1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_599 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra003428 (PBF1)
 -1.09 -0.01 -0.45 -0.58 -0.5 -0.45 -0.71 -0.39 -0.46 -0.17 -1.02 -0.68 0.07 0.12 0.8 -0.04 -0.42 0.53 -0.55 -0.39 -0.64 -0.03 0.97 0.45 0.36 0.36 0.47 0.43 0.42 0.24 0.4
Bra015533 (HAK1)
 -1.7 -0.91 -0.7 -0.87 0.11 -0.58 -1.66 -1.84 -0.42 -0.11 -0.74 -1.04 -0.87 0.17 1.04 -0.05 -0.03 -0.02 0.23 -0.33 -0.54 -1.06 1.74 0.39 0.53 0.21 0.3 0.28 0.79 0.4 0.41
Bra025700 (PAP24)
 - - - - - - - - -0.91 - -2.46 -2.03 - -2.61 1.1 0.13 -1.47 1.25 - 0.02 - - 2.13 1.38 1.28 1.59 1.71 1.13 0.98 0.3 0.89

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.