Heatmap: Cluster_56 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
-1.64 -1.33 -0.76 0.3 0.41 0.4 0.52 -0.07 0.3 0.26 -0.54 0.0 -0.51 0.2 -0.08 0.05 0.46 -2.5 -0.22 -0.05 -0.06 0.36 0.1 -0.43 0.53 -0.6 0.59 -0.46 0.06 0.01 0.75
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
0.6 3.04 0.74 -5.43 -17.41 -1.27 -10.07 - - -22.82 -10.12 1.03 -19.7 -14.08 -12.48 -0.26 - - -0.93 -11.61 1.91 -1.58 0.05 -13.77 -6.8 -7.98 -6.72 1.5 1.12 1.66 1.28
0.6 3.04 0.74 -5.43 -17.41 -1.27 -10.07 - - -22.82 -10.12 1.03 -19.7 -14.08 -12.48 -0.26 - - -0.93 -11.61 1.91 -1.58 0.05 -13.77 -6.8 -7.98 -6.72 1.5 1.12 1.66 1.28
- 2.07 1.06 - 0.19 0.4 - - 0.94 - - - - - - - - - 0.81 1.91 0.9 - - - 0.91 - 0.75 - 1.01 0.87 2.47
0.21 -1.07 -2.06 -0.01 -0.91 -2.23 0.58 0.83 -2.66 -0.21 -1.18 0.86 0.1 -0.03 1.26 1.58 -0.84 -2.31 - 0.37 0.46 0.3 -0.03 0.4 1.19 - -0.15 0.53 -1.76 0.04 -1.09
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- 4.15 - - - - - - - - - - - - - - - 3.54 - - - - - - - - - - - -0.58 -0.05
- - - - 0.32 - - 0.49 - - - - - - - - 2.31 2.77 - 2.7 - 0.44 - - - - - - - 1.24 2.66
0.6 2.25 -3.74 -2.11 0.03 -0.08 -1.02 -0.64 -0.48 -1.18 0.04 -1.53 0.4 -0.82 -0.32 -1.28 -0.75 0.04 -0.4 -1.09 -1.29 0.13 0.57 -1.18 0.6 -1.69 0.32 0.43 -0.42 -0.21 1.75
- - - - - - - - - - - - - - - - - - - 4.61 - - - - 1.71 - - - - 1.74 -
- 2.53 - 1.71 - - - - - - - - 2.23 - - 1.0 - - - - - - - - - - 0.65 - - 2.78 2.78
- - - - - - - - - - - - - 3.58 - - - - - 4.25 - - - - - - - - - - -
- 4.15 - - - 3.73 - - - - - - - - - - - - - - - - - - - - - - - - -
0.63 -0.66 -1.64 0.41 -0.5 -1.81 -1.95 1.25 -2.24 -1.68 -0.77 1.27 - 0.39 -13.81 2.0 -0.43 -1.89 - -0.47 0.88 0.72 0.38 - 1.61 - 0.26 0.95 - 0.46 -0.67
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.37 - - - - - 3.37 - - - - -
0.18 0.53 -0.31 1.84 -1.31 - 2.16 0.86 -1.39 -1.11 - - - -1.02 0.29 0.43 -1.1 -1.37 - 0.45 -0.68 -0.53 -1.08 -0.67 -0.27 -0.6 1.14 0.14 0.78 0.64 -0.46
- - - - 0.33 - - - - 0.53 - 1.32 0.34 - - 0.76 - 1.23 - 2.47 - - - - - 1.92 - - 1.82 0.27 2.68
- 0.94 -0.75 0.14 -0.27 - -0.34 1.49 0.02 - - 0.01 -0.95 1.68 - -0.76 -1.07 - - 2.89 - - 2.03 - - -0.91 - - 1.48 -0.86 -0.36
- 3.52 - - 1.86 - - - - - - - - 3.12 - - - 0.41 - - - - - 0.47 1.6 - - 0.49 - - -
- - - - - - - - - - - - - 3.11 - - - - - - - - - - 2.65 1.17 2.3 - 3.16 - -
- 4.65 - - - - - - - - - - - - - - - 1.59 - - - - - 1.54 - - - - - - -
-0.6 3.73 0.36 - 0.65 -0.42 - - - - - - -0.68 -1.57 -0.17 - -0.92 1.54 - 0.18 - -0.08 1.98 - - -1.11 -1.14 - - - 0.34
- 4.4 - - - - - - - - 3.3 - - - - - - - - - - - - - - - - - - - -
3.01 - - - - - - - - - -17.2 -7.31 - - 1.08 - - - 3.54 3.19 - - -4.06 - -21.47 - - -25.02 - - -17.37
- 3.91 - - - - -16.8 - - - 1.33 - 1.4 1.53 - - - - - - - - - - - - - 2.26 - - 1.63
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
0.63 - - - - - 1.11 - 0.32 - 1.01 1.39 - 0.76 0.51 -0.15 1.04 - 1.75 2.23 0.22 0.94 - - - - 0.76 0.35 - 0.3 -
0.07 2.4 - 1.59 -0.58 2.85 - 0.88 0.83 - - - 1.74 1.9 - - - -0.4 - - - -0.36 - -0.39 - - - - - - -0.35
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.66 0.72 - - - - - - -0.42 - 0.69 1.34 0.38 1.19 - 0.72 1.92 - - 1.46 - 1.18 - 0.44 0.47 - 0.69 0.43 - 1.66 -
-0.47 0.31 - -0.02 0.46 -0.23 0.64 -0.63 -0.68 -1.08 1.16 0.9 -0.62 -0.86 -1.58 - -1.47 0.05 -0.91 -0.34 0.95 -1.73 1.54 -2.82 -1.82 -0.85 1.41 -0.64 0.42 0.23 1.17
-2.66 1.43 1.5 2.23 -1.6 1.88 -1.95 0.05 -1.37 -1.5 -2.82 -3.0 1.12 -2.82 -1.81 0.35 -0.62 1.5 -3.21 -2.17 -1.48 -1.73 0.43 - - - - -2.99 -1.9 -0.19 1.74
0.94 - - - - - 1.42 - 0.63 - 1.32 1.7 - 1.06 0.82 0.16 1.35 - 2.06 - 0.52 1.25 - - - - 1.07 - - 0.6 -
- - - - - - - - - - - - - - - - - - - - - - 3.99 - - - - - - - 3.92
- 3.11 - - - - 3.13 - - - - - - - - - - 2.65 - - - - - - - - 2.88 - - - -
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- -1.43 - -0.95 -0.9 0.83 0.88 -0.28 -0.24 -0.15 0.71 -0.19 0.15 1.11 0.26 -0.7 0.03 -1.09 -0.5 1.54 -0.45 0.53 0.62 -1.09 0.94 - 0.58 -1.8 -1.65 -0.28 0.74
- 2.18 0.76 - -0.09 -1.03 0.33 -0.55 - - - - 1.8 - - 0.35 0.79 1.84 -0.63 - 1.23 - 1.4 - -0.7 - - 0.18 0.54 0.23 0.41
- 1.32 1.73 2.85 - -0.69 -0.52 0.23 - -0.69 - - -0.4 0.71 1.05 1.36 -0.64 - - - - - - 0.79 -0.64 - - -0.57 - 0.58 1.4
- 4.04 - - - - 2.35 - - - - - - - - - - - - - - - - 2.28 - - 2.2 - - - -
- - - - - - - - - - - - - - - - - - - 3.9 - - - - - - - - - 4.01 -
- 2.02 - - 1.86 1.89 - 0.25 0.43 0.59 - - 0.5 0.82 0.81 - - 1.88 - -1.1 0.25 -0.56 - -0.87 - - -0.63 -0.8 - 1.07 -0.4
- 1.77 -1.62 0.39 -1.91 -0.87 0.42 -0.31 -0.78 0.18 - - - 1.37 0.28 0.61 0.41 0.54 -0.01 -2.13 -2.15 - 1.42 -1.0 -0.4 -2.09 1.45 - -0.01 0.33 1.36
0.92 - - - - - - - 0.61 - 1.3 1.68 - 1.05 0.81 0.15 1.33 - 2.05 - 0.51 1.24 - 1.58 - - 1.05 - - 0.59 -
- 2.19 - - 1.69 -0.25 - - 1.98 - - -0.33 - 2.44 2.3 - -0.32 - 0.19 - -0.35 - 1.49 -0.2 - - - - -0.26 - -
- - - 1.58 - - - - - - - - - - - - 1.68 - - 2.56 1.58 - 3.29 - - - - - - - 2.61
- 2.85 - 0.49 - 0.18 - - - 0.03 - - 1.14 - - - - - - 1.95 - - - - - - - - 1.08 0.01 3.47
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
0.13 1.12 -0.33 - 0.35 0.3 -0.71 -0.15 -0.76 - -1.91 0.13 -2.22 1.11 0.05 - -0.62 -1.26 1.3 1.55 1.19 -0.77 0.86 -2.15 - 0.95 1.11 0.45 -1.04 -2.09 -
-0.84 1.87 2.05 -0.27 -0.39 -0.25 0.4 -1.01 -0.78 - - - -0.94 0.79 -1.05 - -0.54 -0.29 -2.26 -1.31 -2.43 - - -1.28 0.59 0.92 0.77 1.01 -1.14 1.58 0.84
- 3.97 - - - - - - - - - - - - 3.94 - - - - - - - - - - - - - - - -
- 1.87 - - 0.48 0.47 - - -0.92 -1.16 0.69 - 1.02 0.68 2.65 -0.93 -1.22 - -0.29 1.75 1.51 -0.12 - 0.87 -0.08 - - - -1.18 - -
- 2.22 - - - -0.19 2.24 - - -0.17 - - - 1.03 0.04 - - - 0.79 1.68 - 0.13 2.35 0.83 - - - 0.94 -0.14 0.09 -
- - 2.69 1.68 - - - 1.46 - - - - - - - - - - 0.79 3.84 - - - - - - - - - 1.32 -
0.15 -1.14 -2.12 -0.07 - -2.29 -2.43 0.76 -2.73 -0.27 -1.25 0.79 0.04 -0.09 1.2 0.38 0.89 -2.38 - 1.42 0.4 0.75 -0.1 0.84 1.13 - -0.22 0.47 -1.83 0.58 -0.24
- - - 1.19 1.85 -1.68 -1.75 - - 0.98 - -0.33 -1.49 0.02 -0.56 - 1.52 -2.0 0.84 0.08 - -0.6 - -0.21 -0.8 1.88 0.7 - 0.87 0.42 1.66
- - - - 2.17 - - 2.33 - - 3.3 - - - - - - - - 3.54 - - - - - - - - - - -
- 3.9 - - - - - - - - - - - - - - - 4.01 - - - - - - - - - - - - -
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 4.55 2.59 - - - - - 0.6 - - - - - - - - - - - - - - - - - - - - - -
- 3.53 - - 1.29 - - - - - - - - - - - - - - 1.46 - - - - - - 2.96 - 1.57 1.81 -
- 1.5 1.08 - 1.44 0.13 - -1.99 - -1.89 0.53 - -0.82 - 0.84 -0.52 - -0.38 -1.08 -0.97 - -0.6 1.53 0.02 -1.93 -1.18 -0.65 -1.79 1.52 1.73 1.64
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 2.64 - 0.47 0.78 - 0.33 - - - - - - - 1.48 1.45 0.28 - - - - 2.4 2.02 - - - 0.6 - 1.51 - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
0.34 1.9 -0.66 0.25 1.72 -0.1 -1.1 - - -0.58 0.39 - 0.49 1.16 1.52 -0.56 0.48 - 0.25 0.72 - - - - -0.76 - 1.08 -0.06 -0.87 0.89 -
- 3.24 - - - 3.37 2.25 - - - - - - - - - - - - - - - - 2.69 - - - - - - -
-2.1 0.25 -1.14 0.87 1.51 0.53 -0.42 -0.47 -0.02 - 0.47 -2.58 -0.77 0.15 1.06 0.02 -1.39 - - -0.24 -1.01 -2.15 0.96 0.07 -0.47 -1.01 -0.3 -0.3 1.36 0.99 0.89
- - - - 1.29 2.83 - - - - - - - - 2.36 - - - - 2.52 1.5 2.29 - - - - - - - 0.5 0.56
-0.05 -1.34 -2.32 -0.27 -1.18 -2.49 0.32 0.57 -2.92 -0.47 -1.44 0.59 -0.16 -0.29 1.0 1.32 0.69 -2.57 - 1.77 0.2 0.55 -0.3 0.64 0.93 - -0.42 0.27 -2.02 0.38 -0.43
- 3.13 - - -17.9 - - - 1.52 - 1.67 - - - - - -17.37 - - -18.4 -12.39 - -9.23 - 1.66 - - - - 2.77 2.64
-0.5 - 1.35 - 2.51 - - -0.67 -0.87 - - - 1.0 - 1.16 -0.25 2.59 -0.91 0.31 1.84 - - - - - 0.91 -0.45 -0.8 -0.6 -0.8 -
- - - - - 1.78 - 1.55 - 0.66 - 2.83 - - - - - - - 3.4 - - - 2.02 - - - 0.41 - - -
- - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - -
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.07 2.5 1.93 - 0.27 0.65 - 1.45 - - -0.15 - 1.02 - - 0.35 - - - - - - - - - - 2.08 0.75 - 2.31 -
- 2.44 - - 0.24 - - - 0.37 - 1.59 - - 0.72 1.74 - - 1.45 - 3.37 - - 1.04 - - - - - - - -
- 2.74 - - 1.47 - - - - - - 2.28 - - - 1.99 - 1.84 1.22 - - - - 0.07 - - - 0.18 2.2 - -
Lsat_1_v5_gn_8_1701.1 (PGR5-LIKE A)
- 4.1 - - 2.16 2.26 - - - - - - - - - - - 2.19 - - - - - - - - - - - - -
- - - - - 1.66 - - 3.16 - - - - - 3.21 1.33 - 0.89 - 1.75 - - - - - - - - 0.93 - -
- 3.0 - - - - - - 2.78 - - - - - 3.18 - 2.82 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.32 - - - - - - - - - - 3.46
- - - - - - - - - - - - - - - - - 1.26 2.13 1.17 - 1.62 - - - 1.04 - 1.11 1.27 2.87 2.31
- 3.72 2.57 3.57 - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.82 1.15 -0.92 0.6 -0.63 -1.65 - -0.28 0.1 1.23 - -1.21 -1.66 1.0 1.8 0.25 1.28 - - 0.28 0.11 - - -1.55 0.96 0.31 -1.68 - -0.39 1.32 0.79
-1.05 1.28 -0.88 -1.13 1.3 0.76 1.74 1.6 -1.1 -3.62 -1.23 -3.61 -2.32 0.96 -0.7 -1.41 -3.12 0.52 -1.6 -0.63 -0.65 -0.21 0.37 -0.54 -0.37 -1.53 -1.63 0.05 -0.33 0.28 0.91
1.48 1.72 -0.61 0.35 1.27 -0.23 1.05 - - -0.94 - - 0.3 - -0.78 -0.7 - -0.95 - - -0.75 - 0.31 - - 1.16 1.97 -1.04 2.31 -0.43 -
- 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 2.45 - - -0.22 -0.14 -0.06 1.02 0.01 0.87 - 0.84 - 1.73 - -0.0 - -0.26 -0.37 - -0.33 - - - - -0.33 2.01 -0.18 -0.08 0.08 0.79
- 3.53 - - - - - - - - - - - - 3.93 - - 2.07 - - - - - - - - - - - - -
- - - - - 2.7 - - - - - - - 3.25 - - - - - 3.9 - - - - - - - - - - -
- 2.97 - 1.83 - -9.76 - -8.46 - 0.35 -0.15 - - 2.93 - - - - 0.85 - -6.52 - - - - - - - 3.0 - -
1.65 - - - - - - - 3.1 - - - - - 2.66 - - - - - - - - 1.37 - - 2.21 1.38 - 1.67 -
- - 2.14 - - - - - - - - 1.78 - 2.34 - - - - - 3.02 - - 3.32 - - - - - - - -
- 1.85 0.58 1.02 0.54 2.38 -0.13 -1.13 - - - 0.5 1.95 - - 1.1 - -0.43 - - - - 0.67 - - - - 0.51 -1.23 1.79 -0.37
- 3.5 - - - - - - - - - - 3.11 3.47 - - - - - - - - - - - - - - - - -
0.72 2.15 -0.79 -0.23 0.4 0.57 - -2.1 -0.06 -2.73 0.9 -0.33 0.41 1.59 0.33 0.1 -2.62 - 0.19 -1.39 -2.02 -1.22 0.99 -0.65 0.5 -1.57 -2.76 -0.35 -3.03 -0.7 0.69
- - 0.74 - 1.6 - - -0.01 -1.39 - 0.72 0.34 - - -1.15 0.86 1.65 0.18 -0.4 1.81 -1.42 0.45 1.04 - - 1.16 -0.15 -1.1 0.24 0.33 0.46
- 1.52 0.45 - -0.52 1.73 - - -0.73 -0.68 - 0.42 0.48 2.1 1.19 - - -0.73 - - - - 1.26 -0.39 - 0.37 0.88 -0.49 1.24 -0.29 0.53
- - - - - - - - - - - - - - - - - - - 4.31 - - 3.48 - - - - - - - -
- - - - - 2.8 - - 3.07 - - - - - 3.12 - 2.8 - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.