Heatmap: Cluster_173 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_36780.1 (MYB21)	-	-	-	-	-	-	-	-	-	-	-	-	1.11	-	-	-	-	4.73	-	-	-	1.22	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_115820.1 (NOL)	-0.65	-0.45	0.48	-1.33	-1.44	-1.68	-2.4	-1.96	-1.32	-1.49	-0.44	-0.45	-0.33	0.18	-0.54	-1.03	-0.53	3.91	-0.7	-0.51	-0.55	-0.76	-0.33	-2.14	-2.16	-1.12	-1.01	-3.92	-1.04	-2.21	-3.72
Lsat_1_v5_gn_1_125361.1	-	-	-	-	-	-	-	-	-	-	-	-	-	1.43	-	-	-	3.33	-	-	-	-	4.09	-	-	-	-	-	-	-	0.22
Lsat_1_v5_gn_1_19261.1 (SAC52)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.47	-	-	-	-	3.15	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_25141.1 (RTM2)	-1.38	-4.35	-1.09	-0.55	-1.33	-0.51	-0.8	-1.83	-0.48	0.01	-0.54	0.15	-0.21	-0.63	0.07	-0.58	-0.68	3.01	-0.35	-0.36	-1.64	-1.74	2.13	-0.27	-0.87	-1.53	-0.25	-2.03	-0.55	-0.04	0.04
Lsat_1_v5_gn_1_73681.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_124321.1 (PRPL1)	-0.45	-	-	-	-	-0.89	0.74	-	-	-	-	-	-	-0.45	-	-	-	4.2	-	-	-	-	2.57	-	-0.92	-	-0.6	-	0.28	-	-0.86
Lsat_1_v5_gn_2_45680.1	-	-	-	-	-	-	-	-	-	-	-	-	-1.01	0.15	-	-	-	4.78	-	-	-	-	-	0.53	-	-	-	-	-0.93	-	-
Lsat_1_v5_gn_2_51640.1 (EXT21)	-	-	-	-	-0.16	-0.2	-	-	-	-	-	-	-0.19	-	-	-	-	4.3	-	-	-0.43	-	2.99	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_63840.1	-1.49	-	-	-	-3.26	-0.63	-0.69	0.19	-1.3	-	-0.92	-0.88	2.26	-0.88	0.15	-2.6	-3.21	3.45	-2.24	-1.62	-3.25	-1.97	1.26	-1.51	-	-0.3	-1.63	-	0.05	-1.39	1.5
Lsat_1_v5_gn_2_68580.1	-	-2.04	-	-	-2.3	0.19	-2.22	-	-	-	-	-	-2.34	-	-2.14	-	-2.18	3.99	-0.99	-2.53	-0.1	-	3.2	-1.44	-	-	-	-	-1.25	0.03	-
Lsat_1_v5_gn_2_78020.1 (RD17)	-	-	-	-	-	-	-	-	-	-	-	-	2.84	-	-	-	-	4.01	-	-	-	-	2.7	-	-	-	-	-	-	-	0.31
Lsat_1_v5_gn_2_90700.1 (MDR13)	-	-	-	-	-	0.78	-	-0.31	-	-	-	-0.4	1.42	1.59	-	-	-0.22	3.76	2.14	-	-	-	-	-	-	0.61	-	-	-0.22	-	-0.26
Lsat_1_v5_gn_3_104701.1 (MYB92)	-	-	-	-	-	0.37	-	-	-	-	-	-	-	-1.01	-2.01	-	-	4.15	-	-	-	-	3.36	-	-	-	-	-	-0.18	-	-
Lsat_1_v5_gn_3_107501.1 (OGOX3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.7	-	-	-	-	2.33	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_20281.1 (WIH2)	-	-	-	-	-	-	0.25	-	-	-	-	0.95	-	-	-	-	-	4.62	-	-	0.05	-	1.23	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_24581.1 (NAC038)	-	-	-	-	-1.62	-	-	-	-	-	-	-	-	-	-	-	-	4.86	-	-	-	-	0.67	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_3001.1 (PES)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.51	-	-	-	-	3.05	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_41301.1	0.33	-0.46	-0.13	-0.12	-0.66	-0.37	-0.81	-1.57	-2.09	-1.13	-2.72	-1.76	0.29	-1.41	-1.32	-0.53	-0.4	3.67	-0.96	-1.12	-1.35	-0.02	-0.7	-3.06	-1.22	-0.55	-0.92	-0.72	-1.01	-2.08	0.53
Lsat_1_v5_gn_3_50541.1 (GSTU16)	-2.87	-	-3.04	-4.05	-1.78	-3.38	-4.37	-	-0.93	-1.82	-3.74	-3.42	-2.5	-2.27	-1.49	-1.63	-1.41	3.64	-3.18	-2.51	-3.93	-5.39	2.79	-2.61	-0.97	-5.51	-2.49	-3.77	-0.55	0.73	2.25
Lsat_1_v5_gn_3_53860.1 (WBC19)	-1.75	-3.12	-1.29	-2.53	-0.35	-0.68	-2.04	-1.34	-1.93	-4.62	-2.08	-3.61	-2.76	0.13	-0.55	-2.04	-2.31	3.92	-1.34	-3.66	-3.75	-1.37	2.52	-2.31	-2.94	-0.71	-3.13	-3.07	-0.46	-1.5	-0.13
Lsat_1_v5_gn_3_54660.1 (TSO1)	-	-	-0.36	-	-3.42	-3.2	-	-	-2.86	-	-1.77	-	-	-0.54	0.29	-	-2.7	3.98	-0.26	-1.17	-1.19	-0.09	2.84	-	-1.18	-0.71	-0.81	-1.73	-	-	-
Lsat_1_v5_gn_4_112020.1 (FY)	-	-	-	1.6	-	-	-	-	-	-	-	-	-	-	-	-	-	4.44	-	-	-	-	2.66	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_131420.1	-	-	-	-	0.2	-	-	-	-2.09	-	-	-	-0.2	-1.75	-0.78	-	-1.88	4.65	-	-	-	-	-	-	-0.0	-	-	-	0.05	-2.01	-1.95
Lsat_1_v5_gn_4_167900.1 (PLP1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.66	2.5	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_21660.1	-	-	-	-	-	-	-2.08	-	-	-	-2.13	-	1.15	-2.03	-	-	-	3.55	-	-	-	-0.21	3.19	-	-	0.38	-2.41	-	-	-	2.29
Lsat_1_v5_gn_4_40221.1 (HMG)	-0.94	-	-	-	-1.55	-	-	-	0.37	-	-	-	-	-	-	-	-	4.78	-	-	-	-	0.38	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_42081.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.63	-	-	-	-	2.64	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_56301.1	-	-	-	-	-6.79	-4.23	-	-	-	-	-	-	-4.12	-	-	-	-	4.63	-	-	-	-	2.61	-7.05	-5.98	-	-5.8	-8.44	-7.53	-	-
Lsat_1_v5_gn_4_56361.1 (MYB74)	-2.2	-1.32	-1.74	-2.23	0.41	0.14	-1.61	-1.61	-1.45	-0.8	-1.21	-4.06	-3.88	0.29	-0.5	-0.24	-0.59	3.62	-1.39	-3.05	-2.76	-1.75	2.42	-1.27	-1.79	-2.78	-1.82	-1.83	-0.52	-0.26	-1.78
Lsat_1_v5_gn_4_64000.1 (TREPH1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.55	2.93	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_106381.1 (VTL1)	-2.13	-	-	-	-	-	-2.48	-	-	-2.41	-	-	1.77	0.89	-2.5	-1.19	-1.69	4.4	-	-	-	-	-	-	-	-	-0.82	-	-	-	1.33
Lsat_1_v5_gn_5_11641.1 (FATB)	-	-	-	-	-1.79	-	-	-	-	-	-	-	-	0.41	-	-	-	4.44	-	-	-	-	2.2	-	-	-	-	-	0.79	-	0.42
Lsat_1_v5_gn_5_123540.1 (TBL16)	1.3	-	-	-	-	-	-	-	-	-0.15	-	-	-	0.05	1.67	-	-	4.03	-	-	-	-	2.36	-	-	-	-	-	0.03	-	-0.12
Lsat_1_v5_gn_5_16440.1	-	-	-	-0.09	-0.88	-	-	-	-0.84	-	-0.56	-	-0.59	-	-0.47	1.31	-	4.42	-	-	-	0.78	-0.49	-	-	-	-	-0.71	-	-	-
Lsat_1_v5_gn_5_176161.1 (RPOC2)	-	-0.36	-	-	-	-	-	-	-0.46	-	-	-	1.06	-0.45	-	-	-0.41	3.81	-	-	-0.81	-	2.69	-	1.35	-0.64	-	-	-0.64	-	0.08
Lsat_1_v5_gn_5_177160.1 (AthCYSTM1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.17	-	-0.17	-	-	3.6	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_25820.1	-	-	-	-0.39	-	-	-	-	-	-	-	-	-	-	-	-	-	4.21	-	-	-	-	3.0	-	-	-	-	0.1	-	-0.37	0.93
Lsat_1_v5_gn_5_7401.1 (NAC2)	-	-	-	-	-	0.45	-	-	-	-	-	-	0.71	1.22	-0.35	-	-	3.86	1.56	-	-0.6	-0.39	0.47	-	-	-	-	-	0.97	-	1.43
Lsat_1_v5_gn_5_87981.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.68	-	-	-	-	2.44	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_21461.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.88	-	-	-	-	-	-	-	-	-	-	0.58	-	-
Lsat_1_v5_gn_6_24180.1 (TAF6B)	0.75	-	-	-	-	-	-	1.9	-	-	-	-	-	0.61	-	-	-	4.27	1.8	-	-	0.4	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_74680.1 (ANX2)	-	-	-	0.16	-1.19	-1.26	-	-0.31	-	-	-	-	-1.12	-0.03	0.56	0.94	-	4.05	-	-	-	-	1.78	-	-1.19	-	-	-	-0.19	1.06	-
Lsat_1_v5_gn_6_87781.1	-	-	-	-	-0.03	-0.08	-	-	-	-	-	-	2.59	-	-	-	-	3.49	-	-	-	-	2.72	-	-	-	0.85	-	-	-	1.78
Lsat_1_v5_gn_7_102321.1 (GLDH)	-	-	-	-	-	-	-	-	-	-	-	-	-	0.32	-	-	-	4.76	0.95	-	-	-	-	-	-	-	-	-	-	-	-0.42
Lsat_1_v5_gn_7_102441.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.86	-	-	-	-	0.71	-	-	-	-	-	-	-	-1.76
Lsat_1_v5_gn_7_10960.1	-	-	-	-	-0.26	-	-0.29	-	0.51	-	-	-	-	-	1.48	-	-	4.05	-	-0.39	-	-	2.97	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_15340.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.63	-	-	-	-	2.65	-4.28	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_15460.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.69	-	-	-	-	2.33	-	-	-	-	-	-	-	-3.49
Lsat_1_v5_gn_7_16380.1	-	-	-	-	-	-4.48	-	-	-	-	-	-	-5.64	-	-	-	-	4.59	-	-	-	-	2.74	-4.06	-5.95	-	-	-	-5.94	-	-
Lsat_1_v5_gn_7_2180.1 (ESV1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.59	-	-	-	-	4.24	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_45960.1	-	-	-	-	-	-1.05	-	-	-	-	-	-	2.85	-	-	-	-	4.48	-	-	-	-	-	-	-	-	-	-	-	-	-0.04
Lsat_1_v5_gn_7_63540.1 (POLA3)	-	-	-	-	-2.4	-2.16	-	-2.92	-	-	-	-	3.28	-2.7	-2.85	-1.75	-1.37	3.19	-	-	-3.15	-	2.7	-3.21	-1.07	-	-	-3.34	-3.07	-1.54	1.52
Lsat_1_v5_gn_7_67841.1 (NAD7)	-0.47	-0.98	-0.26	-0.11	-2.9	-2.04	-0.71	-1.25	-0.1	-1.94	-0.09	-0.33	-1.31	-1.19	-0.72	-0.51	-0.36	3.7	-2.32	-1.23	-1.22	-0.59	0.09	-1.66	-0.18	-0.61	-0.53	-0.95	-0.33	-1.55	-0.45
Lsat_1_v5_gn_7_90700.1 (GYM)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.45	-	-	-	-	3.19	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_123401.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.44	2.86	-	-	-	1.03	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_26860.1 (KT5)	-	-	-	0.31	-	-	-	-	1.63	-	-	-	-	-	-	-	-	4.11	-	-	-	-	1.57	1.84	-	-	-	-	-	-	1.53
Lsat_1_v5_gn_8_37660.1	-	-	-	-	-0.46	-	-	-	-2.25	-	-2.25	-	-0.92	-0.91	-3.27	-	-3.38	4.71	-2.61	-0.99	-2.62	-	-1.39	-	-1.13	-3.38	-	-3.36	-	-1.89	-1.42
Lsat_1_v5_gn_8_40661.1 (PEAR2)	-	-	-	-	-1.18	-	-	-	-	-	-	-	-	-0.72	1.31	-	-	4.4	-0.1	-	-	-	2.43	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_64500.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.85	1.06	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_77320.1 (APX5)	-	0.01	-	-0.34	-1.05	-2.7	-0.78	-1.72	-0.53	-1.66	0.09	-	1.07	-	-0.05	-1.43	-0.03	2.92	-0.79	-1.1	-2.66	-	2.7	-	0.21	-	-0.41	-	-1.59	0.63	1.08
Lsat_1_v5_gn_9_10121.1 (PTR3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.55	-	-	-	-	2.58	-	-	-	-	0.71	-	-	-
Lsat_1_v5_gn_9_111341.1 (HS3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-0.94	-0.2	-	-	4.79	-	-	-	-	-0.3	-	-	-3.03	-0.9	-	-	-	-1.18
Lsat_1_v5_gn_9_111641.1	-0.19	-2.1	-1.28	-0.34	-1.48	-0.79	-0.59	0.01	-1.31	-1.07	-0.58	-1.45	0.09	-0.1	-0.78	-0.67	-0.72	3.23	-0.63	-0.31	-0.62	-0.89	1.99	-0.8	-0.51	-0.2	-0.59	0.0	-2.78	-2.34	-2.4
Lsat_1_v5_gn_9_23961.1 (CYP707A2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.27	-	-	-	-	3.55	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_25300.1	-	0.68	-	-	-	-	-	-	-	-	-	-0.78	-0.62	-	-	-	-	4.63	-	-	-	-	0.47	-	-	-	-	-	1.04	-	-
Lsat_1_v5_gn_9_36381.1 (WRKY33)	-0.86	-0.34	-0.74	-1.15	0.34	-0.26	-1.04	-0.95	-0.12	-0.1	0.38	-0.4	-0.93	1.02	0.23	-0.06	-0.91	0.48	0.43	-0.26	-0.7	-0.16	2.05	-0.34	-0.84	0.24	0.44	-0.64	-0.12	0.06	-0.6
Lsat_1_v5_gn_9_53101.1 (ATP1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.75	-	-	-	-	2.04	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.