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Heatmap: Cluster_24 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000188 (LBD15)
 -1.16 -1.09 1.52 1.42 0.52 -1.08 - -2.8 -2.19 -1.99 -0.4 0.07 0.87 0.93 1.62 0.68 -0.13 0.58 -1.29 0.95 -0.73 0.97 -0.38 0.2 -2.72 -3.07 -0.46 -2.87 -0.09 -0.99 -
Bra000658 (AtFDB32)
 - 2.31 - - - 1.95 - - 0.77 - - 0.96 2.13 - - - - 2.46 2.68 - - - - - - - - 1.18 - - -
Bra000855 (OSCA1.7)
 - - - - - - 1.69 2.82 - - - - 1.08 - - - 1.15 2.19 - 2.61 1.84 - - - - - - - - - 1.11
-4.04 -0.84 -1.77 -4.04 0.36 -0.01 -0.63 0.02 -0.8 -0.63 -0.56 -0.9 1.3 0.79 1.17 0.23 0.21 0.08 1.48 0.06 1.07 0.19 0.09 -0.09 -2.14 -0.4 -0.3 -1.34 0.25 -0.74 -0.38
-0.7 - 0.85 -0.11 -1.95 -0.1 0.33 - - -2.18 -2.05 -0.09 -0.35 -0.2 -0.82 -1.86 -1.06 -0.6 1.83 0.29 1.75 0.4 0.53 0.67 0.86 1.43 -1.13 -0.28 -0.88 -1.93 0.08
Bra001243 (INO80)
 - - - - - 1.0 - 2.45 - - 2.41 1.9 1.19 - 1.21 - 2.14 - 2.46 - - - - - - - - - - - -
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - -22.09 -11.95 - - - -
Bra002702 (REM15)
 -2.04 -0.22 - 0.3 1.39 0.55 -0.27 -0.78 -0.48 -1.26 0.6 -0.65 -0.58 -0.91 -0.65 -0.96 -3.05 1.06 0.28 0.33 -0.4 -2.32 0.48 -0.13 0.07 -0.1 -0.63 0.99 0.61 0.18 1.21
Bra003432 (FLA10)
 - - - - - - -0.55 -0.6 1.92 0.14 0.6 1.65 0.49 0.72 -0.6 0.6 1.32 0.92 0.27 0.78 -1.15 -1.36 -4.44 -1.32 -2.43 -0.75 -0.52 -1.49 -5.84 0.24 1.7
Bra003927 (RLP11)
 - 0.77 0.24 - - - - - - - - 0.58 - - - - - - 2.26 - - - 0.59 1.38 2.86 - - 0.69 2.19 2.09 -
Bra004202 (BX3)
 - - - - - - 2.04 - - -0.09 - 2.65 0.48 - 1.43 1.04 - -0.2 3.12 0.05 0.18 -0.45 -1.96 - - - - - -0.25 - -
Bra004304 (CRCK3)
 - - - - - - 1.48 - 0.03 - 1.04 - - 1.42 - - - - 1.62 2.07 - - 1.5 1.37 0.44 - 2.12 0.48 0.41 - 0.44
Bra004575 (NAC006)
 - - - - - - - - - - - - - - - - - -0.6 1.79 1.59 1.51 1.76 - 2.25 2.87 2.29 -0.58 - - - -
- - - - - - - - - - - 2.36 - - - - - - 4.07 - - - - 3.19 - - - - - - -
Bra005032 (CASPL4D2)
 - -1.99 - - -0.27 0.68 - - - -0.31 - - -2.04 - - -2.03 - 2.04 2.61 -1.25 - 0.53 1.33 2.04 -2.01 2.89 -0.68 - - - -
- - - - 0.93 0.74 - - - - - - - 0.86 1.07 - - 0.73 2.07 - 0.87 - 2.83 - - - - 1.1 2.71 - -
Bra005293 (SAUR45)
 - - 2.21 - 1.34 0.21 - - - - - 0.32 - - - - - - 3.68 - 0.21 - 1.34 1.23 - - - 1.37 - - -
Bra005376 (SETH1)
 0.09 -0.12 -0.38 -0.59 0.42 0.41 -0.45 -0.54 -0.44 -0.89 -0.37 -0.08 -0.62 -0.12 0.33 -0.05 0.01 0.56 0.64 0.02 -0.12 -0.46 0.74 0.58 0.28 0.46 -0.37 -0.18 0.08 -0.3 -0.43
Bra005528 (RLP27)
 - - - - - -0.63 - - -0.17 -1.61 -0.56 3.13 -0.49 0.69 0.24 2.07 1.9 -1.71 2.1 - 0.98 - -0.64 - - - -1.66 - - -0.47 -
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra005928 (RR21)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
-2.21 -3.09 -0.41 -0.54 -3.51 -3.46 -0.51 -1.14 -1.61 0.16 -3.57 0.17 -0.6 1.32 0.93 -0.05 -0.5 1.57 1.68 0.86 0.62 1.63 -0.06 1.22 -1.03 0.7 -3.3 -3.28 - - -1.8
Bra007031 (CASPL5B2)
 -1.84 -0.83 - 1.63 1.13 - 0.02 0.08 0.79 -0.07 0.84 1.44 0.09 - 0.29 -0.92 1.67 0.12 0.59 1.28 - - - 0.09 - 0.43 -1.13 -0.42 -0.45 -2.03 -
-1.03 -2.54 - -2.56 -0.57 -0.94 - -2.96 - - -0.58 -1.35 - 0.62 -0.38 -0.16 -2.82 -0.0 2.0 -0.05 1.46 0.18 0.74 2.06 -0.63 1.37 0.81 -1.2 0.89 0.28 -1.85
Bra007922 (EDA24)
 - - - - - - - - - - - - 3.11 - - 2.73 0.94 - 3.01 2.52 - - - - - - - - - - -
Bra008481 (GA3OX4)
 - - - - 2.48 1.51 1.26 2.44 - - 1.41 - - - - - - - 3.18 1.61 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
Bra009760 (GCN4)
 - - - - - 2.79 - 4.59 - - - - - - - - - - - - - - - - - - - - - - -
0.63 - - 0.6 - - 1.86 1.8 0.07 - - 1.92 - - 1.29 - - - 2.46 1.91 - 1.65 0.2 - - - - - - - -
- - - - - - - - 0.9 - - - 2.64 0.45 0.3 1.25 - - 1.82 - 0.07 1.19 - 1.53 - - - 0.99 0.0 -0.13 2.09
-0.15 0.0 0.2 -0.19 -0.49 -1.01 -0.15 -0.81 0.24 -0.93 0.01 0.08 -0.44 0.88 0.6 -1.04 0.43 -0.01 -0.04 0.23 0.42 0.2 0.36 -0.5 -0.18 0.03 -0.54 -0.44 0.53 0.28 0.14
-0.24 -0.23 -0.2 -0.16 -0.17 -0.07 -0.24 -0.37 -0.3 -0.57 -0.6 -0.5 -0.62 -0.07 0.11 -0.31 -0.46 0.44 0.93 0.13 0.21 0.32 -0.21 0.88 0.37 0.94 -0.06 -0.33 -0.18 -0.3 -0.2
- - - 0.29 - 0.45 1.18 - - - - - - - - 0.7 - 1.99 2.66 - - - 2.05 - - - 0.64 2.54 - 1.44 -
- - - - - - - - - - - - - - - 2.01 - 1.69 3.08 - - - 1.82 - - 1.55 - 0.41 1.36 1.83 0.44
-0.66 -0.06 -0.14 -0.49 0.06 0.24 -0.49 -0.01 -0.26 0.22 0.25 -0.18 0.15 -0.2 0.82 -0.89 0.14 0.27 0.33 0.12 0.07 0.23 0.03 -0.39 -0.21 -0.15 -0.09 -0.03 0.32 -0.27 0.11
Bra013168 (HA6)
 - - - 0.14 - - - - - 1.61 - - - - - - - 1.33 - 1.18 1.56 1.08 2.14 3.34 - - - - - 0.19 0.39
Bra013473 (AtBBE17)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra014155 (AGL49)
 - - - - - - - - - - - - 2.43 0.18 - - 1.5 1.09 3.46 - - - - -0.15 1.91 -0.14 - - - - 1.56
Bra014822 (AP3)
 -2.61 -0.53 -0.97 -1.3 -1.11 1.36 0.14 -1.33 0.9 1.37 1.06 -0.03 1.36 -0.11 1.09 -0.38 -0.3 0.02 1.7 0.23 1.03 -0.19 - -2.65 -2.7 -2.41 -3.61 -1.53 -1.83 -3.55 -1.61
- - - - - - - - - - - - - - - -0.86 - -1.15 2.14 1.01 0.43 2.64 - 1.86 2.57 2.33 0.49 - - - -
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
- -0.53 0.49 -1.57 0.35 1.03 -1.92 - - -0.08 0.75 - 1.16 0.66 2.57 0.14 0.39 - -1.75 0.96 -0.07 1.52 -0.75 - - 0.21 -0.07 - -0.74 -0.29 -
Bra015586 (SKIP19)
 - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - - - - - - - 0.39 - - - 3.13 1.98 -0.77 2.52 0.57 2.03 0.67 - - 0.9 - - - - - 0.73 - - -
0.14 0.33 -2.17 -0.41 -0.81 -0.83 0.69 -1.65 -1.64 -0.53 -0.53 - -0.77 -1.33 0.59 - 0.44 0.22 2.11 -0.44 0.09 0.76 1.24 1.1 0.01 0.69 -0.82 -1.28 -2.32 -2.41 0.64
Bra017154 (KRATOS)
 - - - 0.08 - - - - - - - -0.17 - 1.83 - - - -1.16 2.51 1.97 - - 2.75 2.56 - 0.84 0.03 - - - -
Bra017862 (RK3)
 - - - - -1.36 - -1.06 -2.22 -2.39 -0.18 1.24 0.88 -1.29 -2.15 -0.6 1.46 -0.29 0.66 1.3 0.84 1.71 1.31 -0.43 1.0 0.37 1.74 -2.13 - - - -0.7
- - - - 2.59 - - - - - 2.52 - - - - - - - 2.78 - - 2.48 - - - - - - - - 2.77
- - - - - - 0.1 0.35 - - 0.42 - 1.6 - - 1.61 0.56 - 2.34 - 1.86 - 2.42 - - - - 1.55 1.48 - -
- - - - - - - -0.82 - 0.96 0.82 - -0.47 - - - - 1.86 3.82 - - - - 2.01 0.9 0.7 - - -0.46 - -
Bra018888 (XID)
 -1.34 -2.29 -0.87 - -1.36 -2.21 -1.73 -2.32 -1.45 1.64 2.19 -3.11 -5.19 0.68 2.04 -1.53 -1.99 -0.42 2.41 1.41 0.47 2.04 - - - - - - - - -
Bra020035 (CPK34)
 -1.45 -2.45 -1.27 -0.57 0.66 -0.62 -0.22 1.47 -0.53 -0.02 0.68 0.72 0.32 -0.02 0.92 -0.11 0.94 0.4 0.53 -0.08 0.22 -0.96 -0.0 -0.18 -0.93 0.48 -1.08 -0.36 -1.87 -0.59 -2.22
- - 0.75 - - 0.75 - 1.68 - - - 0.76 - - 1.04 - 0.8 - 3.61 - - - 1.76 - - - 1.72 - - - -
- - - - - - - 3.46 - - - - - - 2.81 - 3.05 2.25 - - - - - - - - - - - - -
Bra021521 (GRF5)
 - -1.68 -1.8 -2.13 -2.58 -0.47 -1.62 -2.47 -3.71 -1.35 -2.36 -2.37 -1.76 -3.03 1.19 -1.09 -2.35 1.86 2.18 0.64 0.14 0.47 -0.52 1.28 0.81 2.03 -0.26 -0.8 -0.52 -0.89 -0.41
- - 0.35 -1.06 -1.73 -1.8 -0.41 -1.81 - 0.21 - - -1.7 -1.32 2.04 0.12 - 1.9 2.65 1.1 0.67 - 1.45 - - - - 0.35 1.27 - -1.37
-1.42 0.2 1.12 -0.98 0.92 0.72 -0.1 -0.39 -0.62 -1.63 -2.3 0.48 0.8 -0.46 1.98 0.61 -0.88 -0.57 0.78 -0.09 -1.58 0.3 0.64 -0.86 -3.48 -1.08 -1.0 -2.96 -0.44 -0.69 -0.07
Bra022200 (RFC3)
 - - -1.27 - 1.33 0.56 1.09 -0.07 -0.11 0.92 - 0.17 1.63 - - 0.25 0.87 1.11 - 0.26 - 1.86 0.11 0.61 0.11 - - 0.73 - - 0.16
Bra022664 (STUbL1)
 - - - - - - - - 2.03 -0.52 0.59 -0.26 - -0.21 - 2.54 - 1.61 2.74 0.75 - 1.79 -0.23 - - - - - -0.42 - -0.47
Bra023074 (BDR8)
 - - - - - - 1.44 0.56 - 0.73 - - 2.46 - - - - - 2.85 - - - 1.73 - - 0.67 - 1.04 - - 2.46
-0.68 -0.72 -0.53 -0.67 0.13 -0.31 -0.75 -0.41 -1.03 -0.84 -0.93 -0.8 -1.44 0.01 0.13 -0.9 -0.87 0.39 1.02 0.17 -0.05 0.4 0.22 1.18 0.7 1.17 0.34 -0.03 0.13 0.04 0.08
Bra023251 (OPL1)
 - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
Bra023759 (SUP)
 - - - - - - - - - - - - - - - - - 2.51 2.74 2.64 - - 2.67 - - 2.6 - - - - -
Bra023799 (EDF3)
 - -1.38 - -0.37 -0.59 0.6 0.6 1.96 1.0 0.54 -0.29 0.41 -0.09 1.09 1.93 0.18 1.11 -4.07 0.43 1.39 0.06 0.31 - -2.8 - - - - - - -
Bra024149 (REME2)
 - -0.57 - -0.68 -2.26 -2.57 - - -0.34 -1.69 -1.78 -1.27 -1.32 0.37 - -0.15 -1.58 1.76 2.28 0.7 0.64 -1.55 1.81 1.03 1.94 0.11 -1.32 - - 0.39 -0.6
Bra025928 (SUM5)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
- -0.36 -2.52 - -0.65 0.05 -1.76 -3.59 -0.42 -2.3 -1.84 -1.87 -2.67 0.78 0.49 0.08 0.15 -1.12 1.89 -0.08 0.18 -0.79 1.85 -1.08 0.49 0.6 0.69 -1.23 0.87 -1.1 1.53
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 3.79 - - - - - - - - - - 4.1 - - - - - - - - - - - -
Bra027878 (HO4)
 1.18 - - - 3.5 - - - - - - - - - - - - - 2.94 - - 3.01 0.77 - - - - - - - -
- - - - - -0.97 - -1.0 -1.1 -0.9 -0.17 - 0.31 -0.83 -0.45 -0.76 2.37 -1.01 1.31 1.13 - 1.69 1.39 1.72 - - 1.52 - - 0.59 0.13
- - - - - - 1.59 - - - - - 1.98 - - - - - 3.58 - 1.88 - - - 2.15 - - - - - 1.99
Bra028412 (DDR1)
 0.61 -0.41 0.04 -0.95 -0.45 0.02 -0.3 -0.27 -0.93 -0.68 -0.46 -0.43 -0.25 0.35 0.59 -0.77 -0.07 -0.24 1.26 0.19 0.19 0.59 -0.32 0.77 0.04 0.83 -0.62 -0.53 -0.45 -0.5 -0.21
Bra028711 (ST2A)
 - - - - - - - - - 1.14 1.33 1.0 0.85 - - - 0.31 0.62 1.58 1.48 1.59 - 2.18 - - - 0.67 - 2.05 - -0.61
Bra028937 (GAMT2)
 - - - - - 0.26 -0.9 -3.72 0.15 0.25 0.91 0.77 -1.18 0.05 -1.23 -0.28 0.52 -0.12 0.75 -0.24 1.53 0.51 -0.03 1.11 0.33 1.59 -0.95 -0.21 0.56 -0.71 -0.99
Bra029346 (COB)
 - - - - -1.16 -0.28 0.94 2.04 0.35 - - 0.85 1.47 1.34 2.56 - - -0.88 1.79 1.35 - 1.53 - - - - - - - - -
Bra030898 (BG3)
 -0.65 -1.1 -0.8 -0.55 -0.33 -0.45 -0.92 -1.77 -0.18 -1.07 -0.95 -0.66 -0.27 0.6 0.67 -0.21 -0.78 0.99 1.51 0.97 0.56 0.07 -0.66 1.27 0.41 1.11 -0.38 -0.95 -0.71 -1.65 -1.61
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
Bra031463 (CYCA2;4)
 - - - - - - - - 0.65 - - - - 0.88 - - - - 3.87 0.6 - - - 1.56 - - - 0.79 0.8 1.73 0.75
Bra031980 (WOX11)
 -0.16 -0.06 -0.31 -0.35 0.06 0.07 -0.78 -0.75 -0.9 -0.81 -1.52 -1.01 -1.07 -0.19 0.18 -0.46 -0.75 1.0 1.11 0.11 -0.32 0.29 -0.07 0.95 0.57 1.19 -0.01 -0.32 0.03 -0.22 -0.1
- 2.41 - - - - - - - 2.99 - - - - - - - - 3.22 - 2.12 - - - - 2.03 - - - - -
- - - -2.93 - - -0.62 0.7 0.49 -0.26 1.27 1.42 0.25 1.96 1.65 0.7 1.86 -1.18 -0.88 1.61 1.07 0.71 -4.39 - - - - - - - -
-2.04 -1.05 -3.51 -0.33 -0.24 0.43 0.14 2.06 1.15 0.59 -0.44 0.32 0.7 0.84 1.63 0.05 -0.02 - 0.97 1.35 0.52 0.73 - - - - - - -4.19 - -5.3
Bra033601 (SEC14)
 -2.73 -1.67 -1.35 - 0.54 0.12 -0.49 -1.1 -0.39 -1.45 0.24 -0.82 0.88 -1.26 0.43 0.87 -2.85 0.64 0.53 -1.37 -0.2 0.68 -0.21 1.48 -0.09 0.03 -1.04 -0.25 0.44 0.49 1.27
- - - - - - - - - - - - - - 3.86 - - - 4.04 - - - - - - - - - - - -
-2.73 -1.43 -1.47 -1.13 0.97 -0.12 -0.65 -0.54 -0.21 0.07 0.61 -0.2 0.75 -1.85 0.53 -0.51 -0.15 0.29 0.17 0.22 0.19 0.04 0.1 -0.27 -0.22 0.06 -0.55 0.43 0.12 0.37 1.15
Bra034465 (SVB3)
 - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
-0.79 -2.78 -2.4 -1.03 0.34 1.15 0.76 -1.31 -4.26 -0.43 -1.7 0.01 -0.19 -0.86 0.74 -0.94 -2.19 0.36 1.25 1.35 -0.03 -0.79 1.19 -0.13 0.57 0.11 -0.32 0.82 0.26 -0.84 -2.24
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
Bra036930 (AHL26)
 - - - - 1.71 - - - 0.45 2.18 - 0.5 1.8 - 1.8 - - - 3.54 - - - - - - - - 0.85 - - -
- - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - -
- - - - - - - - - - - 2.59 2.73 - - - - 2.48 2.71 - - - 2.64 - - - - - - - -
- - - - - - - - - - - - - - - - - 0.64 1.66 1.26 1.13 2.4 -1.53 3.47 -0.46 1.99 -1.63 - - - -
1.46 -2.26 -0.03 0.65 0.71 -0.1 -0.36 0.96 -0.17 1.07 0.11 -0.44 0.51 -2.16 - -0.52 0.66 -0.02 0.85 1.53 0.08 0.35 - 0.45 - 0.4 - - -0.73 -2.5 -
- - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - 1.64 - - - - - 1.19 4.0 2.34 - 2.19 - - - - - - - - -
- - - - - - - - - - - - - - - - - - 4.33 - - - - - - - - - - - 3.44
Bra039286 (AtDOA11)
 - - - - - - - -0.16 - - 1.24 - - 2.24 2.24 - - - -0.26 2.67 2.22 2.69 - - - - - - - - -
Bra040256 (ACA9)
 - - - - - - 0.52 0.88 - - - - -0.06 2.32 0.46 - 1.15 - 3.19 - - 0.94 - - - - 1.63 - 1.62 - -0.08

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.