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Heatmap: Cluster_294 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000689 (RABG3A)
 -0.44 -0.22 -0.27 -0.22 0.45 0.26 0.14 0.05 -0.06 0.12 -0.07 -0.1 0.3 0.33 0.08 0.07 0.24 -0.09 -0.24 0.03 0.16 0.07 0.39 -0.14 -0.14 -0.33 -0.05 -0.01 -0.22 -0.29 -0.37
Bra004562 (RTNLB5)
 -0.33 -0.13 0.05 -0.13 0.54 0.32 0.16 0.15 -0.02 0.19 -0.14 -0.12 0.35 0.17 0.19 0.29 0.01 -0.28 -0.11 0.02 0.05 -0.01 0.67 -0.25 -0.3 -0.71 -0.31 -0.26 -0.35 -0.44 -0.22
-0.06 0.08 0.11 0.14 0.63 0.31 0.09 0.2 -0.21 -0.12 -0.12 -0.34 0.26 0.39 0.48 0.1 0.07 -0.28 -0.28 0.04 0.07 -0.06 0.22 -0.07 -0.17 -0.4 -0.32 -0.13 -0.29 -0.62 -0.62

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.