Heatmap: Cluster_153 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_14841.1 (OMT1)	-2.86	-0.86	-	-0.86	-0.59	-0.9	-0.19	0.75	-1.02	-0.5	-3.07	-1.43	-1.03	0.95	-1.08	-1.51	-2.34	2.25	-0.03	-1.78	-	-2.95	3.16	-1.27	-0.31	-0.26	-2.08	0.03	-0.61	-0.75	0.29
Lsat_1_v5_gn_0_46680.1 (GolS5)	-	-	-	-	-	-	-	-	-	-	-	-	-	2.86	-	-	-	3.98	-	-	-	-	2.99	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_0_5360.1	-	-	-	-	-	-	-	1.32	-	-	1.3	-	1.38	1.49	-	-	-	3.03	-	-	-	-	2.59	-	-	1.95	-	-	-	1.36	-
Lsat_1_v5_gn_0_8321.1 (LBD38)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.37	-	-	-	-	3.37	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_114120.1 (MYB93)	-	-	-	-	-	-	-	-	-	-	-	-	-	-1.98	-0.98	-	-	3.53	-	-2.36	-	-	4.15	-	-	-	-0.43	-	-	-	-
Lsat_1_v5_gn_1_13061.1 (PII1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.83	-	-	-	-	4.58	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_46280.1	-	-1.58	-	-	-0.37	-	-	-	-1.86	0.16	-0.91	-	-	1.1	1.27	-1.86	-	3.43	-	-3.17	-	-	3.52	-	-1.06	-	-	-	-1.89	-	-
Lsat_1_v5_gn_1_80360.1 (MEKK4)	-	-	-	-	-	0.34	-	-	-	-	-	1.18	-	0.53	-	0.58	-	2.82	0.71	-	-	-	3.4	-	-	-	-	0.12	-	0.24	1.59
Lsat_1_v5_gn_2_11421.1 (SWEET9)	-	-	-	-	-	-	-	-	-	-	-	-	-	1.16	-	-	-	2.93	-	-	-	-	4.1	-	-	0.72	-	-	-	1.26	-
Lsat_1_v5_gn_2_12041.1	1.44	0.05	-0.05	-	-	0.98	-	-1.14	-	-	-	-	-	-	-	-	-	1.79	-	-1.5	-1.4	-	4.14	-	-	-1.5	-1.19	-0.33	-1.33	-	-
Lsat_1_v5_gn_2_131741.1 (TRM18)	-	-	-	-	-	0.63	0.64	-	1.83	-	-	-	-	2.78	0.87	-	-	3.39	-	-	-	-	-	-	-	-	-	-	1.71	-	0.91
Lsat_1_v5_gn_2_37100.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.85	-	-	-	-	3.45	-	-	-	-	-	-	-	2.49
Lsat_1_v5_gn_2_70140.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.01	-	-	-	-	4.52	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_79040.1	-	-	-	0.07	-	-	-	-	-1.12	-	-	0.16	-0.12	0.92	-	-	-	3.47	-0.47	-1.43	-	-	2.71	-	-	-	-	-	-0.29	-0.31	2.38
Lsat_1_v5_gn_2_83720.1 (GAE1)	-	-	-	-	-	0.17	-	-	-	1.43	-	1.4	-	-	0.36	-	-	3.38	-	-	-	-	1.73	-	-	-	-	-	1.24	-	2.84
Lsat_1_v5_gn_2_86260.1	-	-	-	-	-	-	-	-	-	-	-	0.12	-	0.49	0.61	-	-	-	0.39	-	-	-	4.43	-	-	-	-	1.49	-	0.45	-
Lsat_1_v5_gn_2_86500.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.39	-	-	-	-	3.32	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_92920.1 (FIGL1)	0.19	-	-	-	0.82	-	-	-0.31	-	1.01	-0.11	-	-	-	-	-	-	1.54	0.58	-	-	-	4.2	0.66	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_98221.1 (TMT2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.93	-	-	-	-	4.55	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_105781.1 (bZIP58)	-	-	-	-	-	-	-	-	-	-	-	-	0.34	-	-	-	-	2.61	-	-	-	-	4.31	0.14	1.13	-0.93	-	-	-	-	-
Lsat_1_v5_gn_3_110361.1 (PATL2)	-1.17	-	-	-	-	-0.58	-0.57	-	-1.71	-	-	-	-0.51	0.95	-	-1.27	-	2.49	-	-	0.85	-	3.98	-0.03	-1.59	-0.77	-	-	-	-1.29	-1.57
Lsat_1_v5_gn_3_139561.1 (CNGC16)	-1.52	-1.55	-	0.34	-	-	-	-	-1.27	-	-	-	-1.14	-	-	-	-	3.32	-	-	-0.29	-	4.08	-	-	-1.82	-	-2.16	-	-	-
Lsat_1_v5_gn_3_49620.1 (GASA3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.71	-	-	-	-	4.61	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_8360.1 (HYC1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.51	-	-	-	-	4.29	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_111620.1 (LPR2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.53	-	-	4.05	-	-	-	-	2.94	1.29	-	-	0.57	-	-	-	-
Lsat_1_v5_gn_4_146781.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.09	-	-	-	-	3.81	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_162300.1 (APG6)	-	-	-	-	-	-	1.92	-	-	-	2.0	-	-	-	-	-	-	3.88	-	-	-	-	3.09	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_185280.1 (IRX15-L)	-	-	-	-0.75	2.17	-	-	-	-	-	1.44	-	-	-	-0.22	-	-	2.81	-	-	-	-	3.32	0.17	-	-	-	-	1.31	0.8	-
Lsat_1_v5_gn_4_300.1	2.31	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-0.95	-0.87	-	-	-	-	4.44	-0.86	-	-	-0.98	1.12	-	-	-
Lsat_1_v5_gn_4_33221.1 (SEL1)	-	-	-	-	-	0.71	-	-	0.48	-	-	-	0.76	-	-	-	-	2.57	-	-	-	-	3.95	-	-	-	-	-	1.76	0.55	-
Lsat_1_v5_gn_4_37821.1	-	-	1.67	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.56	-	-	-	-	4.0	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_4860.1 (PGX1)	-	-	-	-	-	-	-	1.28	-	-	-	-	1.08	-	0.25	-	-	3.29	-	-	-	-	3.96	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_82421.1 (HSD1)	-	-	-	-	-1.31	-	-	-	-	-	-	-	-1.32	-	-	-	-	3.72	-	-	-	-	3.79	-0.83	-0.43	-	-	-1.24	-2.41	-1.39	-0.09
Lsat_1_v5_gn_5_153640.1 (BCB)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.85	-	-	-	-	4.05	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_171940.1 (FLOT1)	-	0.02	-	-	-0.46	-	-	-	-	0.81	-	-	-	1.66	-	-	-	2.15	-	-	-	-0.04	4.19	-	-	-	-	-0.43	-	-	-
Lsat_1_v5_gn_5_181201.1 (LECRKA4.2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.37	-	-	-	-	4.37	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_182700.1 (RIC7)	-1.59	-	-	-	-0.11	0.46	-1.34	-1.0	-	-1.76	-	-1.05	0.4	1.15	1.01	-2.75	0.19	2.57	-0.61	-2.08	-	-0.48	0.91	-0.68	-1.45	0.42	0.11	-0.53	-1.95	-0.76	2.45
Lsat_1_v5_gn_5_19220.1 (HIR4)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.5	-	-	-	-	3.05	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_6041.1 (mCSF2)	-	-	-	-	-	-	-	-	-	0.38	-	-	-	-	-	-	-	3.99	-	-	-	-	3.79	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_85001.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.03	-	-	1.11	-	3.33	-	-	-	-	-	0.39	-	0.25
Lsat_1_v5_gn_6_111621.1 (STK)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.85	-	-	-	-	4.05	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_116160.1 (ADCP1)	-	-	-	-	-	-	-	-	-	-	-	-	0.95	-	-	-	2.05	2.2	-	-	-	-	4.35	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_12881.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.57	-	-	-	-	3.53	2.93	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_17840.1 (PVA12)	0.53	-1.25	-	-2.32	-2.89	-1.66	-	-	-	-2.63	-0.43	-2.61	-1.47	-2.45	-	-2.36	-0.77	3.34	-	-1.78	-1.84	-0.49	3.56	-	-	-2.78	-	-1.27	-0.31	-0.18	-0.65
Lsat_1_v5_gn_6_44380.1 (BCB)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.55	-	-	-	-	4.27	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_60741.1 (RPOC1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.98	-	-	-	-	-	3.93	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_78421.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.63	-	-	-	-	4.63	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_83401.1 (SWEET7)	-0.89	-2.31	-1.73	-	-0.61	-1.15	-0.45	-0.33	-0.97	0.13	-2.69	-0.2	0.15	0.08	0.37	-0.82	-0.69	2.14	1.17	-1.29	-1.54	-1.9	2.66	-2.22	-2.13	-	-0.68	-1.81	0.23	-0.36	1.46
Lsat_1_v5_gn_6_89361.1 (GolS5)	-	-	-	-	-	-	-	-	-	-	-	-	-	2.86	-	-	-	3.98	-	-	-	-	2.99	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_93920.1 (UBP18)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.62	-	-	-	-	4.23	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_106901.1	-	-	-	-	-	-	1.18	-	-	-	-	-	-	0.96	-	-	-	4.06	-	-	-	-	3.04	-	-	-	-	-	0.89	-	-
Lsat_1_v5_gn_7_22241.1	-3.66	-4.61	-	-	-1.33	-1.69	-3.37	-	-4.16	-4.14	-	-5.22	0.04	-1.2	-1.87	-4.82	-4.22	3.13	-2.25	-2.57	-4.23	-3.78	4.17	-5.13	-2.12	-	-4.24	-	-3.39	-1.84	-3.14
Lsat_1_v5_gn_7_52361.1 (PGM2)	-	-	-	-	-	1.28	1.57	-	-	-	-	-	-	1.75	-	-	-	1.52	-	-	1.46	-	4.06	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_7341.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.41	-	-	-	-	4.35	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_53881.1 (CDL1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.55	-	-	-	-	4.27	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_18000.1 (TCX4)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.75	-	-	-	-	4.6	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_54521.1 (RR14)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.5	-	-	-	-	4.3	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_64661.1 (LBD29)	-	-	-	-0.12	-0.83	0.11	-2.28	-	-	-2.21	-0.38	-1.42	0.79	-0.52	-0.64	-0.12	-	2.94	-2.48	-	-0.6	-1.14	1.9	-1.44	-1.48	-0.82	-2.27	-2.33	0.38	-0.03	2.64
Lsat_1_v5_gn_9_92860.1	-	-	-	-	-	-	-	-	-	2.93	-	-	-	-	-	-	-	3.22	-	-	-	-	3.24	-	-	-	-	-	-	-	2.2
Lsat_1_v5_gn_9_93560.1	-	-	-	-	-	-	-	-	-	-	-	-	2.38	-	-	-	-	3.35	-	-	-	-	3.96	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.