Heatmap: Cluster_111 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_30101.1 (CLT3)	-	-	-	-	-	-0.18	-	-	-	-	-	-	-	-	-	-	-	2.56	-	-	-	-	4.6	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_118941.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_120200.1	-	-0.19	-	-	0.2	-	-	-	-	-	-	-	-	-2.01	-0.01	-	-	2.58	-	-	-	-	4.42	-	-2.25	-	-	-	-2.27	-	-
Lsat_1_v5_gn_1_23401.1 (SRP2)	-	-1.66	-1.32	-	-	-	-3.24	-2.76	-	-	-	-1.84	-1.59	-2.39	-	-	-1.49	-3.75	-	-1.28	-3.89	-	4.65	-	-3.76	-2.65	-	-	-	0.26	0.81
Lsat_1_v5_gn_1_53360.1	-	-1.91	-	-0.32	-	-	-	-	-	-	-0.99	-	-	-	-	-	-0.88	2.66	-	-	-	-	4.5	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_112080.1 (MEF7)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_29361.1	-1.53	-0.34	-1.31	-3.36	-1.42	-1.04	-3.47	-2.25	-3.81	-3.53	-2.16	-3.47	-0.42	-3.36	-1.66	-4.19	-2.85	2.69	-3.7	-3.79	-4.86	-	4.25	-3.19	-4.63	-	-2.52	-2.83	-4.54	-3.15	-3.68
Lsat_1_v5_gn_2_63381.1 (AGO4)	-	-	-	-0.2	-1.91	-3.29	-0.11	-3.15	-1.08	-3.43	0.85	-1.14	-0.96	-1.15	-0.22	-2.07	-3.54	-0.86	-2.5	-1.47	-	-	4.28	-	-1.13	-2.43	-1.97	-1.82	-3.35	-	1.0
Lsat_1_v5_gn_2_66841.1 (LCR)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.05	-	-	-	-	4.5	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_70281.1 (RDR1)	-	-	-	-	-	-0.79	-	-	-	-	-	-0.08	-	-0.76	-	-	-	0.01	-0.54	-	-1.08	0.37	4.26	-	-	-	0.91	-	1.71	-	0.1
Lsat_1_v5_gn_2_73140.1 (CRT1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_121861.1	-0.4	-1.02	-2.08	-4.08	0.02	0.48	-1.91	-1.95	-2.56	0.44	-4.7	-1.9	-4.59	-0.9	-1.31	-	-18.33	1.98	-0.51	-2.39	-2.23	-1.16	4.01	-1.52	-3.31	-1.58	-2.09	-3.43	-1.17	-1.75	-2.27
Lsat_1_v5_gn_4_129260.1 (NACA2)	-	-	-	-	-0.05	-1.9	-	-	-3.01	-1.09	-0.46	-0.58	-	-1.53	-	-	-	-	-	-1.5	-	-	4.46	0.05	-0.29	-3.06	-	-	-1.78	-2.66	1.41
Lsat_1_v5_gn_4_133341.1 (ERF019)	-	0.31	-1.04	-	1.32	0.54	-3.02	-2.77	-1.44	-	-	-	-	-	-1.18	-2.7	-	2.59	-	-	-	-	4.12	-1.06	-3.03	-	-	-	-	-	-
Lsat_1_v5_gn_4_138720.1 (PTPMT1)	-	-	-	-	-0.63	-2.4	-	-	-	-	-	-	-1.3	-1.04	1.98	-	-	0.72	-	-	-	-	4.45	0.18	-1.31	-	-	-	-	-2.07	-
Lsat_1_v5_gn_4_139520.1 (DAU2)	-	-	-	-	-	-5.3	-	-	-	-	-	-	-	-3.7	-	-	-	0.18	-	-	-	-	4.89	-	-5.06	-	-	-	-	-	-
Lsat_1_v5_gn_4_164380.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.46	-	-	-	-	4.89	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_176580.1 (TN3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_20560.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_20600.1	-	-	-	-	-	-4.39	-	-	-	-	-	-	-	-	-	-	-	1.5	-	-	-5.55	-	4.81	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_20620.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.32	-	-	-	-	4.7	-	-3.91	-	-	-	-	-	-
Lsat_1_v5_gn_4_53121.1 (LOX3)	-	-	-	-	-	-	-	-	-	-	-	-	-0.29	-	-	-0.31	0.47	2.48	-	-	-	-	4.4	-	-	-	-	-	-	-	0.44
Lsat_1_v5_gn_5_107101.1 (PRX62)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.01	-	-	-	-	4.75	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_160261.1	-	-0.16	-	-0.72	0.74	0.1	-2.25	-3.19	-1.15	-1.78	-	-2.4	-1.01	-0.13	-3.22	-1.97	-2.48	-1.61	-3.46	-0.13	-	-	4.19	-1.41	-1.42	-0.88	-2.25	-	0.19	-1.66	0.03
Lsat_1_v5_gn_5_165041.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_25561.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.94	-	-	-	-	-	-2.01	-	-
Lsat_1_v5_gn_5_33240.1 (IBI1)	-1.65	-	-	-4.04	-	-	-2.22	-2.57	-1.76	-	-2.69	-2.79	-2.53	-4.23	-3.19	-1.4	-	2.32	-	-	-	-	4.48	-2.51	-1.88	-	-4.15	-4.34	-1.2	-2.64	-1.08
Lsat_1_v5_gn_5_34221.1	-	-	-	-	-	-	-	-	-	-	-	-	-	1.15	-	-	-	0.74	-	-	-	-	4.76	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_77180.1 (SAP2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-0.04	-	-	-	-0.03	-	-	-	-	4.86	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_87741.1 (UMAMIT34)	-2.56	-1.5	-1.16	0.4	-	-2.45	-2.93	-4.31	-	-3.02	-2.49	0.77	-3.34	-	-	-	-	1.0	-	-2.39	-2.4	-	4.53	-	-	-3.5	-2.31	-0.98	-	-	-
Lsat_1_v5_gn_5_88881.1 (TTR1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.53	-	-	-	-	4.85	-	-0.75	-	-3.17	-	-	-	-
Lsat_1_v5_gn_6_100121.1 (NAC2)	-	-	-	-	-	-	-1.87	-	-	-	-	-	-1.23	-1.83	-	-	-1.83	-1.71	-	-	-	-	4.74	-	-	-	-	-1.25	-	-0.28	0.59
Lsat_1_v5_gn_6_103200.1 (CWC16b)	-	-	-	-	-	-4.12	-	-	-	-	-	-	-	-	-	-2.24	-	-0.01	-	-	-	-	4.86	-	-0.58	-	-	-4.32	-	-	-
Lsat_1_v5_gn_6_12141.1	-0.47	2.27	-0.36	-4.64	0.35	1.19	-4.34	-5.92	-4.47	-4.7	-3.35	-4.87	-1.69	-1.7	-1.62	-2.38	-3.64	1.59	-4.98	-4.72	-4.61	-4.89	3.96	-3.79	-3.82	-2.86	-3.92	-3.74	-3.14	-2.48	-3.58
Lsat_1_v5_gn_6_12161.1 (WRKY53)	0.32	1.91	-0.27	-3.48	1.38	1.48	-2.15	-2.99	-2.26	-2.55	-1.74	-2.89	0.47	0.05	0.23	-0.78	-1.68	1.21	-2.23	-2.48	-2.72	-2.84	3.23	-2.81	-2.48	-1.91	-2.89	-2.41	-1.57	-1.96	-3.12
Lsat_1_v5_gn_6_29301.1 (NAP12)	-	-	-	-	-	-	-	-	-	-	-	0.85	-	-	-	-	-	-	-	-	-	-	4.46	-	-	1.52	-	1.46	-	-	0.65
Lsat_1_v5_gn_6_32180.1 (MATK)	-	-0.85	-	-	-	-	-1.76	-1.97	-2.04	-	-	-2.35	-	0.08	-	-	-0.0	-0.68	-1.4	-	-0.36	0.34	4.41	-	-0.16	-2.17	-2.37	0.17	-1.21	-2.24	-
Lsat_1_v5_gn_6_55440.1 (RDM16)	-	-0.17	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.69	-	-	-	-	4.74	-	-	-	-	-	-	-	-2.2
Lsat_1_v5_gn_7_19561.1 (HSFA9)	-	-	-	-	-	-	-2.33	-2.1	-	-	-	-	-	-	-	-	-	-0.57	-	-	-	-	4.9	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_70341.1 (AAE9)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_105801.1 (PCN)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_131100.1 (MYB41)	-	-	-	-	-	-	-	-	-	-	-	-3.23	-4.14	-1.75	-	-	-	1.41	-2.28	-3.43	-4.45	-	4.76	-2.78	-3.21	-	-	-	-3.31	-3.98	-
Lsat_1_v5_gn_8_132661.1 (RSG2)	-1.94	-	-	-	-	-3.35	-1.48	-	-1.78	-	-1.62	-3.46	-	0.33	-3.11	-0.83	-1.11	0.55	-	-1.43	-	-1.02	4.55	-	-1.81	-2.37	-0.51	-	-2.33	-	-
Lsat_1_v5_gn_8_133381.1	-	-	-	-	-6.83	-6.63	-	-	-	-	-	-	-6.31	-6.39	-	-	-	2.12	-5.78	-	-	-	4.69	-3.84	-0.9	-	-	-	-	-3.45	-6.6
Lsat_1_v5_gn_8_139440.1	-	-	-	-	-3.02	-4.94	-	-	-6.22	-7.9	-5.71	-5.62	-4.34	-5.43	-3.26	-5.08	-5.78	0.72	-6.75	-5.92	-6.28	-6.17	4.83	-4.08	-2.0	-6.11	-6.73	-	-6.18	-5.37	-4.66
Lsat_1_v5_gn_8_139501.1	-	-	-	-	-4.29	-6.19	-	-	-7.87	-	-4.87	-5.04	-4.84	-5.05	-3.14	-5.23	-	-1.27	-	-	-	-	4.9	-4.72	-1.58	-5.63	-5.96	-6.67	-5.35	-6.23	-5.36
Lsat_1_v5_gn_8_153721.1	-4.55	-	-	-5.74	-2.4	-3.1	-5.32	-	-7.24	-7.08	-	-	-3.13	-4.35	-4.55	-4.03	-4.9	1.49	-5.1	-	-5.2	-6.91	4.75	-6.12	-1.62	-7.35	-5.83	-5.13	-	-3.79	-4.19
Lsat_1_v5_gn_8_17180.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.94	-	-	-	-	-	-	-	-1.86
Lsat_1_v5_gn_8_18540.1 (SKS1)	-5.15	-5.33	-	-3.27	-4.05	-2.62	-	-	-5.53	-	-	-	-3.89	-3.51	-	-4.24	-3.23	1.07	-3.56	-3.86	-3.5	-2.32	4.76	-5.74	-2.4	-3.64	-4.67	-2.04	-3.97	-4.42	-
Lsat_1_v5_gn_8_35741.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_43220.1 (HIPP21)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.87	-	0.24	-	-	-	-0.56	-	-
Lsat_1_v5_gn_8_67961.1 (SCL5)	-	-	-	-	-	0.69	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.73	-	-	-	1.48	-	-	-	-
Lsat_1_v5_gn_9_27320.1 (MATE)	-	-	-	-	-	-	-	-	-	-	-	-	-3.39	-	-	-	-	-2.15	-	-	-	-	4.85	-	-0.76	-	-	-	-	-	0.38
Lsat_1_v5_gn_9_37520.1 (NTR1)	-4.82	-4.82	-5.85	-4.05	-5.23	-4.86	-7.05	-4.72	-5.76	-5.72	-	-6.21	-3.51	-4.2	-7.02	-5.33	-4.01	2.98	-4.36	-7.38	-4.84	-3.6	4.45	-4.69	-3.08	-5.1	-4.38	-7.43	-4.8	-2.94	-3.12
Lsat_1_v5_gn_9_40880.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.22	-	-	-	-	4.87	-	-0.58	-	-	-	-	-	-
Lsat_1_v5_gn_9_43340.1 (POK1)	-	-	-	-	-2.51	-4.38	-	-	-	-6.17	-	-	-	-	-3.54	-6.26	-6.42	2.88	-	-	-	-6.05	4.51	-4.35	-1.4	-	-	-	-	-	-4.7
Lsat_1_v5_gn_9_71780.1 (TT1)	-	-	-	-	-	-	-	-	-	-	-	-	-2.14	-	-	-	-	-	-	-	-	-	4.88	-0.3	-1.26	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.