Heatmap: Cluster_401 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001191 (P4H2)
-4.64 -2.44 -2.35 -2.23 -1.54 -0.38 -2.41 -1.15 -0.23 -0.62 -1.5 -0.67 -1.99 1.25 -0.44 0.38 -0.07 0.08 0.72 -1.84 -3.87 -3.2 1.1 1.18 1.52 0.61 0.9 0.39 1.24 0.57 0.6
- - - - -0.89 - -4.2 -2.6 -0.04 -0.31 0.03 -1.36 -1.32 1.75 0.33 - 0.25 - - - 0.95 -1.03 -0.72 1.7 1.38 0.95 1.05 1.41 1.51 -0.13 0.65
-1.0 -0.67 -0.54 -0.47 -0.43 -0.19 -1.13 -0.46 -0.22 -0.2 -0.14 -0.31 0.16 0.63 0.21 -0.3 -0.37 0.66 0.05 -0.3 -0.47 -0.14 1.27 0.18 0.19 0.66 0.24 0.13 0.18 0.21 -0.12
Bra003388 (SAC9)
-0.08 -1.13 -0.09 -0.66 0.21 0.27 -0.64 -0.72 -0.02 -0.84 -0.01 -0.43 -0.53 0.81 0.44 -0.22 -0.71 0.02 0.09 -0.44 -0.42 0.13 0.39 0.1 0.07 0.08 0.16 0.2 0.39 0.5 0.78
Bra003401 (BGLU16)
-4.92 -5.6 -2.6 -4.55 -4.61 -3.7 -4.87 -0.15 -0.57 -0.51 0.64 -0.09 -0.49 1.79 0.36 -0.26 -7.52 -6.55 -1.06 -4.77 0.02 -0.01 0.99 0.59 0.67 0.54 0.73 0.67 1.19 0.9 1.61
Bra007553 (PDLP8)
-2.82 -2.79 - -2.75 - -1.56 0.16 -1.25 -0.72 -0.14 -0.13 -0.93 0.04 0.43 0.58 -0.31 -0.22 1.71 -0.35 -1.51 -2.1 -1.17 2.4 0.14 -1.13 1.25 0.13 -0.57 0.63 -0.2 0.77
Bra007878 (WRKY9)
- - - - - -0.73 - - - - -0.1 - 0.66 0.21 1.57 - - -1.48 -0.98 -0.04 -1.67 - -1.13 1.71 1.92 0.9 1.56 0.83 0.23 1.81 1.5
-4.52 -3.49 -4.66 -3.94 -3.32 -0.73 -1.22 -5.11 -0.45 -3.4 0.64 -2.6 -0.58 1.13 1.32 -3.76 -4.93 -0.79 0.13 -1.19 -1.02 0.15 0.6 0.5 1.47 0.64 1.39 0.7 0.9 1.45 0.8
-4.28 -2.26 -3.63 -3.73 -1.33 0.2 -1.25 -1.71 -2.59 -0.32 0.71 -0.19 -0.45 1.18 -0.22 -0.82 -0.65 0.24 0.3 -0.53 -2.34 0.04 1.83 0.52 0.56 0.86 0.77 0.26 0.71 0.22 0.51
Bra039897 (HTT2)
- - - - - - - 0.59 - - - -0.76 - 2.07 - - -2.92 -0.46 0.12 - 0.26 - 1.81 0.3 1.25 -0.25 2.11 1.37 1.36 0.82 1.27

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.