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Heatmap: Cluster_93 (Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Control
Cold (3°C)
Dark (3 days)
Heat (33°C)
Light (435 uEm-2s-1)
Osmotic (100 mM mannitol)
Nitrogen deficiency (0 mM KNO3)
Salt (40 mM NaCl)
Cold-Dark
Cold-Light
Cold-Mannitol
Cold-Nitrogen deficiency
Cold-Salt
Heat-Dark
Heat-Mannitol
Heat-Nitrogen deficiency
Heat-Salt
Light-Salt
Mannitol-Dark
Mannitol-Light
Mannitol-Nitrogen deficiency
Nitrogen deficiency-Dark
Nitrogen deficiency-Light
Salt-Dark
Salt-Mannitol
Salt-Nitrogen deficiency
ZT2 (2 hours after light)
ZT6 (6 hours after light)
ZT10 (10 hours after light)
ZT14 (2 hours after dark)
ZT18 (6 hours after dark)
ZT22 (10 hours after dark)
-0.03 - - - - - 1.55 - - 1.02 - 3.21 - - - 1.0 - 1.11 - - - 1.1 3.09 - 1.01 - - - - - - -
- - - - - - - - - - 1.45 - - - 4.17 - - - - 1.31 - - - 3.14 - - - - - - - -
Mp1g13500.1 (PUB50)
 - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - -
Mp1g14400.1 (AAC2)
 -1.57 -0.48 - - 0.22 - -0.57 1.67 - -0.75 1.62 2.92 1.28 - -0.98 2.37 - - - 1.17 0.02 - -0.72 - 1.09 -0.82 - - - - - -
Mp1g19130.1 (LUP2)
 -0.47 0.92 - 1.05 - 0.39 - - - - - 2.07 - - 1.11 2.72 - - 1.78 - - - 1.3 1.86 1.18 - 0.35 - - - - -
Mp1g28970.1 (CYP706A4)
 0.02 -1.74 - -1.41 -1.08 0.96 0.16 0.62 1.58 1.42 0.96 2.17 0.98 - -1.35 -2.32 -2.41 0.8 -1.21 -0.31 -0.9 0.06 -0.26 -0.51 -0.33 0.9 - -2.01 -0.3 -0.91 - -
Mp2g00240.1 (THH1)
 2.23 - - - - - - - - - - 4.22 - - - - - - - - - - - - - 3.11 - - - - - -
0.86 - - - - 0.32 1.97 -0.45 - 1.89 0.33 3.04 - - - 0.82 - 1.64 - - -0.99 - 2.16 -0.61 -0.84 - - - - - - -
- - - - - 0.7 - 2.35 - - - 3.05 2.19 - 0.35 - 2.46 2.12 - - 0.37 - - - - - - - - - - -
- - - - - 2.54 - - - - - - - - 3.37 - 2.43 - - - 2.19 - - - - - - - 2.56 - - -
Mp2g05940.1 (NMNAT)
 - 2.53 4.37 - - - - - - 1.87 - - -0.58 - - - - - - - - - - -2.35 - - - - - -16.12 - 0.15
1.51 - - 1.65 2.46 - - - - - - 2.56 - - 0.61 2.28 - 0.84 - 0.71 1.63 - 0.79 - - - - - - - - -
Mp2g08800.1 (FIM2)
 - - - - - - 3.22 - - - - 3.08 - - - 2.66 - 2.98 - - - - - - - - - - - - - -
- 0.21 2.2 - 2.13 2.06 0.24 - 1.03 0.87 - - -0.03 - - 0.75 - - - -0.22 - - -0.11 - - 1.43 2.06 - - 0.44 - -
Mp2g12720.1 (RPOA)
 - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - -
Mp2g14810.1 (XTH3)
 - - 2.57 - - - - 2.01 - - 1.81 - 1.93 - - 1.78 - - - 1.81 - - - 2.03 - 1.87 - - - - - -
Mp2g21280.1 (HAC4)
 -0.28 - - - - - 2.76 0.84 2.34 2.17 0.63 2.38 0.61 - - - - - - 0.53 - - - - - 0.58 - - - 0.87 - -
Mp2g22240.1 (SEC10)
 -0.88 0.67 - -1.06 -0.92 - 0.3 - 0.21 2.42 -0.83 2.03 0.77 -0.81 1.2 1.09 1.01 0.14 - - - -0.96 0.69 - 0.01 0.01 - 0.23 - -0.63 -0.51 -
Mp2g24600.1 (LSH10)
 -0.57 0.25 - - - 1.32 1.31 -1.36 - 1.23 0.31 2.62 0.72 - -1.55 - 0.08 1.03 -0.33 -0.42 - - 2.16 - - -0.44 -1.25 0.57 -1.29 - -0.21 -
- - - - - 2.15 - 3.27 - - - 4.16 - - - - - - - - - - - - - - - - - - - -
Mp2g26190.1 (SAH7)
 0.41 0.73 1.85 1.15 -0.66 - 0.07 - - -0.64 0.98 0.49 - 1.03 0.13 0.14 0.75 - - - -0.95 0.46 0.39 - - 1.61 - - 0.38 - -0.46 1.71
-1.04 0.46 2.8 -2.43 0.71 -0.43 0.3 -2.11 -1.14 -1.27 - 0.53 0.59 - -2.45 -0.77 -2.43 1.08 0.9 - -0.42 -0.16 1.55 1.02 -0.03 0.08 -0.06 -2.31 - -1.7 - -1.88
Mp3g06210.1 (RPP4)
 - - 1.73 -0.73 0.55 - - - 1.96 3.33 - 2.51 - - - 1.67 -0.73 - - 0.94 - - - - 0.35 - - - - - - -
Mp3g17300.1 (NHL3)
 - - - - - - 2.3 1.4 - 1.72 - - 2.24 - 1.66 1.19 1.08 - - 0.12 0.98 0.17 1.17 0.33 - 0.18 - - - - - -
Mp3g17720.1 (DEG4)
 1.07 -0.58 1.46 1.26 0.39 - -0.71 - - - - 1.48 1.57 - 1.44 2.26 0.71 -1.3 - - -0.43 - -1.08 - - -1.16 -0.96 1.03 -0.15 - 0.8 -
-0.51 -0.11 - 0.32 - -0.48 - - -0.5 -0.57 0.43 1.56 -0.47 0.53 0.82 2.31 0.33 0.39 0.41 0.35 -0.79 0.36 0.47 0.41 - 1.32 - - - - -0.47 -0.22
Mp3g21130.1 (HMA4)
 -2.03 0.4 - - -1.73 - 3.25 0.99 - -0.47 -1.91 2.9 -0.91 - - -0.55 - -0.0 - - -0.68 -1.89 2.69 - - - - - - - -1.64 -1.74
Mp3g21810.1 (RTN6)
 0.32 - - - - - 2.4 - - 2.78 - 2.79 - - - 1.23 - - - - - - 1.26 - - 1.16 - - - - 2.23 -
- - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - -
Mp4g04490.1 (ENDO2)
 0.36 -0.27 -2.47 0.54 0.26 -0.63 -0.39 0.07 -0.11 1.63 -1.97 1.15 0.24 0.56 1.08 0.78 0.48 -0.16 -0.43 -0.51 -0.23 -0.98 0.02 -1.95 -0.55 -0.27 - 0.12 -0.39 -0.08 -1.68 -0.66
Mp4g05620.1 (DEI1)
 - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - -
0.07 2.64 - - - - - - - 2.24 - 3.32 2.4 - - - - 1.34 - 1.13 - - - - - - - - - - - -
Mp4g07050.1 (RNR2)
 -0.57 -1.16 - - - - 1.39 0.19 0.03 - - 2.9 0.7 - - 0.88 -0.19 3.13 -0.65 -1.74 -1.83 - 1.72 - - -0.68 - - - - -1.24 -
- - - 3.26 - - - - - - - 3.59 2.44 - 2.31 - - - - - - - - - - - - - - - - -
Mp4g09880.1 (MYB85)
 - - - 3.98 - - - - - - - - - - 4.02 - - - - - - - - - - - - - - - - -
Mp4g11000.1 (GTG1)
 - - 2.55 - - - - - 2.0 - - 2.37 -0.05 1.59 -0.31 1.77 - - 0.86 - - - -0.15 -0.12 -0.18 - - 0.88 0.09 0.44 - -
Mp4g12290.1 (CYP81D11)
 -0.43 - -1.33 -0.01 -0.82 -1.7 -1.6 - -1.8 1.27 0.47 1.13 -0.83 -1.76 0.28 2.1 0.56 1.13 0.91 1.04 -1.03 -0.74 -0.85 - 1.48 -1.89 0.79 - -0.73 0.11 - -1.59
- 3.05 - - - - - - - - - - - - 4.26 2.17 - - - - - - - - - - - - - - - -
Mp4g15550.1 (TATA)
 - - - - - - - - - - - - - - - 3.09 2.24 2.32 - 3.23 - - - - 2.14 - - - - - - -
-1.63 1.55 -0.45 0.13 - - 0.37 - - - - -0.72 0.81 - 2.87 1.19 1.06 - - - 0.91 - - - 1.07 0.05 -0.77 - - 0.46 1.96 -0.54
- - 3.15 - - - - - - - - 3.63 - - 2.4 2.44 - - - - - - - - - - - - - - - -
Mp5g06290.1 (OMT1)
 -0.05 0.8 - - -0.68 - 2.44 - - - - 2.79 -0.55 - -0.9 - - 2.8 - - -0.88 - 2.81 - - -0.79 - - - - - -
Mp5g07810.1 (GGL2)
 - - 4.17 - - - - - - - - 3.81 - - - - - - - - - - - - - - - - - - - -
- 1.32 - - - - - - - 0.81 0.88 3.08 - - 0.69 3.09 - - - - - 0.79 - 1.82 - - - 1.03 - - - -
Mp5g12290.1 (EDM2)
 -2.39 -1.05 1.85 0.62 -0.45 1.53 -1.25 -0.28 - 2.14 -0.44 -1.44 -1.52 1.17 -0.1 0.95 0.42 -1.51 1.0 0.71 -0.81 -1.45 - -0.53 0.97 -0.01 - - - - - -1.19
0.48 -0.46 1.26 -0.04 -1.0 1.42 -0.74 -0.96 1.43 1.06 -0.64 -2.6 -1.65 0.02 -0.08 -0.26 -0.85 -2.68 -1.71 -0.48 -1.97 -0.29 - -2.55 1.47 -0.42 0.93 -0.11 0.04 0.75 -0.16 -0.74
- - - - - - - - - - - - - - 3.73 - - - - - - - 1.92 - - 1.82 - 2.91 - - 1.98 -
- - 3.78 - - - - - 1.06 1.51 - - - 1.07 - 1.36 - - -0.01 - - 1.1 0.94 - - - - - - - 1.83 -
Mp6g01820.1 (LNO1)
 - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - -
Mp6g03800.1 (PEX1)
 - - - 2.1 - - - 1.5 1.41 - - 1.25 - - - 2.83 - 1.31 2.31 - - - - 1.38 - - - 1.44 - - - -
0.79 - 3.04 0.56 -0.25 -0.16 -0.86 - -1.22 -1.41 - - - - 0.46 1.21 -0.5 0.69 -1.38 0.11 -0.54 0.24 2.25 -1.34 - - - 0.64 - - -1.2 -0.03
Mp6g08640.1 (CIP4)
 0.68 - 2.05 1.73 - 1.09 - - - 0.88 0.95 - 0.89 - 0.68 -0.32 1.33 -0.09 - 1.37 - 0.96 - -0.01 -0.15 -0.17 -0.01 - 0.06 - - -
Mp6g12930.1 (FANCM)
 -1.18 1.13 2.05 - -0.17 -0.28 0.47 -0.19 -0.03 1.3 - 0.83 - 1.85 - 0.73 - -0.4 -0.18 -0.34 - - - 0.8 1.24 - - -0.32 0.66 -0.04 -0.19 -
Mp6g18110.1 (RKFL2)
 -0.05 -0.68 -0.56 -1.1 -0.89 -0.69 0.9 -0.19 0.31 -0.69 -0.86 2.18 -0.74 0.37 -0.75 0.81 -0.88 1.8 -1.72 -1.09 -1.47 0.68 0.79 -0.92 -1.06 -1.31 -1.52 -0.11 -0.27 -0.77 -0.43 -0.25
Mp6g18170.1 (ATBM1C)
 - 1.09 - 1.24 1.66 1.51 - - - 0.3 - - 0.47 - 3.67 0.45 0.3 - - 0.31 - - - - 1.23 - - - - - - -
- - - - - - 3.78 - - - - - - - 4.19 - - - - - - - - - - - - - - - - -
-0.35 -0.36 -0.7 0.1 -0.53 -0.81 0.51 -1.77 - -0.63 -0.62 0.84 -1.3 -0.82 -0.11 1.73 -0.05 -0.35 0.86 0.14 -0.83 0.72 0.07 -0.26 0.89 0.5 0.36 -0.04 -1.03 0.12 -1.01 0.16
Mp7g02130.1 (CHR23)
 - - - - - - - - 0.21 3.02 0.15 1.2 0.06 - 2.24 0.99 -0.09 0.09 - - -0.17 - - - 1.59 - - 1.69 - 0.33 0.22 -
Mp7g03850.1 (PGP17)
 -0.26 -0.29 0.8 -0.29 -0.4 0.3 0.8 0.25 0.57 -0.18 -0.49 0.58 -1.64 0.52 -0.4 0.22 -0.54 0.08 -0.7 0.16 0.78 -0.48 0.27 -0.44 -0.69 0.29 -0.44 -1.72 -0.68 0.34 0.39 -0.61
0.05 0.67 - 0.81 - - 2.24 -0.38 1.51 2.69 - -0.49 -0.51 - -0.83 - 0.84 - -0.64 - 0.12 0.48 - - -0.71 -0.73 -0.55 - -0.24 0.63 -0.41 -0.23
-1.47 -0.09 1.65 - 0.52 -0.53 1.07 - 1.06 - -0.67 -0.54 - - - 0.36 - - 0.39 -0.76 -0.78 1.75 1.69 - 0.87 - 1.52 - 0.8 0.74 -0.51 -0.38
Mp7g14870.1 (RHM3)
 -0.73 -0.58 -1.3 0.44 0.09 0.2 1.79 -1.86 0.74 -1.01 1.31 0.17 0.6 -0.31 1.86 -0.49 -0.54 0.83 -2.06 0.72 -2.21 -0.86 0.99 -0.89 -2.15 -0.0 -1.92 -1.81 -0.23 - -1.81 -
1.47 - - - - - - 0.78 - 2.63 - 3.45 1.71 0.83 - 2.42 - - - - - - - - - - - - - - - -
- - - - - - - - - - - 3.58 - - - 3.23 - - - 3.42 - - - - - - - - - - - -
-1.07 - 0.98 -0.46 -0.79 -1.69 -1.41 1.3 -1.83 0.61 0.89 2.54 0.13 0.78 -0.47 -1.08 0.25 0.9 -1.99 -1.03 - -0.23 0.89 0.73 -0.42 0.39 - - - -1.37 - -0.02
Mp8g03390.1 (SETH1)
 0.71 1.99 - - - 1.59 - - 1.56 3.03 - 2.7 2.52 - - - - - - - - - - - - - - - - - - -
Mp8g04730.1 (CYP21-2)
 - - - - - - - - - - - 4.13 - - 3.85 - - - - - - - - - - - - - - - - -
Mp8g04740.1 (CYP21-2)
 - 2.08 - 1.74 - - - - - - - 3.51 - - 2.62 2.78 - - - - - - - - - - - - - - - -
-0.65 -1.85 1.07 0.13 -0.27 -1.91 0.13 -1.8 -1.74 -2.41 -1.0 0.58 -3.31 0.11 0.65 1.33 -0.11 -0.23 0.37 0.5 -0.23 0.54 1.0 0.61 0.17 0.55 0.01 0.0 -0.57 -0.16 -0.03 -2.15
Mp8g13290.1 (SCL8)
 -0.75 -1.23 1.81 -0.14 1.31 0.59 1.2 -1.32 - 0.74 1.48 2.08 -0.54 - -0.66 1.95 - - - - - 1.83 -0.57 -0.41 -1.6 -1.65 - - -1.49 - - -
Mp8g16700.1 (TXND9)
 - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - -
0.02 - 2.31 -0.38 - -0.09 - 0.94 - - -0.12 1.93 1.5 - -0.29 2.08 - -0.15 - - - - -0.13 -0.07 - - 0.9 0.87 - 0.16 1.14 -
Mp8g18450.1 (AMT2)
 - - - - - - 2.81 2.03 - 2.09 - 2.21 2.1 - 2.96 - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.