Heatmap: Cluster_96 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 260 uE m-2 s-1
Light: 195 uE m-2 s-1
Light: 130 uE m-2 s-1 (Control)
Light: 65 uE m-2 s-1
Photoperiod: L24
Photoperiod: L18D6
Photoperiod: L13D11 (Control)
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C (Control)
Temperature: 25°C
Temperature: 30°C
- - - - - - - - - - - - - - - - 3.84 - - - 3.31 - - - 2.54 - - - - -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
- 0.62 - - -1.36 - -0.06 - -1.17 0.06 -0.94 -0.09 0.57 - 0.85 0.66 2.03 -0.25 0.31 0.79 - 0.26 1.66 - -1.05 -1.18 1.03 1.14 - 0.91
- - 1.42 - 2.07 - - - - 0.82 0.19 - -0.04 - 1.23 - - 1.61 - -0.34 - - - - - - 0.63 0.08 1.92 2.73
0.43 0.49 -0.1 -1.37 -0.09 -0.35 0.26 0.43 -0.42 -0.41 0.19 0.07 -0.56 -1.87 0.38 -0.27 1.01 -0.91 -0.76 0.14 -0.96 -0.95 1.07 -0.26 -0.83 0.25 -1.78 0.7 0.15 0.94
- 2.16 - - - - - - - - - - - - - - 3.84 - - - - - - - - - - - - 3.48
- - - - - - - - - - - - - - - - 4.53 - - - - - - - - 2.78 - - - -
1.09 -0.02 - - 2.2 - - - - - -0.07 -0.19 - 0.05 - - 0.05 0.74 - - 0.55 -0.3 2.2 1.38 - - - - 1.49 2.14
0.06 -0.63 -0.59 -1.1 0.34 -0.53 -0.5 -0.64 -0.44 0.57 0.25 -0.66 -0.12 0.59 1.01 0.3 0.25 0.39 0.48 0.27 -0.64 -0.57 0.41 -0.83 -0.97 -0.14 0.18 -1.81 0.44 0.71
- - - - 2.57 - - - - - - - - - - - - - - - 1.14 - 3.2 - - - - - 3.31 1.46
- - 2.31 - - - - - - - - - - - - - 4.65 - - - - - - - - - - - - -
-0.85 0.38 -0.77 -2.51 0.29 0.73 -0.29 -2.3 -0.31 -0.29 0.34 -0.45 -0.04 0.63 1.28 -0.01 0.52 -0.53 1.24 0.02 -2.02 -1.35 0.71 -0.08 -1.45 0.3 0.38 -1.22 -0.54 0.21
- 0.44 0.14 1.21 -0.02 - - - 0.31 - - 0.27 - - - 1.89 2.38 - - - - 1.18 0.1 - 2.09 0.31 0.37 0.53 0.39 -
- - - - - - - - - - - - - - - - 4.59 - - - - - - - 2.55 - - - - -
-0.65 -0.6 - 1.0 2.42 0.7 - 0.42 - -0.63 0.33 - - - - 0.92 1.66 -0.9 - -0.52 - - - 0.86 -0.91 -0.83 0.64 1.09 -0.67 1.57
- - - - - - - - - 3.9 - - - - - - - - - - - - - - - 3.91 - - - -
Spov3_chr1.01605 (EXO70H5)
- - - - - - - - - - - - - - - - - - - - - - - - - - - 3.87 3.95 -
- - - - - - 0.01 1.39 - - -0.22 - 0.26 0.44 - - 0.71 1.69 0.66 0.69 0.83 -0.89 -0.85 -1.03 -0.39 0.75 - - 2.35 2.0
- - - 2.6 - - - - - - - - - - - - 4.58 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
-0.07 -0.45 0.52 -0.3 0.15 0.3 0.45 0.25 -0.85 0.52 0.48 -0.02 -0.32 0.73 0.25 0.16 0.04 -3.63 -0.38 -0.99 -2.49 -0.19 0.25 0.09 -1.24 0.94 -1.22 0.38 -0.62 0.7
0.18 0.39 0.04 0.08 -0.74 0.68 -1.66 0.71 -1.58 0.35 -0.1 -0.96 0.34 0.36 0.86 -0.49 -0.32 0.65 -0.35 -0.22 0.4 -0.97 0.86 -0.65 -0.8 -1.87 -0.47 -1.17 -0.21 1.01
- 1.84 0.77 - - - - - - 1.71 0.8 1.58 - - - - 1.58 - - - - 0.41 - - - 3.19 0.74 0.72 - -
-1.35 -0.61 -0.01 -0.44 -0.11 -0.85 1.34 0.77 -1.29 0.44 0.53 -0.13 0.17 -3.16 0.64 -0.38 -1.5 -0.92 1.05 -0.23 0.47 0.38 0.82 -0.55 -0.45 0.25 -0.05 -0.91 0.11 -1.46
- - 3.27 - 3.11 - - - - - - - - - - - - - - - - - 3.55 - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 3.32 4.32 -
- 3.32 - - - - - - - 2.18 - - - - - - - - - - - - - - - - - 3.95 - -
-1.25 -0.2 -1.2 -1.18 1.64 -0.53 0.28 -1.14 0.88 0.31 -1.32 -1.41 -0.32 -1.31 -1.43 0.3 -1.24 0.1 -1.37 -0.65 - 0.2 - 1.7 -0.3 -0.42 -0.47 -0.12 0.77 1.95
- 0.65 - - - - - - - 3.1 - - - - - - 3.6 1.88 - - - - - - - - - - - 2.02
0.05 0.06 0.15 -0.04 -0.19 -0.86 -0.54 0.11 0.49 0.23 0.11 -0.05 0.18 -0.46 -0.33 0.02 -0.54 0.12 -0.15 0.66 -0.09 -0.32 -0.87 0.07 -0.03 0.29 -0.17 0.02 0.01 0.71
0.02 0.09 -0.04 -0.04 0.08 -0.03 0.03 0.2 -0.27 -0.01 0.09 0.03 -0.1 -0.27 0.4 0.0 0.26 0.01 -0.11 -0.44 -0.09 0.02 0.15 -0.1 -0.24 0.04 -0.13 0.15 0.05 -0.03
- - - - - - - - - - - - - - - - 3.44 - - - - - - - - - - - - 4.26
3.43 - - - - - - - - - - - - - - - 4.26 - - - - - - - - - - - - -
Spov3_chr2.01060 (CYP87A2)
-0.42 0.24 -1.42 -1.23 -0.28 0.82 -0.45 0.44 - - 0.67 - -0.52 -0.15 1.26 0.39 0.8 0.06 - -0.51 0.25 -1.54 1.7 0.24 -1.36 - 0.86 -0.03 1.19 -0.4
- - 1.77 - - - 2.07 - - - - - 2.04 - - - - - - - 2.46 - - - - - - - 3.67 -
- 1.95 - - 0.16 - - - - 2.52 - - - - - - 3.33 - - - - - - - 2.17 - 1.83 - - 0.22
- -1.22 -1.33 - -1.42 0.76 0.56 0.74 0.46 -1.47 -1.3 0.47 -1.43 1.22 1.28 0.31 1.52 - -1.71 -0.08 -1.45 -0.68 1.6 - - 0.31 0.22 - 0.7 0.92
0.86 - - - - - - - - - 2.8 - - - - - 3.4 3.11 - - - - - 1.04 - - - - - -
- - - 0.78 2.1 - 0.57 - 1.6 - - - - 1.38 - 0.54 1.51 - - 0.63 1.35 - - - 0.72 - 0.34 - 2.48 -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
- - 3.22 - - - - - - - - - - - - - - - - - - - - - 2.29 - - 2.42 2.54 2.21
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
0.51 -1.52 -1.21 -0.18 0.3 -0.54 -0.41 0.7 -0.7 0.03 -0.08 -1.04 0.82 0.82 -0.72 -2.92 -0.37 0.62 -1.29 -0.76 0.55 0.03 -2.04 0.14 0.11 -0.78 -0.05 0.26 0.69 1.43
-1.67 0.1 1.59 -1.59 -0.14 0.26 0.07 -1.53 - 0.98 - 1.31 0.23 0.47 -0.51 - 0.64 -0.67 -1.72 - -0.46 -1.48 0.9 - -0.4 2.28 - 0.84 - 0.28
Spov3_chr2.05226 (Hsp70-15)
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
0.01 0.05 0.51 1.65 -0.27 -1.36 -0.33 1.34 -0.88 -1.18 0.04 0.35 -1.14 0.38 - - 0.5 -1.31 - -1.28 -0.15 - 0.72 0.54 1.75 0.6 - -0.87 -1.12 0.74
1.04 - 0.88 - - - 1.17 - - - - - 1.14 0.87 - - - - - - - - - 0.88 - - 1.18 2.86 2.73 0.87
2.63 - - 3.57 - - - - - - - - - - - - 2.77 - - - - 2.36 - - - - - - - -
-0.2 1.17 0.61 1.16 1.54 0.2 -0.16 - -0.17 0.49 -1.27 - - -1.15 - - -0.17 -1.44 - -1.41 -0.47 - - 0.84 -0.8 -1.36 - 2.28 0.43 1.88
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
0.77 0.49 -1.55 1.91 0.32 -0.2 -1.47 0.73 0.13 -0.68 - 0.27 -1.61 0.44 -1.7 0.47 0.5 -0.25 0.09 - - - -0.6 -0.77 -0.22 1.0 0.4 0.84 -0.58 0.24
2.42 - - 2.05 - - - - - 2.46 - - - - - 1.4 2.99 - - - - - - - - - - - - 2.14
- - - 2.39 - - - - - - - - - - - - 4.23 - 2.59 - - - - - - - - - - -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
-0.19 -0.18 -0.01 0.26 0.32 -0.19 -0.45 0.1 0.35 0.21 0.09 0.19 -0.02 -0.85 -0.2 0.1 0.05 -0.02 -0.37 0.07 -0.04 -0.23 -0.4 -0.17 0.2 0.12 0.14 0.02 0.05 0.37
-1.09 -0.93 - 1.86 -0.26 0.98 0.06 1.04 -0.12 - 1.59 0.43 - -1.23 - 0.89 1.57 -1.3 0.47 - -1.13 0.34 - -0.95 1.29 -0.08 -1.29 0.14 - -
0.42 -1.62 0.54 1.23 0.08 - 1.65 0.6 0.23 -0.72 -1.54 0.22 - -0.2 0.5 -1.63 0.95 - -0.33 - -1.73 -0.32 0.21 0.14 1.21 - -0.88 -1.45 0.69 1.0
- - - - 2.87 - - - - 2.9 - - - - - - 2.78 - - - - - - - - - - - 3.06 -
- 1.58 - - - - -0.15 2.44 - - - - - - - - 2.95 1.3 - 0.78 - - 0.42 1.35 - - - - 1.31 1.29
-0.08 - 0.68 1.19 - -0.63 0.77 -0.53 - 0.67 -0.25 - - 0.56 - -0.3 3.19 0.45 - - - - - - - -0.42 0.51 0.81 - 1.58
-0.58 -0.21 0.04 -0.71 0.31 -1.25 -0.78 -0.39 -0.2 -0.62 -2.48 -0.18 0.24 1.35 0.81 -1.64 1.59 1.82 -1.75 -1.82 -2.72 0.58 0.16 0.19 -1.27 -0.83 -2.88 -2.49 -0.34 1.22
-0.9 -0.31 0.37 1.18 0.9 -1.21 0.78 0.48 1.13 0.56 0.67 0.2 -0.99 0.4 0.67 -0.78 0.06 - - - -0.7 -0.67 1.1 -1.13 -2.21 0.19 -1.95 0.04 0.02 -0.4
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
- 1.5 - - 1.11 - - - - - - - - - - - - - - - 1.36 1.31 1.31 1.56 - - - - 3.86 -
0.2 0.28 -0.34 -0.57 -0.08 -0.11 0.4 0.25 -0.0 0.26 0.03 -0.09 0.5 -0.2 0.08 -0.36 0.53 -1.21 -0.76 -0.22 -0.23 0.01 0.28 0.0 0.13 -0.13 -0.56 -0.11 0.34 0.29
- 1.01 - -1.3 0.79 -1.52 0.55 -0.23 0.67 -1.58 1.32 -1.38 0.19 - - 1.72 - - 1.55 0.44 -0.06 1.06 -0.03 - -0.41 -0.75 0.42 0.25 -1.01 0.33
- 2.64 - - - - - - - - - - - - - - - 2.33 - - - - - - - 2.43 - - 3.74 -
- 1.89 - -0.77 - 1.36 -0.54 0.38 - - -0.35 - 0.53 0.52 2.0 0.52 1.22 0.33 - - - - 1.23 -0.33 - - 1.58 0.73 -0.56 -
1.61 - - - - 1.15 - - - - - - 2.29 - - - 2.99 - - - - - - - - - - - - 3.57
- - - - - - - - - - - - - - - - 2.04 1.73 - 2.77 - - - - - - - - 3.97 -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
2.26 - - - - - 3.31 - - - 2.34 - - - -11.83 2.3 - - - - - - 2.41 - - - - - - -
-0.59 -1.47 0.91 - 0.32 - - -0.27 1.65 0.1 0.33 0.38 -1.32 1.06 - 0.14 -0.01 0.88 -0.77 -0.03 0.49 - 0.19 0.67 - 1.77 - - -1.64 1.26
- - - 2.29 2.4 - 2.87 - - - - - - - - - 3.65 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 3.65 4.12 - - - - - - - - - - - - -
- - - 2.11 2.39 - - - 2.43 - - 2.31 - - - - 3.34 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
- - - 2.13 - - - - - - - - - - - - 3.83 - - - - - - 3.0 - - - - 1.74 -
- - 3.12 - - - - - - - - - - - - - - - - - - - 3.38 - - - - - 3.44 -
1.81 - 3.56 - - - - - - - - - - - - - - - - - - - - - - - - - 3.88 -
- - - - - - - - - 3.57 - - - - - - - - - - - - - - - - - - 4.18 -
0.79 2.11 - - 1.14 - 0.93 - -1.11 - - -1.46 1.0 1.72 -0.51 - 1.06 -0.54 -0.32 - 0.21 -0.61 0.27 - - -1.33 - - - 2.6
- -1.8 -1.76 -0.02 -2.19 -1.03 1.69 -0.15 -1.92 -0.88 0.8 0.02 0.88 0.73 1.15 0.18 1.48 - - - - -1.15 1.02 - 0.05 -1.17 0.1 -1.81 1.07 1.57
0.32 0.36 0.55 -0.45 0.09 0.07 -0.25 -0.19 0.01 0.92 -0.37 -0.24 -0.29 0.15 -0.45 -0.22 -0.11 -0.52 -0.18 0.04 -0.44 -0.52 -0.56 -0.31 -0.29 0.12 0.11 0.95 0.26 -0.27
-0.7 -0.81 -0.19 -1.44 0.42 -0.72 -2.71 0.07 -0.15 0.06 - -2.54 0.77 0.7 0.17 -1.52 1.62 0.27 -2.8 -1.17 0.86 0.32 -1.6 0.15 -0.35 0.56 0.05 -0.74 1.02 1.14
0.05 -0.06 -0.21 0.38 -0.45 0.13 0.14 0.14 -0.2 -0.89 -0.57 -0.03 -0.37 0.26 0.53 -0.14 0.29 0.53 -0.06 -0.05 0.38 -0.35 0.45 -0.27 -0.38 0.35 0.11 -0.6 -0.72 0.22
- - - - - - - - - - - - - - - - - - - - - - - - - 3.73 - - 4.06 -
- - - - - - - - - - - - - - - - - 3.35 - - - - - - - - - - 4.31 -
- - - - - - - 2.5 - - - - - - - - - - - - - - - - - - - 3.63 3.59 -
Spov3_chr5.02398 (AtNPC1-2)
3.77 - - - - - - - - - - - - - - - 4.03 - - - - - - - - - - - - -
- - 1.26 - 2.81 2.08 - - - - - - - 1.51 - - 1.5 - - - - - 1.24 - - - - - - 3.05
1.0 -1.61 1.0 -0.41 0.36 -0.2 -0.66 0.54 -0.52 1.25 0.3 -0.31 - 0.17 -0.6 - 1.41 -0.71 - -2.3 -1.51 -0.14 1.77 - -1.06 -1.57 -1.77 -0.34 -2.27 1.82
- 2.91 - - - - - - - - - - - 1.31 - - 2.89 - - 2.05 - - - 1.03 - - - - - 2.67
- 1.65 - 3.15 - - - - - - - - - - - - 2.61 - - - - - - - - 1.53 - 3.17 - -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
- - - 3.89 - - - - - - - - - - - - 3.93 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
1.8 0.82 -0.03 0.75 -0.29 -1.23 - -0.15 - 0.88 - -1.18 - -1.26 1.14 -0.07 2.31 -1.09 - -0.05 -0.9 -1.15 - - - - - 0.38 -0.69 2.26
- 1.63 -0.95 -0.85 0.04 - -0.81 -0.29 0.41 2.13 - -0.95 -0.92 -0.31 - -1.81 0.77 - -0.69 -2.03 - -1.04 -0.49 -1.97 - 1.4 1.08 1.59 1.59 -0.36
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
-0.95 -0.89 1.36 -1.21 0.56 - -1.18 1.12 -0.99 - 1.39 - -0.98 1.13 -0.06 0.21 1.9 1.84 - 0.77 - -1.21 - -0.15 - -0.02 - -0.72 0.02 -0.02
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
-21.42 -21.58 - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
- - - - - - - - - - - 2.52 - - - - 4.1 - - - 0.57 - - - - 1.88 - - - 0.96
- - - - - - - - - - - - - 3.16 - - 4.39 - - - - - - - - - - - - -
- - - 2.09 - - - - - - - - - - - - 4.01 - - - - - - - 2.13 - 2.39 - - -
Spov3_S01.00171 (Kin7.5)
- - 3.76 - - - - - - - - - - - - - - - - - - - - - - - - 3.0 3.08 -
- - - - - - - - - - - - - - - - 4.91 - - - - - - - - - - - - -
0.17 0.99 0.4 0.37 0.93 -0.31 -0.62 0.17 -0.13 0.27 -1.07 -0.61 -0.54 0.43 -0.42 -1.63 -0.84 -0.27 -0.77 0.05 -0.48 -2.69 -0.72 -1.61 0.17 -0.48 0.73 0.79 0.03 1.26
Spov3_S04.00071 (LecRK-V.2)
- - - - - - - - - - - - 2.67 - - - - - - 2.36 - - - - - - - - 4.21 -
Spov3_S08.00039 (EXO70B1)
- - - - - - - - - - - - - - - - 4.54 - 2.77 - - - - - - - - - - -
2.09 - 1.19 0.83 0.83 1.17 0.96 - - - - - 1.21 - - - 2.89 0.96 - - - - - - - 1.2 0.79 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.