Heatmap: Cluster_628 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra016251 (iqd9)
-1.95 -1.04 -2.01 -3.11 0.12 -3.27 -0.74 0.32 -0.4 -1.02 -0.34 -1.47 -1.87 0.57 1.65 0.72 0.04 -0.22 0.72 -0.6 -0.37 0.24 0.73 1.03 -0.23 -0.23 -0.17 -0.1 1.03 0.08 0.51
Bra016932 (ARP)
-1.15 -1.46 -1.02 -1.32 -0.49 -0.19 0.43 -0.22 -0.61 -0.31 1.03 -0.09 0.01 0.57 0.33 0.49 0.59 -0.26 -0.53 0.03 -1.11 0.31 0.02 0.22 0.26 0.23 0.2 0.33 0.28 -0.14 0.12
Bra018712 (PBAC4)
-0.64 -0.32 -0.3 -0.79 -0.04 -0.09 0.07 0.43 0.16 -1.34 -0.03 -0.28 -0.07 0.54 0.31 0.49 -0.24 -0.44 -0.54 -1.14 0.45 -0.13 0.56 0.26 0.31 0.41 0.37 0.18 0.09 -0.23 -0.16
Bra019851 (NRPD10)
-0.15 -1.36 0.26 -1.48 -0.73 -0.64 -0.72 0.42 -0.52 -1.85 -1.13 -0.85 -1.14 0.8 1.27 0.71 -0.54 -0.84 -0.6 -1.75 0.52 0.14 0.91 0.29 0.35 0.1 0.35 -0.18 0.36 0.18 0.99
Bra037440 (PRMT4A)
-1.85 -0.78 -1.89 -1.63 0.3 -0.63 0.13 0.06 0.42 -1.04 0.25 -0.57 -1.23 0.51 -0.06 0.78 0.31 0.42 -0.65 -0.11 0.02 -0.95 0.59 0.38 0.51 0.01 0.48 0.66 0.65 -0.12 -0.08

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.