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Heatmap: Cluster_161 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - - - - - - - - - - - 3.09 - 3.32 - - - 2.29 - 1.08 - - - - - 1.44 - 1.48 -
- -0.61 - -0.72 - -1.13 1.39 - - - - - - - 0.77 1.41 1.92 - -0.67 0.17 2.18 2.54 0.67 - - - - - - 1.02 1.47
Bra001536 (HAOX2)
 -0.36 -0.39 0.13 -0.41 0.13 -0.25 -0.17 -0.14 -0.67 0.13 -0.02 -0.15 0.67 0.38 0.12 0.64 0.1 0.31 0.42 -0.0 -0.12 -0.11 0.67 -0.18 -0.39 -0.44 -0.48 -0.47 -0.81 0.32 -0.01
Bra001916 (HAC1)
 - 1.18 0.03 - 1.5 1.77 0.62 - - -1.15 -0.39 1.88 - 0.59 1.25 - 1.23 0.05 1.07 0.9 -1.14 - - - - - - - 0.57 -1.08 0.46
-1.7 -2.08 -3.13 -2.24 -0.94 -1.93 -2.04 1.79 -2.16 -2.84 -1.95 -2.01 -0.94 -0.88 -2.39 2.03 -3.57 -0.99 -2.32 2.21 -2.11 2.94 -0.22 -0.78 -0.56 -1.1 -0.61 -0.41 -0.65 -0.98 -0.04
- - - - -0.62 - 1.84 - - 1.03 0.48 - -0.42 0.75 - 2.99 -0.46 -0.66 - - - -0.65 1.82 - - - - - - -0.51 2.75
- - - - - - - - - - 2.29 - 0.93 - - 2.91 2.32 2.4 - - - - 2.68 - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra004640 (FEX)
 0.38 -2.39 -1.25 -0.97 -0.58 -0.06 0.6 -1.29 0.28 0.59 0.55 0.22 0.13 1.84 0.89 0.82 0.03 -0.9 -2.76 0.34 0.02 -0.03 -0.46 0.45 -1.66 -0.59 -1.14 -0.64 -0.18 -0.68 -0.45
Bra004711 (LSH10)
 -1.39 -2.62 -3.05 -2.0 -0.8 -0.21 -1.53 -1.64 0.92 0.21 0.41 -0.8 0.47 -0.69 0.89 1.31 0.13 -0.04 0.41 0.7 -0.16 0.55 1.47 -1.04 1.09 -0.01 -0.58 -0.61 -1.05 -1.45 -0.41
- - - - 0.11 -1.06 - - 1.07 - -0.25 -1.1 - - -0.72 2.85 - - - 0.85 2.04 2.51 - - 1.16 - 1.37 - - - 0.86
Bra007983 (CEL3)
 -1.38 0.16 1.07 -1.34 0.41 -0.16 -1.71 -2.44 0.02 0.32 -0.47 -0.76 -0.5 -1.3 0.89 2.06 0.33 1.18 -0.82 -2.3 -3.22 1.3 -0.11 0.23 0.51 -0.17 0.12 -1.91 -2.23 -0.87 -2.45
- - - - -0.16 - - 0.77 -0.29 1.48 1.29 0.86 - - 2.23 2.43 2.29 - 1.24 - - - - 0.1 - - - - 1.1 - -
-1.0 -2.51 -2.28 -1.93 -1.42 -1.05 -0.09 -1.28 0.83 0.35 0.84 -0.47 1.1 -1.51 -0.85 0.94 -0.45 1.36 0.55 0.76 -0.7 1.0 0.12 0.26 0.56 0.31 0.1 -0.59 -1.39 -0.8 -1.48
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra009238 (PGIP2)
 -1.1 -1.48 -0.65 -0.88 -1.38 -0.52 0.46 0.24 0.55 0.77 0.17 0.13 0.68 -0.59 -0.59 0.77 0.7 0.83 0.2 0.14 -0.3 0.23 0.69 0.0 0.05 -0.19 -0.71 -0.99 -0.72 -0.28 -0.72
Bra010204 (ATL58)
 - - - - - - - - - - - - - - - 3.64 - 4.21 - - - - - - - - - - - - -
- - - - - 1.61 0.48 1.78 - 0.52 - - - 1.82 - 2.43 2.75 - - - - 2.6 - - - - - - - - -
-2.43 -0.87 -0.06 -2.82 - -0.19 0.87 2.11 -0.6 0.61 0.4 1.5 1.47 -2.55 -1.21 1.92 1.45 -0.33 -0.71 0.75 0.83 -0.16 - - - - - - - - -2.69
- - - - - - - - - - 3.67 - - - - 3.27 - - - - - - 3.11 - - - - - - - -
- - 0.99 - - - - - - - 1.73 1.67 2.42 - - 2.91 - - - - - 1.59 2.73 - - - - - - - -
Bra012647 (IRP3)
 - - - - - - - - 1.8 - - 1.6 - 2.82 - 3.53 - 1.64 1.48 - - - - - - - - - - - -
- 1.14 - - - - - -1.71 0.59 -0.55 0.07 - 0.63 - - 2.27 1.85 - - - 0.67 1.14 1.74 - 1.14 -0.55 0.57 0.2 -1.34 0.87 -1.39
Bra013245 (HCR1)
 -1.3 0.03 0.34 -0.77 0.2 -2.26 -1.23 -0.5 0.04 0.63 0.18 0.25 0.63 1.46 0.84 1.02 -0.52 0.4 1.02 0.54 0.13 -1.04 -0.33 -1.26 -1.8 -0.57 -1.0 -0.46 -1.31 -0.82 -0.38
- - - - - -1.58 0.65 -0.66 - 1.5 1.23 -1.64 - - 0.7 2.05 2.86 - 1.6 - 2.11 1.4 - - - - - - - - -
Bra015593 (TRB1)
 0.46 0.6 -0.41 1.05 1.59 1.11 0.06 0.44 0.9 -0.18 -0.8 - -1.23 - 1.5 0.85 0.5 0.86 0.91 1.84 -0.62 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra016841 (PMR2)
 - - - - 2.74 - - - - - - - - - - 4.61 - - - - - - - - - - - - - - -
Bra017084 (PLP6)
 - - - - - - - - - - 1.76 - - - - 3.53 - - - - - - - - - - 0.89 2.95 - 2.24 0.8
Bra017525 (MSP2)
 - - - - - - - - - - - - - - - 4.03 - - - - - - - - - - - 3.88 - - -
Bra017550 (CPNB3)
 -0.5 1.15 0.88 0.34 1.37 1.96 -0.82 0.11 -0.14 -0.67 -0.55 -1.28 -0.17 - -0.91 -1.65 0.06 -0.23 2.04 1.61 1.16 0.03 - - - -3.81 - -3.86 - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra018244 (GUN1)
 - - 1.44 - - -0.41 - - - 0.5 - - 0.82 -0.08 - 2.99 1.28 - - - - 0.6 1.9 1.44 - - - - 2.33 - -
Bra018275 (INH3)
 - - 0.82 1.41 1.57 - 2.2 - - - -0.41 0.02 - - - 1.45 - - -0.25 - - - 1.81 - 1.73 1.44 -0.24 -0.13 0.71 -0.4 -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra019813 (SID2)
 - - - - - -0.47 1.27 - 1.22 - - - 2.54 -0.23 -0.16 2.77 - 1.63 - -0.38 -0.42 - -0.48 - 0.1 - - - 2.26 - -
Bra021178 (MEE36)
 -0.17 0.12 1.27 -0.09 0.47 0.94 0.55 -0.94 0.59 0.16 -0.95 0.63 -0.07 0.58 1.03 0.57 0.53 -0.25 0.3 -1.02 -1.65 -0.01 -1.45 -1.69 -1.28 -1.13 -0.14 -1.4 -0.91 -1.31 -0.64
Bra024196 (AAT)
 0.28 -0.08 0.11 -0.22 0.31 0.7 0.07 0.25 -0.33 -0.21 -0.72 0.13 -0.02 0.37 0.66 -0.46 0.19 -0.01 -0.31 -0.35 -0.07 -0.01 -0.03 -0.08 -0.19 -0.51 0.05 -0.42 -0.19 -0.24 0.22
Bra024507 (SDN2)
 - - - - - - - 2.0 - - - - - - - 3.27 - - - - 2.14 - 3.16 - - - - - - 1.99 -
Bra024850 (TMK3)
 - -1.23 - - - -1.69 -1.9 0.46 -0.67 -0.61 -0.1 1.14 0.59 -1.31 - 2.07 0.82 - 0.77 0.43 -0.73 1.9 - 0.56 -1.59 -0.27 1.89 0.6 - 0.09 -
- - - - - - - - 3.26 - - - - - - 4.42 - - - - - - - - - - - - - - -
Bra024962 (PHL1)
 -1.02 -0.29 -1.08 -0.76 1.14 1.77 -0.39 0.21 0.29 -1.63 -0.3 -0.71 -0.6 -7.69 -0.42 -0.24 0.36 -0.24 0.59 0.96 0.77 1.1 -0.38 -0.44 -0.62 -0.73 -0.2 -0.88 -0.51 -0.44 -0.32
Bra025133 (HP30)
 - - - - - - - - - - - - - - - 4.02 3.88 - - - - - - - - - - - - - -
-2.73 -1.74 -0.14 0.53 0.1 1.32 0.52 0.34 -0.12 -2.41 -2.1 -1.35 -0.08 0.27 1.15 -0.45 0.28 - 1.19 0.93 -1.0 -1.2 -0.77 -0.66 -0.23 0.55 -0.66 0.19 1.01 -0.06 -1.06
-0.29 -0.4 -0.61 -0.47 -0.64 -0.11 0.43 -0.06 0.13 0.49 0.22 -0.1 0.31 -0.12 0.1 0.68 0.52 0.13 0.21 0.25 0.15 0.42 0.96 -0.54 -0.41 -1.23 -0.44 -0.87 -0.37 -0.63 -0.14
- - - - - - -3.27 - -0.34 0.7 1.76 1.27 1.1 -0.68 - 2.4 1.6 1.49 -0.43 -1.95 1.12 -0.26 2.17 -3.0 -2.7 - - - - - -
- - - -1.54 - -1.93 1.55 2.3 -1.83 -2.01 0.98 0.73 -1.74 1.3 - 1.49 2.09 0.81 1.16 1.15 -1.88 0.64 - - -0.95 - - - - - -
Bra027613 (MSH7)
 - - - - - - - - - - - - - - - 3.9 1.29 - - 3.24 - - - - 2.07 - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
- - - - - - 1.99 1.17 - - 1.09 - - - 1.49 2.43 3.3 1.12 - - - - - - - - - - 1.29 - -
Bra028396 (SEC8)
 - - - - - - - - - - - - - - - 4.24 - - - - - - - - 2.0 3.02 - - - - -
Bra030301 (SRS3)
 2.33 - - - - - 1.89 - - 0.5 0.36 - 1.69 - - 0.7 2.93 - - 2.13 0.51 0.39 - - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
- - - - - 1.35 0.09 - - 0.36 0.41 1.37 - 2.26 1.64 2.6 0.55 - - 2.75 - - - - - - - - - - -
- - - - - - 2.42 2.54 - - - - - - - 2.79 - 3.69 - - - - - - - - - - - - -
Bra031861 (PICALM10c)
 - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra032683 (MGT6)
 - - - - - - 1.79 - - - - 1.94 2.21 - - 3.89 2.1 - - - - - - - - - - - - - -
Bra033263 (AtMLKL1)
 - - - - - - - - - - - - - - - 4.03 - 3.88 - - - - - - - - - - - - -
-2.2 -1.39 -1.33 -2.12 -0.09 -0.49 -0.92 -1.14 0.02 0.33 0.43 0.15 0.59 0.27 0.54 0.42 0.13 0.42 -0.55 0.46 0.38 -0.09 0.92 0.35 0.21 0.56 0.49 -0.92 -0.51 -0.56 0.09
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
- - - - - - - - -0.61 - - - 2.51 - - 3.35 -0.37 - - - 1.57 - -0.5 - - 1.46 - 2.02 -0.28 -0.42 0.68
Bra034506 (CDS1)
 2.33 - - - 1.71 2.96 - - - - -0.12 -0.13 - 2.42 - 2.56 - - 0.9 - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra034652 (PES)
 -0.05 -0.77 0.63 0.57 1.52 1.46 -0.71 -0.57 -0.13 -0.9 0.59 -0.24 1.17 1.27 -1.14 0.72 -1.28 0.37 1.0 -0.86 0.4 0.07 -1.23 -1.81 -2.34 -2.54 -1.9 -3.4 -2.32 -2.1 -1.1
- - - - - - 2.98 - - - - - - - - 3.89 - - - - - - - - 3.04 - - - - - -
Bra035209 (SVL1)
 -3.65 - - - -0.43 -0.02 -1.69 -1.87 0.88 0.21 0.43 1.29 1.21 0.16 -0.95 1.25 -1.46 0.5 -0.47 1.43 0.25 0.46 0.84 -1.36 -0.46 -0.48 -1.26 -0.64 -0.48 0.28 0.18
Bra035306 (MYB60)
 - - - - 2.2 - - - - - - - - - - 4.08 - - - - - - 3.25 - - - - - - - -
- - - - - - - - - - - - - - - 4.61 - - - 2.71 - - - - - - - - - - -
Bra035376 (MEF25)
 - - - - - 2.13 - 1.9 - 0.17 - - 1.35 0.25 0.59 - - - - - 2.48 2.07 - - - - - - - 1.89 1.61
Bra036130 (CBP60G)
 -0.13 -0.01 1.23 0.31 0.96 1.89 -0.41 -1.98 0.32 0.79 -0.12 0.28 -0.29 -2.15 0.89 -1.23 0.06 -0.1 1.22 0.28 0.17 0.26 -3.11 -1.3 -2.11 -1.17 -0.74 -2.22 -2.3 - -1.56
- - - - -0.51 2.9 - - - 2.33 -0.77 -0.63 - 1.04 - 1.9 -0.6 - 2.44 -0.57 - - 1.42 - - - -0.67 -0.44 - - -
- - - - - - 3.68 - - - - - - - - 4.18 - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
Bra038634 (CBP60G)
 -0.13 -0.01 1.23 0.31 0.96 1.89 -0.41 -1.98 0.32 0.79 -0.12 0.28 -0.29 -2.15 0.89 -1.23 0.06 -0.1 1.22 0.28 0.17 0.26 -3.11 -1.3 -2.11 -1.17 -0.74 -2.22 -2.3 - -1.56
- - - - - - - - 2.92 2.74 - - - - - 4.07 - - - - - - - - - - - - - - -
Bra039517 (MAP18)
 -0.63 0.22 0.5 -0.32 1.25 0.99 -0.97 -0.46 -0.43 1.04 -1.21 1.2 -0.56 1.2 -0.22 - 1.63 -0.82 - 0.59 -0.51 0.55 -2.99 -3.21 -2.09 - 0.95 -1.26 -0.33 -1.37 -0.57
Bra039890 (VDAC2)
 - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - -
- - - - - - 0.41 - - 1.67 2.37 - - 2.19 - 0.91 - 0.87 1.73 - - - 2.61 - - - - - - 1.86 -
- - - - - - - - 2.7 - - - - - - 4.62 - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.