -3.48 -1.94 3.44 -1.11 - -1.7 - 3.55 -1.8 -2.54 -1.06 - -3.41 - -2.57 -0.59
Bra029005 (GPT1)
 -0.89 -1.18 -1.08 -1.23 -0.26 -0.85 -1.64 -1.26 -0.5 -0.83 -1.06 -0.32 -0.56 -0.87 -0.29 -0.79 -0.69 2.83 0.08 -1.12 -0.61 -0.58 2.51 -0.39 -0.39 -0.76 -0.75 -0.6 -0.95 -0.37 -0.21
Bra029753 (LAC7)
 -0.1 - -0.76 -3.65 - -3.7 - - -1.35 -1.36 -1.16 -3.22 0.1 0.68 -1.78 -2.03 - 3.97 -0.99 -2.6 -3.63 -0.37 2.66 - -1.24 -4.48 -4.06 -3.86 -1.58 -2.56 -2.44
Bra031599 (LBD1)
 -0.95 -0.12 0.59 0.11 0.79 -2.19 -3.35 -1.53 -1.29 -0.56 -1.57 -2.38 -2.95 -1.54 0.7 -0.92 -2.55 2.73 -1.81 -2.67 -3.11 1.11 2.8 -2.55 -3.7 0.16 -3.58 -4.53 -1.17 0.06 -0.14
Bra031664 (UMAMIT25)
 - - - - - - - - - - - - - - - - - 4.08 - - - - 3.81 - - - - - - - -
Bra031758 (BFN1)
 - -3.38 - - -5.46 - -4.5 - - - - - -4.2 - -4.96 - - 4.05 -5.5 - - - 3.76 - - - -1.71 -3.63 -3.22 -3.74 -5.29
- - - - - - - - - - - - - - - 1.19 - 4.21 - - - - 3.36 - - - - - - - -
Bra033138 (OSM34)
 -7.37 - - - - - - - - -5.51 -7.86 -5.72 -0.06 - -7.55 - - 4.46 - -5.7 - -2.85 2.97 - - - - - - - -
Bra033296 (NTL10)
 -2.95 -1.41 -2.63 -1.65 -1.31 -0.65 -1.7 -1.54 -1.02 -1.75 -1.5 -2.5 -1.67 0.49 0.31 -1.62 -1.85 3.77 -1.13 -1.19 -0.94 -1.68 1.95 -1.28 -1.39 -0.53 -0.48 -1.03 -0.94 -0.75 -1.23
-1.66 -1.33 0.34 -4.56 -6.55 -8.51 -7.66 -8.26 - -5.59 - - -3.52 - -8.31 -6.72 -3.61 4.24 -5.3 -5.3 -3.44 -3.52 3.26 - - - - - - -8.44 -
- - - - - - - - - -0.22 - - 0.59 - - - - 4.81 - - - - -0.88 - - - - - - - -
Bra033948 (BW62B)
 - - - - - - - - - - - - 0.23 - - - - 4.23 - - - - 3.45 - - - - - - - -3.26
- - - - - - - - - - - - 0.7 - - - -3.74 3.86 - -3.86 - -2.47 3.55 - - - - - - - 1.49
Bra034754 (PR3)
 -4.96 - -6.26 - - -8.62 -8.82 -8.7 -6.41 -3.54 -7.08 -5.22 -0.58 -5.91 -5.13 -5.51 -4.86 4.12 -7.64 -6.9 - - 3.65 -8.55 - - - - - - -6.81
Bra034843 (GPAT5)
 - - - - - - - - - - - - 1.81 - -1.49 - - 3.53 - 0.35 - - 3.73 - - - - - - - 0.07
Bra035976 (PHT6)
 - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - 3.88 - - - - 4.02 - - - - - - - -
- - - - - - - - - - - - 1.46 - -3.97 - - 3.75 - -1.78 - -3.3 3.6 - - -1.85 - - - - 0.96
Bra038506 (RGIL6)
 -1.12 -2.19 -2.29 -3.14 -0.72 -0.75 -1.08 0.03 0.21 -0.77 -0.25 -0.57 0.51 -0.28 0.19 -0.6 -0.67 1.74 -0.28 -0.62 -1.72 -0.25 2.07 0.5 -0.07 -0.23 -0.13 0.45 0.46 0.28 0.19
-4.94 - -3.56 -6.46 -0.7 -0.45 -1.67 -3.01 -0.97 -2.2 -2.89 -2.47 -2.43 0.37 1.2 -0.88 -1.3 3.43 0.64 -1.37 -1.2 -0.66 2.77 -1.46 -0.89 -3.26 -2.59 -1.38 -0.73 -1.47 -2.92
Bra038647 (FLS2)
 - - - - -3.5 0.8 - - - -2.15 -3.84 -3.64 -0.44 1.69 -0.98 -3.39 - 3.36 -0.73 - - -2.22 3.68 -1.65 - - - - - - -
Bra039265 (HB-7)
 - - - - - - - - - - - - -2.85 - -2.21 - - 3.81 - - -2.6 - 4.0 - -3.79 - - -2.92 -3.99 - -2.41
Bra039556 (BIA1)
 - - - - - -1.01 - -2.76 - -1.5 - -2.0 0.99 -0.8 0.3 -2.76 - 3.42 - - - -1.58 3.85 - - - - -2.66 - - -2.82
Bra039727 (GLP9)
 - - - - - - - - - - - - - - - - - 3.88 - - - - 4.02 - - - - - - - -
Bra040153 (NAC046)
 -0.01 -0.89 -0.56 -0.81 0.03 0.2 -1.91 -2.93 -1.79 -1.53 -2.09 -0.82 -1.53 -0.59 -1.44 -0.96 -3.07 3.63 -0.72 -1.72 -1.33 -0.93 2.61 -1.79 -2.47 -2.06 -2.0 -1.13 -2.12 -3.09 -3.84
Bra040164 (G3Pp4)
 - - - - -2.1 -0.68 -1.09 -2.0 -0.0 - - -0.3 -1.11 0.94 0.3 - -3.15 2.56 -1.39 -3.17 - - 3.25 0.45 1.29 -3.24 -1.29 0.49 -0.3 -1.51 0.1
Bra040248 (AGL46)
 - - - - - -1.28 - - - - - - - - 1.18 - - 4.18 - - - - 3.1 -1.42 -0.24 - -1.31 - - - -
- - - - 1.54 - -1.71 - - -0.37 -0.34 - 1.69 0.65 0.84 - - 3.12 - - -1.17 - 3.39 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.