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Heatmap: Cluster_106 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000572 (CYP81D7)
 1.7 1.65 - 2.44 -0.21 - 0.12 -1.53 0.51 0.84 -3.6 1.6 -0.3 - - - -1.37 - -3.72 -3.45 -2.44 -1.91 0.45 -3.48 -3.52 0.33 -1.86 -0.36 -2.29 2.18 -2.34
- - - - 1.53 0.42 1.15 0.27 - 2.76 - 0.43 - - - - 2.58 - - - - - - - - 1.78 1.57 - - 1.53 -
- - - - - - - - - - - - - 3.03 - - 3.83 - 0.88 - - 0.96 - - - - - - - 1.22 1.33
- - - - - - - - - - - - - - - - 4.15 - - - - - - - 3.73 - - - - - -
Bra002364 (PDP3)
 - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - -
Bra002378 (BUD2)
 - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - -
Bra002644 (LSH5)
 0.81 1.98 2.01 -1.19 -0.42 -1.52 - -1.3 - 0.09 -1.73 - 0.67 0.17 -0.27 - 2.24 -1.59 - - -0.6 -0.07 - -0.02 -1.48 0.42 1.22 0.32 -0.33 -0.47 -
-2.0 -1.67 -1.17 -1.35 -0.19 0.74 0.28 -1.3 -2.35 -2.57 -1.94 -0.37 0.26 1.31 0.99 1.87 2.03 0.47 0.57 0.88 1.13 1.24 -0.51 -3.06 -2.62 -4.74 -4.7 -5.12 -4.02 -4.65 -2.56
- - - - - 1.12 - - 1.22 - - - - - 2.42 1.36 2.32 - - - - - 2.69 - 1.1 - 1.28 - - - 1.37
Bra004693 (ASL18)
 - - - - - - - - - - - - - - - - 4.09 - - - - - - 3.81 - - - - - - -
0.03 0.62 1.1 0.56 - 1.42 -0.3 - -0.27 1.17 1.22 1.5 -0.78 0.12 - - 1.84 - -0.97 -1.04 -0.12 0.78 -0.03 - -0.82 - 0.45 -1.11 - -0.24 -
Bra005557 (SUM5)
 -0.74 -1.55 -1.88 -1.52 0.59 1.21 0.08 0.57 -1.4 0.25 -2.8 0.62 1.47 1.29 0.85 1.16 0.82 0.26 0.64 -1.55 1.17 -0.45 0.16 -1.0 -2.46 -3.11 -1.34 -2.68 -3.16 -3.97 -3.22
- - - - - - - - - - - - - - - - - 2.23 - - - - 3.96 - - - - - 3.43 - -
Bra006285 (HB-3)
 - - - - - -0.08 -1.72 -1.05 1.19 -0.17 -2.34 -0.86 0.35 -0.86 -0.26 -0.24 0.72 -0.06 0.72 0.23 -0.16 0.14 1.95 0.56 0.2 -0.5 -1.01 1.4 -0.0 1.17 -0.23
Bra006302 (MAZ1)
 - - - - - - - - - - - - - - - - 4.02 - - - - - 3.89 - - - - - - - -
- - - - - - - - - - - - - - - - - 3.27 - - - - 3.41 - - - - - - 3.42 -
- - - - - - - - - - - - - - - - - - - - - - 4.38 - - - - - - 3.35 -
- - 1.15 -1.43 0.61 0.3 - - -0.04 -2.95 -3.05 -0.61 -1.5 - -2.61 -1.62 1.59 - - 0.84 - 0.62 1.65 0.26 0.28 1.71 -0.48 1.22 0.31 1.69 -1.84
Bra008621 (MBS2)
 -0.99 -0.96 -0.72 -0.81 -0.9 0.18 -0.61 -0.49 -0.16 0.49 0.1 -1.65 -0.94 -0.55 0.57 0.04 0.0 -1.11 -0.19 0.23 -0.08 0.05 1.32 0.43 0.45 0.31 0.32 0.25 0.6 0.34 0.26
Bra008787 (KNU)
 - - - - - - - - - 3.22 - - - - - - 3.41 3.46 - - - - - - - - - - - - -
Bra009407 (NAS1)
 - - - - - 2.69 1.64 - - 1.74 - - 2.9 - - - 2.84 - - - - - - - - - - - - 1.78 -
Bra009433 (ACR12)
 0.04 0.14 0.4 0.07 0.81 0.34 -0.23 -0.66 -0.14 0.25 -0.02 -0.35 0.39 -0.14 0.31 0.2 -0.22 0.33 0.15 0.04 -0.1 0.22 -0.32 -0.27 -0.19 -0.46 -0.33 -0.44 -0.57 -0.27 -0.14
- - - - - 1.29 - - - -0.27 - - - - 1.03 0.92 1.83 2.23 -0.12 - - - 2.8 - - - - - - 2.53 0.93
Bra010284 (UMAMIT34)
 - - - - - -0.32 - -0.65 1.11 2.02 0.57 1.76 -0.82 -1.3 -0.78 -0.37 2.42 -1.11 -0.22 -0.99 0.87 -0.09 1.33 -0.75 -1.59 - -2.46 -0.05 -1.43 0.08 -2.49
- - - - - - 1.03 1.13 - - - - - - - - 3.36 - - - 3.25 - - - - - 1.19 - - 2.22 -
Bra010817 (RKFL1)
 0.55 0.32 0.56 -1.09 1.01 0.87 -0.96 -0.51 0.28 0.2 0.52 0.42 -1.01 0.37 0.67 0.24 0.11 -1.03 0.01 -0.45 0.03 0.09 -0.09 -0.7 -0.96 -1.46 -0.97 -0.58 -0.06 0.25 -1.23
Bra011847 (PPR5)
 -0.1 -0.19 -0.02 -0.31 0.49 0.08 0.22 0.51 -0.76 0.13 -0.22 -0.13 0.74 0.28 0.01 0.87 0.48 0.39 -0.08 -0.36 0.13 0.07 0.16 -0.47 -0.34 -0.93 -0.46 -0.24 -0.88 -1.04 -0.23
- - - - - - - - - - - - - - - - - - - - - - 3.36 0.38 0.16 -0.17 -0.17 0.1 2.52 2.14 2.41
Bra012497 (CML25)
 - - - - - - 3.2 2.52 - - - - - - - - 2.49 - - - - - 3.38 - - - - - - - -
Bra012587 (DSEL)
 - - - - 2.2 - - - - 2.17 - - - - - - 4.03 - - - - - - - - - - - 2.49 - -
- - - - - - - - - - - - - - - - 3.78 - - - - - 3.07 - - - - - - 2.09 2.2
Bra013512 (GA2OX8)
 - - 1.08 - - 1.57 0.43 - - - - - - - - - - - - - 0.49 - 2.22 0.55 -1.12 -0.41 1.47 -1.09 -1.31 2.13 2.97
Bra014185 (emb1129)
 0.84 - - 2.43 1.76 2.65 - - - - - 0.66 - 2.06 - - 1.86 2.25 - - - - - - - - - - - - -
0.53 - -1.03 - - - -1.06 - - 0.7 0.01 - -0.5 - - 1.01 - -0.55 - - - - 2.86 1.22 1.24 -0.78 -0.8 - 0.39 1.54 2.39
Bra014452 (GolS3)
 - - - - - 0.27 - - - - - - - 0.54 - - 2.94 1.68 - - - 1.94 2.47 - 2.47 - - 0.29 0.4 - -
-2.13 -0.12 - -0.61 - -2.32 -0.54 -0.15 -2.22 0.98 -0.04 -0.71 -0.17 - - -1.52 2.68 1.46 -1.33 -3.22 -3.25 -0.58 2.39 -1.73 -0.41 0.56 -3.16 -3.27 -3.2 1.38 0.35
Bra016467 (TIM17-1)
 - - -0.01 1.09 2.31 -0.26 - - 1.41 - -0.37 - 1.91 - - - 2.93 - - - - -0.34 - - 0.04 - - 1.0 - 1.8 -
Bra016654 (CYCA2;3)
 -1.25 -0.96 -3.24 -0.34 0.86 0.15 0.19 0.92 0.08 0.05 0.04 -3.22 0.97 1.53 -0.03 0.96 1.96 -0.05 -4.54 0.53 0.2 0.7 -3.12 -1.56 -1.9 -1.7 -0.62 -2.06 -1.16 -2.56 -0.87
0.12 -0.17 -0.19 -0.33 0.45 0.53 -0.43 -0.43 -0.37 -0.61 -0.38 -0.37 -0.43 0.51 0.6 -0.02 0.83 0.27 0.9 -0.19 -0.33 -0.36 0.26 -0.31 -0.32 -0.68 -0.31 -0.22 -0.01 -0.12 0.15
Bra017636 (MBD8)
 - 0.47 - - - - 1.58 - - - - 1.47 - 2.07 1.31 - 2.88 - - - 0.14 - - - - 0.46 1.84 - 1.31 0.35 -
Bra017785 (LSU)
 -0.01 -1.05 -0.0 -1.4 1.73 0.39 -1.37 - -1.26 2.02 -1.37 - 1.47 - 0.9 0.65 0.62 2.4 0.9 - -1.01 -0.95 0.04 - - - - -0.19 - - -1.05
Bra017832 (SAP7)
 - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - -
Bra018154 (HB-3)
 - - - - -9.48 0.41 -0.7 -0.31 1.74 0.64 -8.67 0.37 -0.29 0.01 0.23 -0.06 0.7 - 0.87 -0.01 0.6 -0.21 0.01 0.72 -0.32 -0.51 -0.39 1.36 0.36 0.71 -0.18
Bra018156 (PWD)
 - - - - - 0.58 -0.58 -0.24 1.84 0.74 - 0.24 -0.21 -0.0 0.51 0.14 0.43 - 0.71 0.03 0.49 0.11 -0.13 0.37 -0.39 -0.56 -0.66 1.58 0.18 0.74 -0.71
Bra018384 (HSP17.6B)
 -3.36 0.93 -4.46 -3.77 -0.7 -0.18 -1.41 0.35 1.07 0.83 1.78 1.48 -0.36 0.94 0.02 -0.88 1.08 -0.02 -0.4 -0.64 -0.96 -0.54 0.13 -1.06 -0.66 -1.93 -0.9 -2.31 -0.1 -0.81 -0.07
Bra018916 (AtDOB4)
 - - - - 1.1 1.16 - - - 0.19 - - - - - - - - - - - 1.75 3.91 - - 1.18 - - - 1.82 0.35
Bra018972 (HSP26.5)
 1.88 2.17 1.62 0.01 -0.74 -2.19 -1.37 -0.43 -1.67 -2.69 -1.37 -2.06 -1.6 -0.25 -0.25 -1.13 2.03 1.73 -0.03 -0.54 -1.42 -1.11 -1.56 -4.32 -2.4 - -2.19 -3.89 -1.25 -0.78 0.56
Bra019098 (OPT5)
 -0.69 -0.66 - -0.42 -1.98 0.95 0.11 - -1.95 1.73 -0.51 - 1.31 1.08 -1.61 0.19 2.42 -2.13 - 0.31 -2.16 -2.21 1.31 - 0.76 -1.08 -0.37 - 0.7 -0.34 -1.76
Bra019315 (RKC1)
 0.21 0.4 0.39 -0.08 0.61 0.44 -0.26 -0.1 -0.04 0.13 0.13 -0.03 -0.44 0.03 0.09 0.34 0.09 -0.73 -0.16 0.08 -0.04 0.02 0.13 -0.47 -0.52 -1.07 -0.22 -0.47 -0.14 0.35 0.06
- - - - - - 2.7 - - - - - - - - - 4.05 - 2.99 - - - - - - - - - - - -
- - - - - 0.48 -0.71 -0.67 1.77 0.53 - 0.44 -0.1 0.2 0.04 0.02 0.77 - 0.93 0.3 0.69 -0.02 0.01 0.63 -0.87 -1.03 -0.42 1.21 0.23 0.89 -0.14
- - - 1.06 - 1.75 0.64 1.52 1.86 - - - - 1.11 - -0.63 2.82 - - 1.59 0.7 - -0.75 - - - -0.83 -0.72 - - 0.29
Bra020456 (P3B)
 - - - - - - - - - - - - - - - - 4.05 - - - - - 3.86 - - - - - - - -
Bra020711 (RTNLB8)
 - - - - - - - - - - - - 3.07 1.37 2.78 - 3.72 - - - - - - - - - - - - - -
Bra020726 (ERF1-1)
 - - - - - - - - - - - - 3.63 - - 2.63 3.64 - - - - - - - - - - - - - -
- 0.14 0.63 - - 0.75 0.59 - - - - 0.62 -0.06 - - 0.97 1.53 2.31 - - - - 1.81 - - - - 1.0 - 2.44 0.93
Bra021303 (ATG8C)
 - - - - 2.07 - - - - - - - - - - - 3.76 - - - - - - - - - 3.15 - 2.12 - -
Bra021449 (AGP26)
 - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - -
Bra022056 (VPS60.1)
 - - - - - - - - - - - - - - - - 3.68 - - - - 2.46 3.66 - - - - - - - -
- - - - - 1.08 - - - - - - - - - - 4.48 - - - - - - - - - 2.7 - - - -
- - - - - - - - - - 3.4 - - - - - 3.78 - - - - - - - - - - - - - 2.75
Bra023214 (AT-IE)
 1.27 - -0.34 - -0.05 1.49 -0.27 - 1.24 1.29 - -1.66 - 0.24 -1.47 0.91 3.59 - -0.63 -0.63 -0.78 - - - - - - - - - -0.42
1.72 1.2 - 0.21 - 1.39 -1.28 0.05 - 0.43 - 1.3 0.61 - - 1.86 1.99 1.33 - -1.13 -1.14 - -1.14 - - - - -0.87 -1.02 0.88 -1.02
-0.79 0.23 -0.59 -2.74 1.11 0.82 0.29 -0.88 0.06 -0.27 -0.4 -0.12 1.2 1.01 0.19 0.2 -0.41 1.18 0.76 -2.77 0.54 -0.21 0.88 -0.89 -1.4 -2.17 -0.41 -1.62 -0.69 -1.01 -2.23
Bra024615 (BCA3)
 - - - - 0.58 2.24 - -0.84 0.6 -0.07 - - -0.91 1.49 - 1.69 2.07 1.71 - -1.0 - 1.15 0.54 - - 0.94 - - 0.1 - -0.82
0.34 0.62 0.51 -0.26 1.37 0.65 -0.82 -1.23 -0.33 0.38 0.17 -0.45 -0.55 -0.22 0.04 0.22 0.21 -1.97 0.17 0.56 0.44 0.54 -1.64 -0.5 -0.22 -1.1 -0.08 -0.85 -0.67 0.02 -0.37
-2.92 -2.83 -2.67 -3.06 -2.44 0.35 -0.85 -0.5 1.69 0.61 -3.29 0.36 -0.38 0.03 0.05 -0.04 0.69 -4.03 0.84 0.04 0.39 -0.2 -0.1 0.43 -0.38 -0.3 -0.34 1.3 0.3 0.87 -0.11
Bra028327 (MSH2)
 1.09 - - - - - - - - - - - - 1.9 - - 2.55 - - - - - 2.35 1.78 1.83 - 0.77 - 1.9 - 0.83
-1.8 -1.26 - -0.02 -1.48 0.37 -1.0 -0.94 0.19 -0.85 0.67 0.02 0.31 -0.67 0.07 -0.62 1.61 0.56 0.44 -1.53 -0.82 0.03 1.55 -1.6 -2.15 -0.29 0.18 -0.58 0.31 1.09 0.56
- - - - - - - - - - - - - - - - - - - - - - 4.02 - - - - - 2.93 2.83 -
Bra029119 (ADF10)
 - - - - - - - - 3.91 - - - - - - - 3.99 - - - - - - - - - - - - - -
- - - - 2.02 - - - - - - - - - - - - - - - - - 3.13 - - - - 2.13 - 3.79 -
Bra029365 (ABS)
 - - - 1.98 - - - - - - 1.5 - - - - - 3.12 2.43 - - - - - - - - - - - 1.65 2.81
- - - - - - - - - - - - - - - - - - - - - - 4.36 - - - - - - 3.38 -
Bra030047 (BGAL15)
 - - - - - - -0.04 -0.53 - - - - -0.63 2.55 1.34 -0.51 2.97 0.15 -0.01 - - - -0.79 0.23 0.94 - 1.15 0.88 -0.53 - 0.35
Bra030161 (RKFL1)
 0.55 -0.4 0.33 -2.21 0.51 0.76 -1.34 -0.02 0.52 0.68 1.34 0.89 -0.15 0.03 0.06 -0.35 0.57 -0.05 0.16 -0.66 0.57 -0.38 0.9 -1.62 -1.07 -1.61 -1.37 -1.23 -1.56 -0.66 -1.28
Bra030162 (RKFL1)
 0.69 -0.95 -0.08 -1.74 -0.22 0.33 -0.82 0.31 0.5 0.72 1.41 0.87 0.18 -0.66 -0.49 0.23 0.52 -0.81 0.47 -0.11 0.87 -0.13 -2.21 -0.83 -0.76 -0.87 -0.57 -1.19 -1.0 -0.44 0.24
Bra030167 (RKFL1)
 1.01 -0.66 0.14 -1.81 0.03 0.52 -1.18 0.42 0.58 0.96 1.57 0.86 -0.01 -1.24 -0.75 -0.27 0.51 -0.91 0.59 -0.59 0.94 -0.54 -0.87 -0.92 -0.96 -1.2 -0.9 -1.32 -1.22 -0.63 -0.16
- - - - - - - - - - - - 2.65 2.57 - - 3.66 - - - - - - - - - - - - - 2.62
Bra031047 (NDF6)
 0.53 - 1.13 - 0.11 - - 0.86 - -0.14 -0.39 -0.19 - - 0.09 1.01 1.97 - 0.16 - 0.13 - 0.09 - - - - 1.78 1.14 1.79 1.35
Bra031725 (HSP17.6B)
 -3.36 0.93 -4.46 -3.77 -0.7 -0.18 -1.41 0.35 1.07 0.83 1.78 1.48 -0.36 0.94 0.02 -0.88 1.08 -0.02 -0.4 -0.64 -0.96 -0.54 0.13 -1.06 -0.66 -1.93 -0.9 -2.31 -0.1 -0.81 -0.07
Bra031780 (OGOX3)
 - -1.59 - -0.05 - - -1.29 -2.09 0.34 - - - - 1.39 -1.89 - - -0.58 - - - - 2.77 2.11 -0.08 1.6 -1.01 -0.14 1.56 1.74 0.49
Bra032311 (YSL8)
 - - - - - - - - - - - - - - - - 4.95 - - - - - - - - - - - - - -
- - - - 2.01 1.86 - - - - - - - - - - 3.05 - - - - - 1.88 1.85 - 1.82 - 2.09 - - -
-0.29 -1.86 0.52 - -0.29 -3.22 -1.03 -2.08 -1.5 0.99 0.21 0.04 1.64 -0.06 -0.27 0.23 -0.02 2.09 -1.13 0.07 0.41 -0.98 0.78 -0.61 -0.23 - -0.55 -1.0 -0.25 -3.07 1.17
- - - - - - - - - - - - - - - - - - - - - - 4.63 - - - - - - 2.64 -
Bra033755 (CYP706A3)
 1.12 - 1.81 - - - - - - - - - - - - - - 2.22 - - - - 3.76 - - - - 0.92 - 2.38 -
Bra033849 (CSLD6)
 1.45 1.17 -1.59 1.86 -0.95 - 1.64 -0.06 - 1.29 -0.22 1.27 -0.1 -0.29 - -2.35 1.38 -0.1 0.21 -0.55 0.24 -2.68 -1.04 - - -2.24 - 0.84 -2.34 -2.5 -2.31
Bra033868 (NIP3;1)
 - - - - -0.81 -0.95 - - - - - 0.09 2.0 - - - 2.62 - - -0.74 0.8 - 2.19 -0.88 1.69 0.69 - - 1.68 0.02 1.16
Bra034492 (TRIPP)
 - - - - - 0.94 - - - - - 1.01 - - - - - 1.23 - - - - 3.84 2.0 - - - - - 2.07 1.13
- - - - - - 1.16 - - - - - 1.67 2.76 - - 2.62 - 2.19 - - 2.35 - - - - 1.58 - - - -
Bra035270 (SWEET7)
 - - - - - - - - - - - - - - - - - - - - - - 3.97 - - - - - - 3.94 -
- - - - - 1.13 - - - 1.65 - - - - - - 2.47 - - - - 1.89 - 2.32 2.92 - 1.29 - 0.52 - -
Bra038417 (ZIP10)
 - - - - 0.64 2.75 - - - - - - 1.4 - - - 3.46 -0.49 - -0.32 1.53 - - - - - 2.22 - - - -
Bra038426 (HESP)
 -0.34 -0.16 -0.05 -0.01 -0.06 0.02 -0.05 0.2 0.05 -0.35 0.04 -0.54 0.43 0.08 0.16 0.56 0.98 -0.34 0.09 0.37 0.48 0.65 -0.41 -0.45 -0.58 -0.32 -0.3 -0.75 -0.57 -0.46 -0.17
Bra038586 (scpl17)
 3.05 - - - - - - - - - - - - 2.14 - - 3.81 - 0.94 - - - - - - - - - - - 1.22
Bra038604 (EMB2759)
 1.25 - 1.57 - - 1.4 0.43 1.55 0.02 1.93 0.02 - 0.81 0.82 - 0.36 1.73 0.52 -0.05 - 1.23 - - - - - - - - - -
Bra040071 (KOC1)
 - - - - - - - - - - - - - - - - - - - - - - 3.21 3.05 - - - - 1.82 2.66 1.85
-0.81 - - - 2.64 1.12 - - -1.6 1.01 - 1.33 - - - - 3.68 - - - - -0.09 - - - - - - -3.27 1.47 -0.94

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.