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Heatmap: Cluster_62 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-2.45 - -2.0 -0.81 -0.07 -2.6 -1.72 0.04 -1.68 -1.68 1.0 1.25 -0.67 -1.13 -0.19 -0.0 -0.47 0.07 0.09 -2.38 1.36 -0.46 1.86 0.29 -1.33 1.44 1.04 0.06 0.78 -1.05 -
Bra002249 (GNL2)
 - 0.37 - - -0.53 0.73 -2.14 - 0.02 0.72 - - - - - -0.23 -1.04 - -1.93 - -2.04 - -0.48 1.37 1.81 2.21 1.99 0.16 -0.32 0.11 2.08
Bra002304 (XIK)
 -2.6 -1.64 0.11 -0.88 -2.06 0.26 0.65 -2.15 1.26 -3.0 -1.61 0.83 -0.82 1.31 0.6 0.41 - - 1.01 0.5 1.39 0.93 0.19 -3.16 -1.42 -0.94 0.22 0.73 -0.24 -0.29 -0.86
Bra002323 (MES16)
 - - - - - - - -0.23 - - - 2.23 - 2.64 2.84 - - - 1.9 - 0.85 - 2.27 - - - 0.79 - - - -
Bra002444 (scpl47)
 -0.32 -0.4 0.49 -2.44 1.03 1.2 1.25 -0.1 0.17 -1.18 0.48 2.39 -3.33 0.12 - 0.93 -0.45 -3.24 -0.1 1.3 1.42 -1.94 - -3.6 -0.74 - -3.5 -4.13 -1.76 -2.0 -1.45
Bra003278 (AGL18)
 - 1.2 - - - - - 0.76 - - - 0.4 - 2.32 - - - - - - - - 3.0 0.74 0.73 - 0.63 1.13 0.97 - 1.88
- - - - - - - - - - - 3.97 - 3.94 - - - - - - - - - - - - - - - - -
-0.07 -0.91 -1.24 -0.9 0.63 0.47 -1.26 -1.54 0.46 -0.3 0.19 0.94 -1.15 -0.29 -1.09 -0.84 -0.38 -1.82 -0.59 -0.17 0.24 -0.02 0.27 0.43 0.95 0.25 0.76 -0.41 0.39 1.06 0.01
- - - - - - - - 2.12 - 2.76 3.65 - 0.04 - - - - 2.44 - - - -0.24 - - - - - - - -
Bra004643 (LAP1)
 0.21 - 0.98 - -0.17 - - - 0.27 - - 2.63 - - - - - 1.32 1.58 - 1.86 - 3.25 - - - - - -1.07 -1.02 -
- - - - - - - - - - 1.24 2.67 1.51 - - - 1.41 - - - - - - 2.19 0.33 - 0.45 - 0.49 - 3.04
-0.82 -0.9 -1.41 -1.1 -0.18 0.5 -0.29 -0.51 -0.43 0.04 0.21 -0.44 -0.77 1.07 0.36 -0.17 -0.89 0.2 0.32 -0.79 -1.13 0.08 0.34 -0.03 0.27 -0.01 0.29 0.69 0.77 0.33 0.55
Bra004978 (SAN5)
 - - - - - - - - - - - 4.6 - - - - - - - - - - - - - - - - - 2.74 -
Bra005388 (MEE24)
 0.07 - - - -1.03 -0.05 -1.81 0.12 0.52 1.2 1.13 1.35 1.57 -0.05 0.02 0.8 -2.41 -0.23 0.09 -0.2 0.47 -1.61 0.2 1.59 - 0.56 -0.16 -0.79 - - -2.47
Bra005625 (CYS2)
 - - 2.71 - - - - 1.97 - - - 4.07 - - 1.9 - - - - - - - - - - - - - - - -
Bra005679 (OSH1)
 -1.33 -0.81 -1.32 -2.68 0.0 -0.08 -0.62 -0.95 0.11 -0.51 -0.37 -0.01 -0.89 0.76 0.26 0.2 -0.21 0.95 0.43 0.44 -0.31 -0.31 0.02 0.2 0.64 0.21 -0.11 0.3 0.63 0.44 0.25
Bra006785 (SVL5)
 - - 0.49 - 0.84 - - - - - - 1.85 - 2.65 - 1.0 - -0.61 0.65 -0.76 3.04 1.89 0.22 - - - - - - - -
Bra006834 (AGR)
 - 2.06 0.64 - 0.38 -0.68 - - -0.81 - 1.53 3.18 - - - -0.51 - - 1.78 0.93 0.94 - -0.62 - - - - - - - 1.15
Bra006880 (RDP)
 - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - -
-0.2 -0.71 0.43 -0.1 -5.17 1.25 0.57 0.24 0.83 -1.93 0.11 0.28 -1.84 -1.16 1.56 0.04 -2.57 -1.46 0.4 0.77 -4.24 1.16 0.32 -0.04 -0.69 -1.48 -0.75 -0.53 0.12 -0.56 0.06
Bra008708 (CASP5)
 - - - - - - - - - - - - - 2.31 - - - - - - - - 2.62 - - 1.92 0.14 0.18 1.76 1.03 3.07
-0.35 -2.39 -2.8 - -0.52 -1.6 -1.49 -0.57 0.03 -0.26 0.42 2.01 0.64 1.36 1.0 -0.15 1.1 1.83 0.74 0.91 -1.21 0.95 0.22 - -3.26 - - -3.44 -1.56 - -1.96
- 0.64 0.13 - - - - 0.25 - - - 0.64 - - - - - 0.19 - - - - - 1.71 - 2.63 - 0.51 2.03 0.37 3.04
Bra010846 (AtDOA1)
 - - -1.75 - -0.62 - -1.0 -0.07 -0.14 1.85 0.2 2.34 1.9 -1.63 - 0.03 -1.69 -0.82 0.13 1.64 -1.84 -0.81 -0.75 -0.73 -0.7 - -0.11 - 1.04 -0.63 0.52
Bra011400 (TRFL7)
 - - - - - - - - - 0.81 - 3.81 2.86 - - 0.04 - 2.45 - - - - - - -1.1 - - -0.08 - - -
- - - - 2.7 - - - - - - 2.97 - 2.97 3.15 - - - - - - - - - - - - - - - -
- - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - -
- -0.72 - - -1.92 -0.73 -2.26 -0.98 1.19 0.53 - 2.69 -0.14 1.76 1.97 -0.59 -1.89 0.71 0.52 0.04 1.94 0.32 - - - - - -1.56 - - -
Bra012930 (ATH15)
 - - - - - - 0.4 - -0.0 - 0.53 2.22 -0.83 1.35 - -0.71 - -0.04 - 0.07 0.07 2.1 2.54 - 0.33 - 1.32 -0.6 - - 0.33
- - - - - - - - - - - 4.09 - - - - - - - - - - 3.81 - - - - - - - -
- - -3.03 -3.39 - 1.02 -0.33 -0.71 -3.89 0.81 1.13 2.42 1.85 2.0 1.16 -3.36 -0.06 -0.27 1.95 - 0.04 0.45 - - - - - - - - -
0.51 - - -0.81 0.33 0.75 -0.91 - 0.04 - - 2.12 1.9 - 1.61 0.42 -0.64 -0.92 -0.93 - 1.52 - 2.48 - - -0.82 -0.67 - - - -0.55
- - - - - - - 2.28 - - - 3.26 - 1.74 1.61 - - 3.34 - - - - - - - - - - - - -
Bra015476 (MEF3)
 - - - - - - - - - - - 4.1 - - - - - - - - - - 3.79 - - - - - - - -
Bra016478 (SYT2)
 -0.71 -1.25 0.25 -1.89 0.59 0.1 -0.21 -0.86 -1.5 -0.06 -0.68 -0.62 -1.16 0.11 1.91 0.01 -0.37 -0.24 -2.21 -0.16 -2.13 -1.4 0.35 0.16 1.16 0.65 0.42 0.18 -0.65 0.16 0.93
- - - - 1.84 -1.27 -0.37 - - - -0.17 - 1.02 2.09 -0.92 -1.03 -0.11 1.35 0.28 0.87 - - -0.18 -1.31 -0.21 1.47 0.9 - -1.11 -0.06 1.73
Bra019450 (TADA)
 -0.34 -0.16 -1.12 -2.71 0.52 0.31 -1.59 - -0.67 -0.88 1.29 1.87 -1.16 -0.21 -2.2 -1.12 -0.38 -2.05 -1.36 0.72 0.66 0.15 -0.33 -0.07 0.59 0.56 1.52 -1.83 -0.5 0.42 -0.34
- - - - - 3.12 - - - - - 4.48 - - - - - - - - - - - - - - - - - - -
Bra019534 (NOT9c)
 - - - - - - - 1.71 - - - 4.1 - - 1.94 - - 1.67 - - - - - - - - - - - - 1.83
- - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - -
Bra019812 (CYP86C3)
 - - 2.63 - - - - - - - 0.94 3.0 2.79 - - - - - - - - - - - - 2.99 - - - - -
- -1.16 -0.65 - 0.31 1.78 0.59 -0.75 0.09 0.9 0.2 1.1 -0.17 1.45 0.25 - -0.68 0.72 2.66 - 1.36 -0.43 -2.24 - - - - - - - -
Bra020986 (BEH3)
 -1.81 -5.03 - - -2.63 -0.35 -3.89 0.28 -0.59 -1.15 0.17 -0.12 0.35 1.54 0.82 -1.85 -0.09 1.06 1.23 0.07 0.3 0.45 0.03 -0.01 -0.32 0.14 0.24 0.62 0.68 -0.34 0.04
Bra021342 (CYP76C7)
 1.29 - -0.86 - - 0.38 - - - 1.61 0.87 2.07 - 2.05 - -0.32 - 1.62 0.16 - 2.23 1.63 - - - - - - - -0.5 -
Bra021377 (KJK)
 -0.03 -0.69 0.68 0.24 -0.09 -0.33 -0.86 0.32 0.34 0.25 0.21 0.45 0.5 0.95 -0.02 -0.0 0.5 0.33 -0.14 -0.18 -0.46 -0.7 -0.89 -0.61 -0.36 -0.4 -0.25 -1.01 -0.34 -0.36 0.41
- - - - - - - 2.15 - - - 3.6 - - - - - - - - - - - - - - - - - 3.86 -
Bra021888 (iqd9)
 - 0.67 - -0.95 -0.26 - -0.54 -0.27 -1.5 0.28 - 2.13 2.45 - 1.42 1.22 - 2.15 0.96 1.54 - -1.32 - - - - - - - - -1.16
- - - - - - - - - - 2.22 4.36 - - - - - - - - - - - - - - - - 2.54 - -
- - - - - - -1.53 - 0.1 - - 1.81 - - - - -1.46 - - - -1.53 0.56 1.65 0.29 - 3.02 - 1.91 0.98 1.77 1.18
Bra023537 (GNA1)
 -0.36 -0.28 -0.3 -1.09 -0.35 -0.33 -0.89 -0.47 0.29 0.23 -0.45 0.47 0.95 0.42 0.54 0.31 0.67 0.99 0.32 0.46 -0.13 0.23 0.18 -1.01 -0.59 -0.67 -0.52 -0.67 -0.75 -0.52 -0.06
Bra023778 (RER4)
 - - - - 3.27 - - - 2.09 - - 3.6 - - - - - - - 2.33 - - - - - - - - - - -
1.56 1.52 - - 1.37 - - - - - - 3.6 1.44 - 1.45 - 1.35 - - 1.3 - - - - - - - - - - -
- - - - - - - - - - - 3.5 - - - - - - - - - - - - 4.3 - - - - - -
- - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - -
Bra025815 (MSH3)
 - - - - -0.26 -0.38 - - - - - - - 1.59 2.15 -0.14 -0.22 - 1.02 -0.27 - - 2.28 -0.41 -0.29 2.89 -0.34 0.89 -0.25 - -
- - - -1.59 -1.66 0.36 -0.03 0.04 1.11 - 0.1 1.36 -0.13 -0.72 -2.17 -0.86 0.12 -0.7 0.68 -1.55 0.29 1.37 1.11 -0.36 -1.48 1.41 -0.04 -0.3 -0.13 0.82 0.13
Bra026195 (PICALM9d)
 -0.16 1.45 0.35 - 0.66 - - - -0.4 1.52 0.39 2.79 -0.32 - - - - 1.32 0.41 - -0.46 1.43 -0.51 - - -0.48 - - 0.75 0.59 -
- - -2.6 - -0.31 -0.2 -1.87 -0.68 - -1.75 -2.96 0.43 -0.53 0.9 0.79 -1.46 -0.97 -0.12 0.54 1.51 -2.56 0.93 1.99 -0.06 0.8 1.62 -0.23 0.09 0.15 -1.1 -0.32
Bra026673 (SAC5)
 - - - - - -0.41 -0.67 -0.42 -0.59 -0.39 1.84 2.77 - -0.09 0.79 0.84 -0.37 1.41 1.36 - 1.95 - - 1.44 - - - - - - -
Bra029181 (PAT4)
 - - - - -0.87 - - - - - - 2.16 - 3.21 2.47 0.81 - - 0.46 - - - 1.94 2.07 - - - - - - -
Bra029565 (CRK25)
 - - - - - - - - - - - - - - - - - - - - - - - - - 3.52 - - - 3.27 3.31
-0.86 - - - - - 0.99 0.89 - - - - 0.05 0.75 2.13 -0.98 0.52 - -1.02 -1.1 0.42 - 2.9 - -0.87 2.1 - 1.58 - - -
- - - - - - - 1.09 -0.04 - - 2.07 1.38 - - 1.35 - 1.36 - - - - 2.19 0.12 1.17 0.08 - 1.85 0.24 1.16 -
Bra033434 (XYLT)
 - - 1.21 - 1.02 - 0.68 - - - - 3.31 - - 1.15 1.18 - 2.18 2.1 - 0.85 - - - - - - - - - -
- - - - - - - - - - - 3.74 - - 2.89 - - - - - 2.33 - - - 2.36 - - - - - -
- - - - - 0.76 -3.58 -3.07 - - 0.27 - - 2.52 -1.51 -0.82 -0.64 -0.59 - -1.28 - - 0.29 0.76 0.35 1.51 0.61 0.07 1.91 1.51 1.72
- - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - -
Bra035329 (CRK25)
 - - - - - - - - - - - 4.09 - - - - - - - - - - 2.71 - - - 2.89 - - - -
Bra035356 (DHAR1)
 - - - - - 1.35 - - - - - - - 1.8 - - - - - 2.54 - - - - 4.05 - - - 1.37 - -
Bra035431 (RGXT3)
 - - - - - - - - - 0.68 - 2.71 0.9 - - - 2.45 1.68 1.9 0.79 - - 0.78 - 2.37 - - - - - -
- - - - 2.72 - - - - - - 4.61 - - - - - - - - - - - - - - - - - - -
Bra036645 (MC6)
 1.3 - 1.41 0.37 0.04 -0.04 - - 0.12 - - 3.24 -1.81 - - -0.78 -1.83 0.48 - - - 0.84 2.47 - - -1.06 - - -0.84 -0.89 -0.83
- - 0.26 - -0.85 -0.87 - - - 0.38 -1.64 1.69 -2.18 -0.68 2.48 -0.17 -0.73 - 0.96 0.03 -0.07 1.33 -0.75 1.26 1.23 -0.05 1.16 -2.31 -2.42 -1.4 -2.47
Bra038010 (HMGB11)
 - - - - - 0.45 1.22 -0.29 -0.45 - - 2.41 2.22 - - - - - - 0.53 - -0.69 0.51 - -0.57 - - - 1.6 0.53 2.84
0.5 -1.23 1.75 - - 1.23 - -2.68 0.01 0.26 1.85 -0.04 - 1.74 -2.38 0.91 0.51 0.71 0.15 0.21 0.32 -0.74 -0.66 -0.77 - -0.35 -0.92 -2.31 - -1.57 -0.18
Bra038657 (KPL)
 - - - - 1.02 - - 1.2 0.77 - - 3.36 - - - - - - - - 2.58 - - - 1.25 - 0.92 - 1.2 - 1.09
- - - - - - - - - - - 2.81 - - - - - - - - - 2.32 - - - 3.39 - - - 2.5 1.52
Bra039991 (JOSL)
 -1.22 -2.7 -2.88 -1.12 -3.0 -4.56 -0.79 0.49 -2.44 0.18 -0.52 1.67 -0.33 -3.81 - -0.19 0.11 -2.72 -4.16 0.22 0.65 0.48 -3.43 1.37 1.77 1.17 1.32 0.02 -0.76 0.66 0.39
Bra040351 (AAC42)
 - - - - - - - - - - - 4.03 - - - - - - - - - - - - - - - - - 3.87 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.