Heatmap: Cluster_419 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001941 (MYB305)
- 2.29 2.2 - -1.37 - - - 0.36 -1.32 -0.51 - -1.1 0.59 1.68 - - -1.09 -0.18 0.72 - - 0.24 1.42 - - 0.42 -1.14 1.63 0.42 -1.07
Bra006950 (SNC2)
- 2.51 2.5 - 1.47 -0.4 -0.69 -0.51 - - - - -1.35 - -0.11 -1.1 - - - - -1.12 - -0.17 1.94 0.62 - 0.62 -0.01 0.49 0.48 -0.11
Bra018608 (SIA1)
2.39 3.03 - 2.0 - - - - - - - - 1.42 - 2.68 - - - - - - - - - 1.14 - - - - 1.21 -
Bra020061 (TUA3)
1.02 0.97 0.13 0.22 -0.13 -1.56 -0.51 -0.29 -0.54 -0.08 -0.09 -0.11 1.06 -0.35 0.29 -1.06 -1.05 -0.43 -0.36 -1.56 -0.83 -0.71 0.55 -0.29 0.15 0.54 -0.11 0.39 0.19 0.13 0.11

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.