Heatmap: Cluster_88 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 260 uE m-2 s-1
Light: 195 uE m-2 s-1
Light: 130 uE m-2 s-1 (Control)
Light: 65 uE m-2 s-1
Photoperiod: L24
Photoperiod: L18D6
Photoperiod: L13D11 (Control)
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C (Control)
Temperature: 25°C
Temperature: 30°C
- 1.79 - - - - - - 1.87 - - - - 3.09 - - - - - 2.91 - - - - - - - 2.78 - -
1.48 - - - 2.28 - 1.33 - 1.35 - - - - 3.61 - - - - - - - - - - - 1.24 - 1.43 - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
-1.53 -0.08 1.0 0.39 1.51 0.87 0.23 - -6.02 -0.13 -4.87 - 1.96 - 0.18 1.24 0.62 -0.9 -3.12 -1.05 0.93 0.41 0.15 - -0.95 -23.96 -1.17 -0.29 0.2 0.34
- - - 1.77 - - 1.99 - - 2.19 2.43 - - - - - - 3.04 - - - - - - - - - 2.15 - -
- -5.08 - 1.32 1.85 1.8 - - - 2.12 - - - - - - - - - - - - 1.96 - - - - 1.57 2.33 2.04
0.79 -1.95 -0.54 0.84 -2.24 0.19 -0.93 1.6 1.11 -0.45 -0.39 0.15 -0.43 -3.19 -0.87 -2.02 0.24 - -0.21 0.99 -0.64 -1.69 -0.4 -1.44 0.87 -0.2 0.46 -0.29 0.52 0.83
- - 3.07 - - - - - - - - - - 3.84 - - 2.86 - - - - - - - - - - - - -
0.34 0.45 -0.61 - -0.71 -0.94 - 0.39 0.28 - -0.54 -0.82 -0.65 1.98 1.46 1.96 -0.81 0.08 - 2.15 - -0.94 - - 0.1 - 0.71 - - 0.36
-1.57 0.14 -0.14 0.66 -0.84 -1.81 -1.64 0.74 1.66 -0.08 -0.41 -0.15 0.27 - - -0.01 0.54 0.42 0.34 -1.52 -2.42 -0.63 - -2.59 1.12 0.56 -0.22 0.91 -0.01 1.32
- 1.23 0.15 1.58 - -0.08 - 0.21 - 1.03 - 1.62 - -0.03 - - 2.49 1.88 - - -0.29 - - - 1.03 - - 0.11 1.07 -
-2.9 0.72 -0.35 -0.7 -0.99 -3.14 -2.69 -0.63 0.29 0.66 -0.69 -0.23 -0.57 0.36 -0.14 0.77 1.13 1.67 -1.51 -2.07 0.51 -1.3 -0.37 -0.02 0.52 0.23 0.38 0.85 -0.31 -1.04
1.0 - -0.77 -1.13 2.26 -0.49 -1.24 -6.93 - 2.17 0.04 - -2.27 3.14 -0.03 - - -8.66 -0.36 -4.49 -1.41 - 0.98 - -0.44 - -2.5 - -1.63 0.06
Spov3_C0058.00025 (MAPKKK14)
- - - - - 3.84 - - - - - - - 3.97 - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - 2.26 - - - - 2.53 - 3.22 - 3.34 - - - - - - - - - - - - - - - -
1.52 1.41 - - - 1.12 2.07 - - 2.21 - 2.14 - 2.15 - - - - - - - - - - 1.07 - - 1.34 - -
- - - - - - 3.26 - - - - - - 4.35 - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
-0.36 - -0.56 0.04 - -0.76 - -0.48 1.45 2.12 - 0.94 -0.45 -0.48 -0.63 1.42 -0.68 0.76 0.45 1.17 - - 0.47 0.61 -0.77 - -1.05 -0.5 0.26 -0.67
0.24 -0.12 0.25 -0.48 0.71 -0.17 0.39 0.13 -0.17 0.14 -0.03 -0.1 -0.31 0.27 -0.28 -0.28 -0.15 -0.43 -0.28 -0.09 0.39 0.18 0.44 -0.3 0.18 -0.18 0.17 -0.37 -0.3 -0.43
- - - - - - - - - 4.32 - - - - - - - - - - - - - - - - - - - 3.33
0.32 0.34 -0.26 0.64 -0.06 0.06 -0.07 0.08 0.11 0.39 -0.39 -0.93 -0.17 -0.16 -0.53 0.27 0.02 0.34 -0.64 0.17 -0.06 -1.01 0.17 -0.02 -0.88 -0.48 -0.97 0.43 0.25 0.83
- 0.7 -1.24 -0.17 -0.87 -0.84 -2.27 0.96 0.89 -1.14 - 0.51 0.68 0.42 -0.34 1.23 0.67 0.75 -1.3 0.22 -2.62 -1.48 0.84 -2.4 -0.37 0.27 0.12 -0.12 0.59 0.23
- 0.41 2.33 1.33 - - - - 1.31 2.59 1.31 - - 1.19 - - 2.42 - - - - - - 0.19 - - - - 0.46 -
Spov3_chr1.03248 (AtHMP25)
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
0.41 0.23 0.13 - 0.26 0.09 -1.07 -0.42 -1.76 -1.94 -1.76 -2.05 0.83 0.12 1.12 -0.4 0.36 -1.0 0.83 0.63 1.02 -1.04 -0.93 -0.93 -0.82 0.69 1.11 1.2 - -0.45
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - 1.13 1.11 - - - 2.15 - 3.62 - - - - - - 2.0 - - - - - - - - - - 2.31 - -
- - - - - - - - - 4.3 - - - - - 3.36 - - - - - - - - - - - - - -
0.46 - -0.91 0.94 0.51 -1.95 -0.82 1.33 -0.24 0.17 0.63 - 0.33 -0.63 0.62 -1.65 -1.71 0.99 - -0.95 0.35 -1.05 1.01 -1.98 -2.0 0.7 0.62 -1.71 - 1.84
1.04 -0.87 -0.15 - 0.87 -0.47 0.77 0.53 0.22 0.91 -0.1 -0.48 -1.54 0.02 0.29 -0.17 0.04 -0.96 -0.47 -1.49 0.38 -1.24 1.08 -3.22 -0.43 -1.01 1.06 -1.55 0.7 -0.36
-0.02 1.06 - - - -0.12 0.34 - - - - - 1.1 3.1 - - - 2.06 - 2.51 - -0.45 - - -0.15 - -0.33 - - 0.79
-0.22 -0.0 0.64 0.43 -3.41 -1.92 -1.83 1.38 1.1 0.17 0.07 0.05 -0.68 -0.26 -1.48 -0.23 0.11 -0.06 -2.41 0.29 -0.4 -1.59 0.16 -0.9 0.68 0.21 -0.46 -0.06 0.84 0.61
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.2 - 3.54 - - - - - - - - - - - - - - - - - -
0.03 0.06 -0.88 0.94 0.36 -0.64 -0.52 0.23 0.24 -0.93 -0.5 -2.33 0.95 -0.15 0.36 0.83 -0.58 0.68 -1.03 -0.98 -0.12 -2.29 0.66 0.0 -1.24 0.09 -0.15 -0.24 -0.24 1.07
0.03 0.06 -0.88 0.94 0.36 -0.64 -0.52 0.23 0.24 -0.93 -0.5 -2.33 0.95 -0.15 0.36 0.83 -0.58 0.68 -1.03 -0.98 -0.12 -2.29 0.66 0.0 -1.24 0.09 -0.15 -0.24 -0.24 1.07
- - - - - - - - - 4.69 2.04 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 3.51 - - - - 3.44 - - - - - 2.94 - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.03 - - - - - - 3.77 - - - - - - - - - - - - -
-1.07 0.67 1.29 -1.19 -0.03 1.01 - 1.41 0.87 0.06 -1.1 - -0.24 0.69 -0.41 - 0.33 1.23 -1.34 -0.46 -1.49 -0.94 -2.13 -0.84 0.15 -2.25 0.54 0.79 0.64 -1.3
- - - - 2.7 - - - - 2.93 2.15 1.95 - 1.87 - - - - - - - - - - - - - - - 1.96
0.24 1.31 1.64 -0.72 - 1.83 - - 1.1 - 0.86 - 1.36 -0.61 - - - 2.07 - - - 0.04 - -0.91 - 0.15 - 1.06 0.85 0.18
- - - - - - - - - 4.52 - - - - - - - 2.81 - - - - - - - - - - - -
- - - - - 2.5 2.82 - - - - - - 3.52 - - 2.54 - - - - - - - - - - - - -
- - - - - 3.24 - - - 3.4 - - - 3.33 - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
0.91 0.98 -0.29 -0.34 -0.51 0.28 -1.17 -0.78 0.69 0.6 -0.17 0.76 0.26 -1.21 -0.35 -0.38 0.2 -2.45 0.01 0.43 -0.32 -0.82 -0.7 -1.11 -0.6 0.92 -0.22 0.11 -0.78 0.56
- - - - - - - - - - - - - 3.72 - - - - - - - - - - - - - 4.08 - -
- - - - - 2.35 - - - 3.61 - - - 2.7 - - 2.64 - - - - - - - - - - - - -
- - - - - 2.8 - - - - - - - 3.83 - - - - - - - - - - - - - - 3.14 -
- -0.53 - 0.24 -0.65 0.72 1.0 - 0.38 - -0.62 0.26 -0.61 3.23 -0.71 - 1.94 0.76 - 1.24 0.58 - - - - - -3.9 - -0.71 -
- - - - - - - - - 3.84 - - - - 2.77 - - 2.67 - - - - - - - 1.31 - - - -
0.38 -0.43 - 1.68 -0.65 -1.01 -0.64 -1.49 - 2.37 -0.27 -1.4 - -0.23 -0.53 2.13 0.65 - 1.32 - - - -0.74 0.33 - 0.84 - 0.59 -0.86 -0.82
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
-1.95 0.14 -0.3 -0.07 0.84 -0.48 -0.83 0.32 -2.07 -0.0 -0.42 -0.83 -0.6 -0.24 -0.84 0.14 0.5 -0.25 0.38 0.89 -0.2 0.09 -0.02 0.45 0.57 -0.21 -0.62 -0.07 0.4 0.93
- - 1.32 -0.04 1.12 1.07 - - - 1.21 0.31 - 1.9 1.3 0.07 2.63 - 0.0 - - 2.09 - - - - - - - - -
- - 1.69 - - - - 1.75 - - - - - 3.79 1.45 - - - - - - - - - - - - 1.81 1.75 -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
0.4 -0.65 0.19 -1.69 -0.03 -0.32 -0.91 -0.71 -0.9 0.26 -0.14 -0.09 0.11 0.24 0.14 0.04 0.4 -1.25 1.02 -0.0 0.3 0.6 0.1 -0.03 -0.44 -0.55 -0.09 0.15 0.63 0.17
- - - - - 2.79 - - - - - - - 3.93 - - - - - - - 2.97 - - - - - - - -
-2.2 0.38 -0.19 -0.55 0.87 -2.59 -1.33 -0.4 -2.28 -0.35 -2.35 0.15 0.17 0.52 -0.13 - 1.08 0.07 0.61 -0.13 0.78 0.58 -0.44 0.59 - 0.27 0.68 0.93 -0.23 0.46
- 2.41 - - - - - - - - - - - 4.15 - - 2.32 - - - - 0.92 - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
0.8 1.48 -2.93 -1.51 -0.78 0.03 -3.28 2.05 -0.89 1.39 0.34 -1.53 0.68 - -3.19 -0.78 2.24 -2.08 -2.93 - -1.88 -3.08 0.68 -0.18 - 0.17 -1.26 -1.87 -1.32 0.91
- - - - 2.09 0.67 - - - 2.18 - 0.86 - - - - - 0.99 - - - - 1.9 -0.42 - - - - 2.58 2.42
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
-18.19 -17.24 - -19.85 - -22.78 - - - - -0.88 - - 3.85 -18.33 - - - -20.1 - -17.7 - 1.66 - - 1.24 -24.39 3.07 - 0.16
Spov3_chr4.03597 (AtHMP11)
0.82 0.52 -0.66 -0.37 0.86 -1.62 0.31 -0.22 -1.31 -0.28 0.31 0.29 -1.42 0.67 0.65 -0.38 -0.03 -0.22 -0.21 -0.8 0.23 0.38 0.93 -0.79 -1.99 0.73 -0.43 0.01 -0.83 -0.48
- - - - - - - 2.47 - - - - - 3.62 - - - - - 2.64 - 2.56 - - - - - - - -
- - - - - 3.07 2.42 - - 3.16 1.06 - - 0.89 0.74 - - - - - - - - - - 0.78 - - - -
Spov3_chr5.02112 (AtHMP06)
0.26 1.01 -0.05 -0.2 -0.09 -0.03 -0.19 -0.47 0.37 -0.13 0.01 0.25 -0.85 0.3 0.14 0.37 -0.41 -0.78 -0.13 -0.06 0.21 -0.12 -2.26 -0.73 -0.27 0.52 -0.28 0.26 0.2 0.43
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
1.0 0.13 0.79 -0.25 -0.48 0.43 -0.13 0.29 0.28 -0.93 -0.41 0.07 0.6 0.98 0.61 -0.65 0.05 -2.32 1.39 -2.25 0.39 -0.67 -0.65 - -1.67 -0.21 0.57 -2.84 -0.45 -0.38
1.3 0.57 1.71 - 2.21 1.14 -0.7 -1.45 - -0.58 - -0.27 1.53 - -0.3 - - -0.19 - -0.14 - 0.2 0.97 - 0.42 - 0.09 -0.27 - 0.75
0.32 0.43 0.37 - - - 0.25 - - - - 1.22 0.23 3.35 2.46 1.24 - - - - - 1.01 - 0.42 - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
Spov3_chr5.03697 (CYP72A7)
1.71 -0.0 - - - - - - -0.12 -0.09 1.06 - - 3.39 -0.26 -0.03 - 1.26 1.62 - - - -0.28 - - - - 1.16 - -0.04
-0.29 0.31 0.02 - 1.32 0.43 -1.21 - - 1.38 -0.25 - 1.78 0.85 0.87 0.77 -0.24 0.79 -1.42 0.1 0.13 - -1.49 - - 0.23 -1.56 0.36 0.52 -0.38
2.73 - 1.03 - - - - - - 0.85 1.88 2.81 - 2.78 - - - - - - - - - - - - - - - 0.95
0.12 0.28 0.78 - 1.55 1.95 - - 0.46 0.19 0.2 - 2.28 - - 1.31 0.19 1.07 - -0.21 1.04 - - -0.09 - 0.11 - - - -
0.04 0.6 -1.31 0.41 0.77 -0.32 - 1.28 -0.08 0.33 -1.08 - - -0.26 -0.3 -1.11 2.01 0.92 0.89 - - -0.45 -0.21 -0.3 -0.39 0.17 - - -1.06 1.77
- - - - - - - - - 4.07 3.72 - - - - - - - - - - - - - - - - - - -
0.21 0.52 0.11 -0.02 -0.2 0.11 -0.31 0.3 0.04 -0.33 -0.14 0.12 -0.23 0.34 -0.09 0.14 0.12 -0.1 -0.01 -0.28 0.03 -0.24 -0.39 -0.53 -0.33 0.1 0.0 0.21 -0.08 0.31
- - - - - - - - - 3.59 - - - - - - - - 2.38 - - 1.1 - 2.46 2.37 - - - - -
-0.44 0.51 0.15 0.09 0.33 -0.34 -0.02 0.55 0.14 -0.3 -0.66 -0.34 -0.68 0.08 0.17 -0.61 0.45 0.86 -0.11 -0.09 0.03 -1.35 -0.45 -0.32 0.25 0.04 -0.42 -0.1 -0.07 0.6
0.46 0.74 0.11 -0.3 -0.02 0.06 -0.04 0.53 -0.02 0.11 -1.05 0.44 -0.14 0.75 -0.01 0.5 -0.01 -0.18 -0.02 -0.34 -0.29 -0.71 -0.92 -1.0 -0.37 0.18 -0.55 0.26 -0.03 -0.26
0.42 0.75 0.09 -3.34 -0.29 -2.56 -0.77 -0.91 -0.14 -1.99 0.54 -0.94 -0.2 0.19 0.48 -0.32 -0.01 -0.82 0.55 -0.48 0.65 0.3 0.18 0.55 -0.68 0.46 0.47 0.05 0.67 0.3
-1.77 - -0.9 - 1.9 1.27 0.74 -2.0 -0.96 1.5 -0.68 -1.95 - 0.99 0.86 -0.05 -1.95 - 1.11 -2.0 0.41 -0.54 2.04 - -2.05 -0.35 -0.65 - -0.21 -0.36
-0.42 0.53 0.17 0.11 0.35 -0.32 -0.0 0.57 0.16 -0.28 -0.64 -0.32 -0.67 0.1 0.19 -0.59 0.47 0.88 -0.09 -0.07 0.05 -1.33 -0.43 -1.31 0.27 0.06 -0.4 -0.08 -0.06 0.62
- - - - - 3.01 - - - 4.15 - - - - - - - - - - - - - 2.06 - - - - - -
- - 2.01 - - - - - - - - 2.83 - - - - - - - - - 2.28 2.69 - - - - - 2.0 1.83
- - - - - - - - - 3.97 - - - - - - - 3.84 - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
0.31 0.58 -0.37 -0.8 0.42 0.99 -0.42 0.56 0.16 -0.61 -0.62 -0.89 1.16 0.58 -0.35 0.48 0.26 0.32 0.99 -1.07 0.47 -2.06 -0.35 -1.99 - - 0.44 0.57 -0.23 -2.05
0.22 - 0.36 1.91 - - - 1.26 - 3.02 1.51 1.41 1.62 - - - - - - - - - - 0.3 0.43 - - - 0.1 0.08
Spov3_S01.00185 (NAC097)
- - 1.86 -1.2 1.31 - -0.42 - - 1.42 1.05 -2.29 1.35 -3.78 - -0.39 -1.47 0.85 1.48 1.32 1.25 -0.09 - 0.92 -1.53 -1.07 - -3.3 -1.86 -0.94
- - - - - - - - - 4.44 - - - - - - - - - - - - 3.05 - - - - - - -
0.09 0.42 0.09 -0.64 -0.14 0.15 0.07 0.18 -0.22 0.26 -0.05 0.11 0.08 0.0 0.18 0.24 0.06 -0.24 -0.1 0.22 -0.3 -0.24 -0.62 -0.12 -0.23 0.38 -0.09 -0.01 -0.34 0.16
0.37 -0.43 -0.48 - 2.29 1.23 0.18 -0.48 0.33 0.97 0.42 - - -0.54 0.87 0.52 - -0.82 - - 0.91 -0.28 0.79 - 0.29 - - 1.07 - 0.44
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.